Rw0G000070

histone deacetylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00002
OG0000538
Physical Location & Seq
Forward (+)
18581 .. 21030
2450 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G000070.1

Sequence Viewer

Length: 1491 bp
ATGGCGATCAAGCGCCTCCGAACCAAGTGGACTCCGATTCAGCGCGAAACGCTCGAGAAGGCCTATTCAGTGGAGAGGACCCCATCGGAGGCGACGAAGGAGGAGCTATCGAAGCAGTTAGAGCTCGGGTATGAGCAGGTCACGGTTTGGTTCATGAACCGAAGAGCCAAGGATCGCAGGCAGGGGATTGTGGCCAAGAAATCGAGAATGACTCGTCATCAGGTTGCGACTCTCGAGAAGACCTATGCCGCGGAGAAGAATCCGTCGGTGTCGAAGAGGGAGGAGCTTGGGAAGAAGGTGGGGCTAACTGAGATTCAGGTGAGGCTGTGGTACAACAAGAAGAGATTTGAGGATCAGGGGAAGGAGAGGAAGGAGAAGAAGAAGCGGGGTACCGGGGCCAAGAAGCCACCGAAATCGGCACTGGCTTCGTCCTGTGATCACCTGGCTTTCGTGTCGGCTGACCTCACTGGCATTCCCAATCCTGACAGTCCCTGCAAAAGTTATACTAGATGCCAGAATCCCAATGAGAACTGGTGTTGTTTGTGCTGCAAGGATGTGTTCTGTAGTGTTGATTTGATGAACGGGCACTTGTTTCAGCATTTTAAGCAGACAAATCATTGTCTTGCTGTCAGCTGCAGTGATAAATCAATTTGGTGCTACTCCTGCAATTCATTCTTAGATGCTCAGGCAATTCCACAATTGAGTGCTTTTTCATCATCCTCCAATGCTTCCAGGCCATCATCCTCATCCAGGCTAGAGAGCCCTGATGCCTCCAAGGATTCATCCTCCTCATCCAGGCTAGAGAACCTCGATGCTCTGATGGTTGATGTTACCGATCTCATATCCAAGCCATCTCCGTGCCCCAGTTTTCATCCACTGGATGATAACTCATTTAAGGGACTCCAGAAGATCTTTGATTGTGGTTTAGAAGCTTTAGCCGATCCCCATGTACAAGAAGAGTTTCTTTCTTATTCAGCCACAGTTCTATCAGTCGATTCATGCCCATCAGAGTTGAAGACCATTCTTTCGTCTTTCAGAGGCAATCTCTCAGAGGAGACCATTGCTTTCCTCCAAGGTCAACATGAGTTGAAGGTGGCCTCCGACCTAGCAGCCTCGATTACTGAGAGAAGGTTTGTTCTCCGTTATCATCATTCGAAGTATGCTGAGGTGAAGAAACAAATTATTGCCTCAGATGAGAAAGTTGCGAACCTTAAGGCCATGATCAAAAGGTTGGAAGCTTCTTTGGCTGAAGAAAAGAGCAACAGAGAGAAGATTGATCGGGTTTTGGATTCTATCGAGACAGGAGTAATGGATGCTAGAGATGGATTGCTCTCTGATATAGAACAAGTGTCTGCCATGGAGGGAACGACCAAAGCAGCCAACCAGTTAGTAGCTCAACGCCACTCAGCATGGGAGAACCTAAGGAATACTTTTACAGAGGTATATAGTAATCTGCATGCAGGGGAACAACATGCTGAACCCACCAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-UBP

Protein Analysis

496

Amino Acids

55.64

Weight (kDa)

8.38

Isoelectric Point (pI)

42.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 4 - 60 6.2e-17 Homeodomain
Homeodomain PF00046 66 - 115 3.1e-11 Homeodomain
