Rh6DG046800

histone deacetylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000538
Physical Location & Seq
Reverse (-)
4977740 .. 4980188
2449 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG046800.1

Sequence Viewer

Length: 1524 bp
ATGGCGATCAAGCGCCTCCGAACCAAGTGGACTCCGATTCAGCGCGAAACGCTCGAGAAGGCCTATTCAGTGGAGAGGACCCCATCGGAGGCCACGAAGGAGGAGCTATCGAAGCAGTTAGAGCTTGGGTATGAGCAGGTCACGGTTTGGTTCATGAACCGAAGAGCCAAGGATCGCAGGCAGGGGATTGTCGCCAAGAAATCAAGAATGACTCGTCATCAGGTCGCGACTCTCGAGAAGACCTATGCCGCGGAGAAGAATCCGTCGGTGTCGAAAAGGGAGGAGCTTGGGAAGAAGGTGGGGCTTAGTGAGATTCAGGTGAGGCTGTGGTACAACAAGAAGAGATTTGAGGATCAGGGGAAGGAGAGGAAGGAGAAGAAGAAGCGGGGTACCGGGGCCAAGAAGCCACCGAAATCGGCACTGGCTTCGTCCTGTGATCACCTGGCTTTCGTGTCGGCTGACCTCACTGGCATTCCCAATCCTGACACTCCCTGCAAAAGTTATACTAGATGCCAGAATCCCAATGAGAACTGGTGTTGTTTGTGCTGCAAGGACGTGTTCTGTAGTGTTGATTTGATGAACGGGCACTTGTTTCAGCATTTTAAGCAGACAAATCATTGTCTTGCTGTCAGCTGCAGTGATAAATCAATTTGGTGCTACTCCTGCAATTCATTCTTAGATGCTCAGGCAATTCCACAATTGAGTGCTTTTTCATCATCCTCCAATGCTTCCGGGGAGCCATCATCCTCATCCAGGCTAGAGAGCCCTGATGCCTCCAAGGATTCATCCTCCTCATCCAGGCTAGAGAACCTCGATGCTCTGATGGTTGATGTTACCGATCTCATATCCAAGCCATCTCCATGCCCCAGTTTTCATCCACTGGATGATAACTCATTTGTCGACCAGGATAAGCTTGCATTAGCCAAGAAGGGACTCCAGAAGATCTTTGATTGTGGTTTAGAAGCTTTAGCCGATCCCCACGTACAAGAAGAGTTTCTTTCTTATTCAGCCACGGTTCTATCAGTCGATTCATGCCCATCAGAGTTGAAGACCATTCTTTCGTCTTTCAGAGGCAATCTCTCAGAGGAGACCTGTGCTTTCCTCCAAGCTCAACATGAGTTGAAGGTGGCCTCCGACCTAGCAGCCTCGATTACTGAGAGAAGGTTTGTTCTCCGTTATCATCATTCGAAGTATGCTGAGGTGAAGAAACAAATTATTGCCTCAGATGAGAAAGTTGCGAACCTTAAGGCCATGATCAAAAGGTTGGAAGCTTCTTTGGCTGAAGAAAAGAGCAACAGAGAGAAGATTGATCGGCTTTTGGATTCTATCGAGACAGGAGTAATGGATGCTAGAGATGGATTGCTCTCAGATATAGAACAAGTGTCTGCCATGGAGGGAACGACCAAAGCAGCCAACCAGTTAGTAGCTCAACGCCACTCAGCGTGGGAGAACCTAAGGAATACTTTTACAGAGGTATATAGTAATCTGCATGCAGGGGAACAACATGCTGAACCCACCAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-UBP

Protein Analysis

507

Amino Acids

56.77

Weight (kDa)

8.05

Isoelectric Point (pI)