zf-UBP PF02148 169 - 228 1.7e-13 Zn-finger in ubiquitin-hydrolases and other protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000538)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g04050 FvH4_2g04050 FvH4_2g04050 FvH4_2g04050 FvH4_2g04050
rosa_chinensis RchiOBHm_Chr6g0253231 RchiOBHm_Chr6g0253251 RchiOBHm_Chr6g0253261 RchiOBHm_Chr6g0253271 RchiOBHm_Chr6g0253291 RchiOBHm_Chr6g0253321 RchiOBHm_Chr6g0253331 RchiOBHm_Chr6g0253341 RchiOBHm_Chr6g0253371 RchiOBHm_Chr6g0253401
rosa_laevigata RLG00000015022 RLG00000015023 RLG00000015024 RLG00000015027 RLG00000015028 RLG00000015030 RLG00000015031 RLG00000015034 RLG00000015035 RLG00000015038 RLG00000015041
rosa_multiflora Rmu_sc0001257.1_g000004 Rmu_sc0001257.1_g000008 Rmu_sc0001257.1_g000014 Rmu_sc0001257.1_g000016 Rmu_sc0001257.1_g000019 Rmu_sc0001257.1_g000026 Rmu_sc0002560.1_g000013 Rmu_sc0002560.1_g000020 Rmu_sc0002560.1_g000021 Rmu_sc0003855.1_g000005 Rmu_sc0003855.1_g000011 Rmu_sc0003898.1_g000003 Rmu_sc0003898.1_g000005 Rmu_sc0003898.1_g000016 Rmu_sc0003898.1_g000017 Rmu_sc0005439.1_g000007 Rmu_sc0005439.1_g000014 Rmu_sc0005439.1_g000021
rosa_roxburghii Rroxscaffold_7G00211930 Rroxscaffold_7G00211940 Rroxscaffold_7G00211960 Rroxscaffold_7G00211980 Rroxscaffold_7G00211990 Rroxscaffold_7G00212000 Rroxscaffold_7G00212050 Rroxscaffold_7G00212060 Rroxscaffold_7G00212070 Rroxscaffold_7G00212080 Rroxscaffold_7G00212160
rosa_rugosa Rorug05G0542900 Rorug05G0542900 Rorug05G0543000 Rorug05G0543100 Rorug05G0543100 Rorug05G0543200 Rorug05G0543300 Rorug05G0543400 Rorug05G0543400 Rorug05G0543500 Rorug05G0543600 Rorug05G0543700
rosa_samantha Rh6CG050000 Rh6DG045200 Rh6DG045500 Rh6DG045600 Rh6DG045700 Rh6DG045800 Rh6DG046200 Rh6DG046300 Rh6DG046400 Rh6DG046500 Rh6DG046700 Rh6DG046800
rosa_wichuraiana Rw0G000070 Rw6G005230 Rw6G005240 Rw6G005280 Rw6G005290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 127
Acc65I GGTACC 1 cut(s) 389
AccB1I GGYRCC 1 cut(s) 389
AccII CGCG 2 cut(s) 45, 251
AciI CCGC 3 cut(s) 249, 251, 385
AclWI GGATC 3 cut(s) 180, 360, 935
AcoI YGGCCR 1 cut(s) 192
AcuI CTGAAG 1 cut(s) 1269
AfaI GTAC 3 cut(s) 332, 391, 951
AfiI CCNNNNNNNGG 3 cut(s) 88, 750, 795
AflII CTTAAG 1 cut(s) 1211
AgsI TTSAA 2 cut(s) 1015, 1090
AjnI CCWGG 4 cut(s) 441, 731, 749, 794
AluBI AGCT 7 cut(s) 106, 124, 286, 633, 932, 1238, 1394
AluI AGCT 7 cut(s) 106, 124, 286, 633, 932, 1238, 1394
Alw21I GWGCWC 1 cut(s) 126
Alw26I GTCTC 2 cut(s) 1049, 1292
AlwI GGATC 3 cut(s) 180, 360, 935
AlwNI CAGNNNCTG 1 cut(s) 492
Ama87I CYCGRG 3 cut(s) 53, 125, 233
AoxI GGCC 6 cut(s) 60, 192, 396, 734, 1095, 1215
ApeKI GCWGC 4 cut(s) 546, 633, 1109, 1376
ArsI GACNNNNNNTTYG 2 cut(s) 1009, 1041
Asp700I GAANNNNTTC 1 cut(s) 960
Asp718I GGTACC 1 cut(s) 389
AspLEI GCGC 2 cut(s) 15, 45
AspS9I GGNCC 2 cut(s) 78, 396
AsuC2I CCSGG 1 cut(s) 394
AsuHPI GGTGA 3 cut(s) 331, 431, 1180
AsuII TTCGAA 1 cut(s) 1154
AvaI CYCGRG 3 cut(s) 53, 125, 233
AvaII GGWCC 1 cut(s) 78
AxyI CCTNAGG 1 cut(s) 1421
BaeGI GKGCMC 2 cut(s) 588, 863
BalI TGGCCA 1 cut(s) 194
BanI GGYRCC 1 cut(s) 389
BanII GRGCYC 2 cut(s) 126, 764
BbsI GAAGAC 2 cut(s) 245, 1022
Bbv12I GWGCWC 1 cut(s) 126
BbvCI CCTCAGC 1 cut(s) 1164
BbvI GCAGC 4 cut(s) 533, 620, 1121, 1388
BccI CCATC 6 cut(s) 91, 745, 814, 859, 1012, 1316
BcgI CGANNNNNNTGC 2 cut(s) 408, 442
BciT130I CCWGG 4 cut(s) 443, 733, 751, 796
BclI TGATCA 2 cut(s) 436, 1221
BcnI CCSGG 1 cut(s) 394
BcoDI GTCTC 2 cut(s) 1049, 1292
BfaI CTAG 5 cut(s) 507, 755, 800, 1106, 1317
BfmI CTRYAG 2 cut(s) 562, 634
BfoI RGCGCY 1 cut(s) 16
BfrI CTTAAG 1 cut(s) 1211
BfuAI ACCTGC 1 cut(s) 127
BglII AGATCT 1 cut(s) 909
BisI GCNGC 5 cut(s) 249, 547, 634, 1110, 1377
BlsI GCNGC 5 cut(s) 250, 548, 635, 1111, 1378
Bme1390I CCNGG 5 cut(s) 394, 443, 733, 751, 796
Bme18I GGWCC 1 cut(s) 78
BmeT110I CYCGRG 3 cut(s) 53, 125, 233
BmgT120I GGNCC 2 cut(s) 78, 396
BmiI GGNNCC 3 cut(s) 80, 391, 397
BmrFI CCNGG 5 cut(s) 394, 443, 733, 751, 796
BmrI ACTGGG 1 cut(s) 858
BmsI GCATC 5 cut(s) 500, 670, 757, 802, 1303
BmuI ACTGGG 1 cut(s) 858
BpiI GAAGAC 2 cut(s) 245, 1022
BplI GAGNNNNNCTC 4 cut(s) 196, 228, 1029, 1061
BpmI CTGGAG 1 cut(s) 887
Bpu10I CCTNAGC 2 cut(s) 684, 1164
Bpu14I TTCGAA 1 cut(s) 1154
BpuMI CCSGG 1 cut(s) 394
BsaI GGTCTC 1 cut(s) 1049