39.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 4 - 60 6.3e-17 Homeodomain
Homeodomain PF00046 66 - 115 3.5e-11 Homeodomain
zf-UBP PF02148 169 - 228 1.7e-13 Zn-finger in ubiquitin-hydrolases and other protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000538)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g04050 FvH4_2g04050 FvH4_2g04050 FvH4_2g04050 FvH4_2g04050
rosa_chinensis RchiOBHm_Chr6g0253231 RchiOBHm_Chr6g0253251 RchiOBHm_Chr6g0253261 RchiOBHm_Chr6g0253271 RchiOBHm_Chr6g0253291 RchiOBHm_Chr6g0253321 RchiOBHm_Chr6g0253331 RchiOBHm_Chr6g0253341 RchiOBHm_Chr6g0253371 RchiOBHm_Chr6g0253401
rosa_laevigata RLG00000015022 RLG00000015023 RLG00000015024 RLG00000015027 RLG00000015028 RLG00000015030 RLG00000015031 RLG00000015034 RLG00000015035 RLG00000015038 RLG00000015041
rosa_multiflora Rmu_sc0001257.1_g000004 Rmu_sc0001257.1_g000008 Rmu_sc0001257.1_g000014 Rmu_sc0001257.1_g000016 Rmu_sc0001257.1_g000019 Rmu_sc0001257.1_g000026 Rmu_sc0002560.1_g000013 Rmu_sc0002560.1_g000020 Rmu_sc0002560.1_g000021 Rmu_sc0003855.1_g000005 Rmu_sc0003855.1_g000011 Rmu_sc0003898.1_g000003 Rmu_sc0003898.1_g000005 Rmu_sc0003898.1_g000016 Rmu_sc0003898.1_g000017 Rmu_sc0005439.1_g000007 Rmu_sc0005439.1_g000014 Rmu_sc0005439.1_g000021
rosa_roxburghii Rroxscaffold_7G00211930 Rroxscaffold_7G00211940 Rroxscaffold_7G00211960 Rroxscaffold_7G00211980 Rroxscaffold_7G00211990 Rroxscaffold_7G00212000 Rroxscaffold_7G00212050 Rroxscaffold_7G00212060 Rroxscaffold_7G00212070 Rroxscaffold_7G00212080 Rroxscaffold_7G00212160
rosa_rugosa Rorug05G0542900 Rorug05G0542900 Rorug05G0543000 Rorug05G0543100 Rorug05G0543100 Rorug05G0543200 Rorug05G0543300 Rorug05G0543400 Rorug05G0543400 Rorug05G0543500 Rorug05G0543600 Rorug05G0543700
rosa_samantha Rh6CG050000 Rh6DG045200 Rh6DG045500 Rh6DG045600 Rh6DG045700 Rh6DG045800 Rh6DG046200 Rh6DG046300 Rh6DG046400 Rh6DG046500 Rh6DG046700 Rh6DG046800
rosa_wichuraiana Rw0G000070 Rw6G005230 Rw6G005240 Rw6G005280 Rw6G005290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 127
Acc65I GGTACC 1 cut(s) 389
AccB1I GGYRCC 1 cut(s) 389
AccI GTMKAC 1 cut(s) 900
AccII CGCG 3 cut(s) 45, 227, 251
AciI CCGC 3 cut(s) 249, 251, 385
AclWI GGATC 3 cut(s) 180, 360, 968
AcuI CTGAAG 1 cut(s) 1302
AfaI GTAC 3 cut(s) 332, 391, 984