BsaJI CCNNGG 6 cut(s) 168, 249, 393, 774, 1072, 1356
Bsc4I CCNNNNNNNGG 3 cut(s) 88, 750, 795
Bse1I ACTGG 7 cut(s) 426, 472, 536, 864, 882, 1384, 1485
Bse21I CCTNAGG 1 cut(s) 1421
Bse3DI GCAATG 1 cut(s) 1059
BseBI CCWGG 4 cut(s) 443, 733, 751, 796
BseDI CCNNGG 6 cut(s) 168, 249, 393, 774, 1072, 1356
BseGI GGATG 9 cut(s) 559, 716, 740, 746, 782, 791, 871, 886, 1318
BseLI CCNNNNNNNGG 3 cut(s) 88, 750, 795
BseMI GCAATG 1 cut(s) 1059
BseMII CTCAG 7 cut(s) 300, 698, 1062, 1113, 1155, 1203, 1419
BseNI ACTGG 7 cut(s) 426, 472, 536, 864, 882, 1384, 1485
BseRI GAGGAG 4 cut(s) 116, 296, 778, 1067
BseSI GKGCMC 2 cut(s) 588, 863
BseXI GCAGC 4 cut(s) 533, 620, 1121, 1388
Bsh1236I CGCG 2 cut(s) 45, 251
BshFI GGCC 6 cut(s) 62, 194, 398, 736, 1097, 1217
BshNI GGYRCC 1 cut(s) 389
BsiHKAI GWGCWC 1 cut(s) 126
BsiHKCI CYCGRG 3 cut(s) 53, 125, 233
BsiSI CCGG 1 cut(s) 393
BslFI GGGAC 2 cut(s) 474, 912
BslI CCNNNNNNNGG 3 cut(s) 88, 750, 795
BsmAI GTCTC 2 cut(s) 1049, 1292
BsmFI GGGAC 2 cut(s) 474, 912
BsmI GAATGC 1 cut(s) 471
BsnI GGCC 6 cut(s) 62, 194, 398, 736, 1097, 1217
Bso31I GGTCTC 1 cut(s) 1049
BsoBI CYCGRG 3 cut(s) 53, 125, 233
Bsp119I TTCGAA 1 cut(s) 1154
Bsp1286I GDGCHC 4 cut(s) 126, 588, 764, 863
Bsp1407I TGTACA 1 cut(s) 949
Bsp143I GATC 9 cut(s) 6, 172, 352, 436, 835, 909, 940, 1221, 1276
Bsp19I CCATGG 1 cut(s) 1356
BspACI CCGC 3 cut(s) 249, 251, 385
BspANI GGCC 6 cut(s) 62, 194, 398, 736, 1097, 1217
BspCNI CTCAG 7 cut(s) 301, 697, 1061, 1114, 1156, 1202, 1418
BspFNI CGCG 2 cut(s) 45, 251
BspHI TCATGA 1 cut(s) 153
BspLI GGNNCC 3 cut(s) 80, 391, 397
BspMAI CTGCAG 1 cut(s) 638
BspMI ACCTGC 1 cut(s) 127
BspPI GGATC 3 cut(s) 180, 360, 935
BspQI GCTCTTC 1 cut(s) 157
BspT104I TTCGAA 1 cut(s) 1154
BspT107I GGYRCC 1 cut(s) 389
BspTI CTTAAG 1 cut(s) 1211
BspTNI GGTCTC 1 cut(s) 1049
BsrDI GCAATG 1 cut(s) 1059
BsrGI TGTACA 1 cut(s) 949
BsrI ACTGG 7 cut(s) 426, 472, 536, 864, 882, 1384, 1485
BssECI CCNNGG 6 cut(s) 168, 249, 393, 774, 1072, 1356
BssMI GATC 9 cut(s) 6, 172, 352, 436, 835, 909, 940, 1221, 1276
BssT1I CCWWGG 4 cut(s) 168, 774, 1072, 1356
Bst2UI CCWGG 4 cut(s) 443, 733, 751, 796
Bst4CI ACNGT 3 cut(s) 145, 488, 982
Bst6I CTCTTC 4 cut(s) 157, 269, 335, 951
BstAFI CTTAAG 1 cut(s) 1211
BstAUI TGTACA 1 cut(s) 949
BstBI TTCGAA 1 cut(s) 1154
BstC8I GCNNGC 2 cut(s) 179, 1458
BstDEI CTNAG 9 cut(s) 309, 676, 684, 1048, 1122, 1164, 1189, 1405, 1421
BstDSI CCRYGG 2 cut(s) 249, 1356
BstENI CCTNNNNNAGG 2 cut(s) 748, 793
BstF5I GGATG 9 cut(s) 559, 716, 740, 746, 782, 791, 871, 886, 1318
BstFNI CGCG 2 cut(s) 45, 251
BstH2I RGCGCY 1 cut(s) 16
BstHHI GCGC 2 cut(s) 15, 45
BstKTI GATC 9 cut(s) 9, 175, 355, 439, 838, 912, 943, 1224, 1279
BstMAI GTCTC 2 cut(s) 1049, 1292
BstMBI GATC 9 cut(s) 6, 172, 352, 436, 835, 909, 940, 1221, 1276
BstMWI GCNNNNNNNGC 6 cut(s) 49, 112, 121, 604, 663, 1244
BstNI CCWGG 4 cut(s) 443, 733, 751, 796
BstNSI RCATGY 2 cut(s) 1460, 1475
BstSCI CCNGG 5 cut(s) 392, 441, 731, 749, 794
BstSFI CTRYAG 2 cut(s) 562, 634
BstSLI GKGCMC 2 cut(s) 588, 863
BstUI CGCG 2 cut(s) 45, 251
BstV1I GCAGC 4 cut(s) 533, 620, 1121, 1388
BstV2I GAAGAC 2 cut(s) 245, 1022
BstX2I RGATCY 1 cut(s) 909
BstYI RGATCY 1 cut(s) 909
Bsu36I CCTNAGG 1 cut(s) 1421
BsuRI GGCC 6 cut(s) 62, 194, 398, 736, 1097, 1217
BtgI CCRYGG 2 cut(s) 249, 1356
BtsCI GGATG 9 cut(s) 559, 716, 740, 746, 782, 791, 871, 886, 1318
BtsI GCAGTG 1 cut(s) 643
BtsIMutI CAGTG 5 cut(s) 75, 419, 465, 643, 875
BveI ACCTGC 1 cut(s) 127
Cac8I GCNNGC 2 cut(s) 179, 1458
CaiI CAGNNNCTG 1 cut(s) 492
CciI TCATGA 1 cut(s) 153
CfoI GCGC 2 cut(s) 15, 45
Cfr13I GGNCC 2 cut(s) 78, 396
Cfr42I CCGCGG 1 cut(s) 252
Csp6I GTAC 3 cut(s) 331, 390, 950
CviAII CATG 9 cut(s) 154, 947, 999, 1082, 1219, 1357, 1410, 1457, 1472
CviQI GTAC 3 cut(s) 331, 390, 950
DdeI CTNAG 9 cut(s) 309, 676, 684, 1048, 1122, 1164, 1189, 1405, 1421
DpnI GATC 9 cut(s) 8, 174, 354, 438, 837, 911, 942, 1223, 1278
DpnII GATC 9 cut(s) 6, 172, 352, 436, 835, 909, 940, 1221, 1276
EaeI YGGCCR 1 cut(s) 192
Eam1104I CTCTTC 4 cut(s) 157, 269, 335, 951
EarI CTCTTC 4 cut(s) 157, 269, 335, 951
Ecl136II GAGCTC 1 cut(s) 124
Eco130I CCWWGG 4 cut(s) 168, 774, 1072, 1356
Eco147I AGGCCT 1 cut(s) 62
Eco24I GRGCYC 2 cut(s) 126, 764