AfiI CCNNNNNNNGG 3 cut(s) 88, 753, 798
AflII CTTAAG 1 cut(s) 1244
AflIII ACRYGT 1 cut(s) 555
AgsI TTSAA 2 cut(s) 1048, 1123
AjiI CACGTC 1 cut(s) 556
AjnI CCWGG 4 cut(s) 441, 752, 797, 903
AluBI AGCT 9 cut(s) 106, 124, 286, 633, 913, 965, 1109, 1271, 1427
AluI AGCT 9 cut(s) 106, 124, 286, 633, 913, 965, 1109, 1271, 1427
Alw26I GTCTC 2 cut(s) 1082, 1325
AlwI GGATC 3 cut(s) 180, 360, 968
Ama87I CYCGRG 2 cut(s) 53, 233
AoxI GGCC 5 cut(s) 60, 90, 396, 1128, 1248
ApeKI GCWGC 4 cut(s) 546, 633, 1142, 1409
ArsI GACNNNNNNTTYG 2 cut(s) 1042, 1074
Asp700I GAANNNNTTC 1 cut(s) 993
Asp718I GGTACC 1 cut(s) 389
AspLEI GCGC 2 cut(s) 15, 45
AspS9I GGNCC 2 cut(s) 78, 396
AsuC2I CCSGG 2 cut(s) 394, 733
AsuHPI GGTGA 3 cut(s) 331, 431, 1213
AsuII TTCGAA 1 cut(s) 1187
AvaI CYCGRG 2 cut(s) 53, 233
AvaII GGWCC 1 cut(s) 78
AxyI CCTNAGG 1 cut(s) 1454
BaeGI GKGCMC 1 cut(s) 588
BanI GGYRCC 1 cut(s) 389
BanII GRGCYC 1 cut(s) 767
BbsI GAAGAC 2 cut(s) 245, 1055
BbvCI CCTCAGC 1 cut(s) 1197
BbvI GCAGC 4 cut(s) 533, 620, 1154, 1421
BccI CCATC 6 cut(s) 91, 748, 817, 862, 1045, 1349
BcgI CGANNNNNNTGC 2 cut(s) 408, 442
BciT130I CCWGG 4 cut(s) 443, 754, 799, 905
BclI TGATCA 2 cut(s) 436, 1254
BcnI CCSGG 2 cut(s) 394, 733
BcoDI GTCTC 2 cut(s) 1082, 1325
BfaI CTAG 5 cut(s) 507, 758, 803, 1139, 1350
BfmI CTRYAG 2 cut(s) 562, 634
BfoI RGCGCY 1 cut(s) 16
BfrI CTTAAG 1 cut(s) 1244
BfuAI ACCTGC 1 cut(s) 127
BglII AGATCT 1 cut(s) 942
BisI GCNGC 5 cut(s) 249, 547, 634, 1143, 1410
BlsI GCNGC 5 cut(s) 250, 548, 635, 1144, 1411
Bme1390I CCNGG 6 cut(s) 394, 443, 733, 754, 799, 905
Bme18I GGWCC 1 cut(s) 78
BmeT110I CYCGRG 2 cut(s) 53, 233
BmgBI CACGTC 1 cut(s) 556
BmgT120I GGNCC 2 cut(s) 78, 396
BmiI GGNNCC 4 cut(s) 80, 391, 397, 738
BmrFI CCNGG 6 cut(s) 394, 443, 733, 754, 799, 905
BmrI ACTGGG 1 cut(s) 861
BmsI GCATC 5 cut(s) 500, 670, 760, 805, 1336
BmuI ACTGGG 1 cut(s) 861
BpiI GAAGAC 2 cut(s) 245, 1055
BplI GAGNNNNNCTC 2 cut(s) 1062, 1094
BpmI CTGGAG 1 cut(s) 920
Bpu10I CCTNAGC 2 cut(s) 684, 1197
Bpu14I TTCGAA 1 cut(s) 1187
BpuMI CCSGG 2 cut(s) 394, 733
BsaAI YACGTR 1 cut(s) 982
BsaI GGTCTC 1 cut(s) 1082
BsaJI CCNNGG 7 cut(s) 168, 249, 393, 732, 777, 1011, 1389
Bsc4I CCNNNNNNNGG 3 cut(s) 88, 753, 798
Bse1I ACTGG 7 cut(s) 426, 472, 536, 867, 885, 1417, 1518