Eco31I GGTCTC 1 cut(s) 1049
Eco47I GGWCC 1 cut(s) 78
Eco53kI GAGCTC 1 cut(s) 124
Eco57I CTGAAG 1 cut(s) 1269
Eco81I CCTNAGG 1 cut(s) 1421
Eco88I CYCGRG 3 cut(s) 53, 125, 233
EcoICRI GAGCTC 1 cut(s) 124
EcoNI CCTNNNNNAGG 2 cut(s) 748, 793
EcoO109I RGGNCCY 1 cut(s) 78
EcoRII CCWGG 4 cut(s) 441, 731, 749, 794
EcoT14I CCWWGG 4 cut(s) 168, 774, 1072, 1356
EcoT38I GRGCYC 2 cut(s) 126, 764
ErhI CCWWGG 4 cut(s) 168, 774, 1072, 1356
FaeI CATG 9 cut(s) 157, 950, 1002, 1085, 1222, 1360, 1413, 1460, 1475
FalI AAGNNNNNCTT 4 cut(s) 948, 980, 1414, 1446
FaqI GGGAC 2 cut(s) 474, 912
FatI CATG 9 cut(s) 153, 946, 998, 1081, 1218, 1356, 1409, 1456, 1471
FauI CCCGC 1 cut(s) 378
FbaI TGATCA 2 cut(s) 436, 1221
Fnu4HI GCNGC 5 cut(s) 249, 547, 634, 1110, 1377
FokI GGATG 9 cut(s) 566, 703, 727, 733, 769, 778, 858, 893, 1325
FriOI GRGCYC 2 cut(s) 126, 764
Fsp4HI GCNGC 5 cut(s) 249, 547, 634, 1110, 1377
FspBI CTAG 5 cut(s) 507, 755, 800, 1106, 1317
GlaI GCGC 2 cut(s) 14, 44
GluI GCNGC 5 cut(s) 249, 547, 634, 1110, 1377
GsuI CTGGAG 1 cut(s) 887
HaeII RGCGCY 1 cut(s) 16
HaeIII GGCC 6 cut(s) 62, 194, 398, 736, 1097, 1217
HapII CCGG 1 cut(s) 393
HhaI GCGC 2 cut(s) 15, 45
Hin1II CATG 9 cut(s) 157, 950, 1002, 1085, 1222, 1360, 1413, 1460, 1475
Hin6I GCGC 2 cut(s) 13, 43
HinP1I GCGC 2 cut(s) 13, 43
HincII GTYRAC 1 cut(s) 1079
HindII GTYRAC 1 cut(s) 1079
HindIII AAGCTT 2 cut(s) 930, 1236
HpaII CCGG 1 cut(s) 393
HphI GGTGA 3 cut(s) 331, 431, 1180
Hpy166II GTNNAC 2 cut(s) 30, 1079
Hpy188III TCNNGA 8 cut(s) 55, 154, 204, 233, 235, 482, 904, 1297
Hpy8I GTNNAC 2 cut(s) 30, 1079
Hpy99I CGWCG 2 cut(s) 97, 268
HpyAV CCTTC 7 cut(s) 52, 91, 289, 355, 364, 1084, 1122
HpyCH4III ACNGT 3 cut(s) 145, 488, 982
HpyCH4V TGCA 6 cut(s) 495, 549, 636, 666, 1456, 1460
HpyF10VI GCNNNNNNNGC 6 cut(s) 49, 112, 121, 604, 663, 1244
HpyF3I CTNAG 9 cut(s) 309, 676, 684, 1048, 1122, 1164, 1189, 1405, 1421
Hsp92II CATG 9 cut(s) 157, 950, 1002, 1085, 1222, 1360, 1413, 1460, 1475
HspAI GCGC 2 cut(s) 13, 43
KpnI GGTACC 1 cut(s) 393
Ksp22I TGATCA 2 cut(s) 436, 1221
KspI CCGCGG 1 cut(s) 252
Kzo9I GATC 9 cut(s) 6, 172, 352, 436, 835, 909, 940, 1221, 1276
LguI GCTCTTC 1 cut(s) 157
LmnI GCTCC 2 cut(s) 103, 283
Lsp1109I GCAGC 4 cut(s) 533, 620, 1121, 1388
LweI GCATC 5 cut(s) 500, 670, 757, 802, 1303
MaeI CTAG 5 cut(s) 507, 755, 800, 1106, 1317
MaeIII GTNAC 2 cut(s) 139, 829
MalI GATC 9 cut(s) 8, 174, 354, 438, 837, 911, 942, 1223, 1278
MboI GATC 9 cut(s) 6, 172, 352, 436, 835, 909, 940, 1221, 1276
MfeI CAATTG 1 cut(s) 698
MflI RGATCY 1 cut(s) 909
MhlI GDGCHC 4 cut(s) 126, 588, 764, 863
MlsI TGGCCA 1 cut(s) 194
MluCI AATT 5 cut(s) 648, 667, 690, 698, 1179
MluNI TGGCCA 1 cut(s) 194
MlyI GAGTC 4 cut(s) 25, 205, 223, 894
MmeI TCCRAC 2 cut(s) 1125, 1212
Mox20I TGGCCA 1 cut(s) 194
MroXI GAANNNNTTC 1 cut(s) 960
MscI TGGCCA 1 cut(s) 194
MseI TTAA 4 cut(s) 603, 894, 1212, 1489
MslI CAYNNNNRTG 1 cut(s) 856
Msp20I TGGCCA 1 cut(s) 194
MspA1I CMGCKG 2 cut(s) 251, 633
MspCI CTTAAG 1 cut(s) 1211
MspI CCGG 1 cut(s) 393
MspR9I CCNGG 5 cut(s) 394, 443, 733, 751, 796
MunI CAATTG 1 cut(s) 698
Mva1269I GAATGC 1 cut(s) 471
MvaI CCWGG 4 cut(s) 443, 733, 751, 796
MvnI CGCG 2 cut(s) 45, 251
MwoI GCNNNNNNNGC 6 cut(s) 49, 112, 121, 604, 663, 1244
NciI CCSGG 1 cut(s) 394
NcoI CCATGG 1 cut(s) 1356
NdeII GATC 9 cut(s) 6, 172, 352, 436, 835, 909, 940, 1221, 1276
NlaIII CATG 9 cut(s) 157, 950, 1002, 1085, 1222, 1360, 1413, 1460, 1475
NlaIV GGNNCC 3 cut(s) 80, 391, 397
NmuCI GTSAC 1 cut(s) 139
NspI RCATGY 2 cut(s) 1460, 1475
NspV TTCGAA 1 cut(s) 1154
PaeI GCATGC 1 cut(s) 1460
PaeR7I CTCGAG 2 cut(s) 53, 233
PagI TCATGA 1 cut(s) 153
PceI AGGCCT 1 cut(s) 62
PciSI GCTCTTC 1 cut(s) 157
PcsI WCGNNNNNNNCGW 1 cut(s) 92
PctI GAATGC 1 cut(s) 471
PdmI GAANNNNTTC 1 cut(s) 960
PfeI GAWTC 7 cut(s) 37, 259, 313, 517, 779, 995, 1289
PkrI GCNGC 5 cut(s) 250, 548, 635, 1111, 1378
PleI GAGTC 4 cut(s) 25, 205, 223, 894
PpsI GAGTC 4 cut(s) 25, 205, 223, 894
PpuMI RGGWCCY 1 cut(s) 78
Psp124BI GAGCTC 1 cut(s) 126
Psp5II RGGWCCY 1 cut(s) 78
Psp6I CCWGG 4 cut(s) 441, 731, 749, 794
PspGI CCWGG 4 cut(s) 441, 731, 749, 794
PspN4I GGNNCC 3 cut(s) 80, 391, 397
PspPI GGNCC 2 cut(s) 78, 396
PspPPI RGGWCCY 1 cut(s) 78
PstI CTGCAG 1 cut(s) 638
PstNI CAGNNNCTG 1 cut(s) 492
PsuI RGATCY 1 cut(s) 909
PvuII CAGCTG 1 cut(s) 633
RsaI GTAC 3 cut(s) 332, 391, 951
RsaNI GTAC 3 cut(s) 331, 390, 950
RseI CAYNNNNRTG 1 cut(s) 856
SacI GAGCTC 1 cut(s) 126
SacII CCGCGG 1 cut(s) 252
SapI GCTCTTC 1 cut(s) 157
SaqAI TTAA 4 cut(s) 603, 894, 1212, 1489
SatI GCNGC 5 cut(s) 249, 547, 634, 1110, 1377
Sau3AI GATC 9 cut(s) 6, 172, 352, 436, 835, 909, 940, 1221, 1276
Sau96I GGNCC 2 cut(s) 78, 396
SchI GAGTC 4 cut(s) 25, 205, 223, 894
ScrFI CCNGG 5 cut(s) 394, 443, 733, 751, 796
SduI GDGCHC 4 cut(s) 126, 588, 764, 863
SfaNI GCATC 5 cut(s) 500, 670, 757, 802, 1303
SfcI CTRYAG 2 cut(s) 562, 634
Sfr274I CTCGAG 2 cut(s) 53, 233
Sfr303I CCGCGG 1 cut(s) 252
SfuI TTCGAA 1 cut(s) 1154
SgrBI CCGCGG 1 cut(s) 252
SinI GGWCC 1 cut(s) 78
SlaI CTCGAG 2 cut(s) 53, 233
SmiMI CAYNNNNRTG 1 cut(s) 856
SmlI CTYRAG 3 cut(s) 53, 233, 1211
SmoI CTYRAG 3 cut(s) 53, 233, 1211
SphI GCATGC 1 cut(s) 1460
Sse9I AATT 5 cut(s) 648, 667, 690, 698, 1179
SseBI AGGCCT 1 cut(s) 62
SsiI CCGC 3 cut(s) 249, 251, 385
SspMI CTAG 5 cut(s) 507, 755, 800, 1106, 1317
SstI GAGCTC 1 cut(s) 126
StuI AGGCCT 1 cut(s) 62
StyD4I CCNGG 5 cut(s) 392, 441, 731, 749, 794
StyI CCWWGG 4 cut(s) 168, 774, 1072, 1356
TaaI ACNGT 3 cut(s) 145, 488, 982
TasI AATT 5 cut(s) 648, 667, 690, 698, 1179
TatI WGTACW 1 cut(s) 949
TauI GCSGC 1 cut(s) 251
TfiI GAWTC 7 cut(s) 37, 259, 313, 517, 779, 995, 1289
Tru1I TTAA 4 cut(s) 603, 894, 1212, 1489
Tru9I TTAA 4 cut(s) 603, 894, 1212, 1489
TscAI CASTG 5 cut(s) 75, 426, 472, 643, 882
TseFI GTSAC 1 cut(s) 139
TseI GCWGC 4 cut(s) 546, 633, 1109, 1376
Tsp45I GTSAC 1 cut(s) 139
TspDTI ATGAA 8 cut(s) 142, 170, 593, 660, 702, 771, 860, 987
TspGWI ACGGA 3 cut(s) 252, 846, 1130
TspRI CASTG 5 cut(s) 75, 426, 472, 643, 882
Vha464I CTTAAG 1 cut(s) 1211
VpaK11BI GGWCC 1 cut(s) 78
XagI CCTNNNNNAGG 2 cut(s) 748, 793
XceI RCATGY 2 cut(s) 1460, 1475
XhoI CTCGAG 2 cut(s) 53, 233
XmnI GAANNNNTTC 1 cut(s) 960
XspI CTAG 5 cut(s) 507, 755, 800, 1106, 1317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.