Bse21I CCTNAGG 1 cut(s) 1454
BseBI CCWGG 4 cut(s) 443, 754, 799, 905
BseDI CCNNGG 7 cut(s) 168, 249, 393, 732, 777, 1011, 1389
BseGI GGATG 8 cut(s) 716, 743, 749, 785, 794, 874, 889, 1351
BseLI CCNNNNNNNGG 3 cut(s) 88, 753, 798
BseMII CTCAG 7 cut(s) 698, 1095, 1146, 1188, 1236, 1380, 1452
BseNI ACTGG 7 cut(s) 426, 472, 536, 867, 885, 1417, 1518
BseRI GAGGAG 4 cut(s) 116, 296, 781, 1100
BseSI GKGCMC 1 cut(s) 588
BseXI GCAGC 4 cut(s) 533, 620, 1154, 1421
Bsh1236I CGCG 3 cut(s) 45, 227, 251
BshFI GGCC 5 cut(s) 62, 92, 398, 1130, 1250
BshNI GGYRCC 1 cut(s) 389
BsiHKCI CYCGRG 2 cut(s) 53, 233
BsiSI CCGG 2 cut(s) 393, 732
BslFI GGGAC 1 cut(s) 945
BslI CCNNNNNNNGG 3 cut(s) 88, 753, 798
BsmAI GTCTC 2 cut(s) 1082, 1325
BsmFI GGGAC 1 cut(s) 945
BsmI GAATGC 1 cut(s) 471
BsnI GGCC 5 cut(s) 62, 92, 398, 1130, 1250
Bso31I GGTCTC 1 cut(s) 1082
BsoBI CYCGRG 2 cut(s) 53, 233
Bsp119I TTCGAA 1 cut(s) 1187
Bsp1286I GDGCHC 2 cut(s) 588, 767
Bsp143I GATC 9 cut(s) 6, 172, 352, 436, 838, 942, 973, 1254, 1309
Bsp19I CCATGG 1 cut(s) 1389
Bsp68I TCGCGA 1 cut(s) 227
BspACI CCGC 3 cut(s) 249, 251, 385
BspANI GGCC 5 cut(s) 62, 92, 398, 1130, 1250
BspCNI CTCAG 7 cut(s) 697, 1094, 1147, 1189, 1235, 1379, 1451
BspFNI CGCG 3 cut(s) 45, 227, 251
BspHI TCATGA 1 cut(s) 153
BspLI GGNNCC 4 cut(s) 80, 391, 397, 738
BspMAI CTGCAG 1 cut(s) 638
BspMI ACCTGC 1 cut(s) 127
BspPI GGATC 3 cut(s) 180, 360, 968
BspQI GCTCTTC 1 cut(s) 157
BspT104I TTCGAA 1 cut(s) 1187
BspT107I GGYRCC 1 cut(s) 389
BspTI CTTAAG 1 cut(s) 1244
BspTNI GGTCTC 1 cut(s) 1082
BsrI ACTGG 7 cut(s) 426, 472, 536, 867, 885, 1417, 1518
BssECI CCNNGG 7 cut(s) 168, 249, 393, 732, 777, 1011, 1389
BssMI GATC 9 cut(s) 6, 172, 352, 436, 838, 942, 973, 1254, 1309
BssT1I CCWWGG 3 cut(s) 168, 777, 1389
Bst2UI CCWGG 4 cut(s) 443, 754, 799, 905
Bst4CI ACNGT 2 cut(s) 145, 1015
Bst6I CTCTTC 3 cut(s) 157, 335, 984
BstAFI CTTAAG 1 cut(s) 1244
BstBAI YACGTR 1 cut(s) 982
BstBI TTCGAA 1 cut(s) 1187
BstC8I GCNNGC 3 cut(s) 179, 915, 1491
BstDSI CCRYGG 3 cut(s) 249, 1011, 1389
BstENI CCTNNNNNAGG 2 cut(s) 751, 796
BstF5I GGATG 8 cut(s) 716, 743, 749, 785, 794, 874, 889, 1351
BstFNI CGCG 3 cut(s) 45, 227, 251
BstH2I RGCGCY 1 cut(s) 16
BstHHI GCGC 2 cut(s) 15, 45
BstKTI GATC 9 cut(s) 9, 175, 355, 439, 841, 945, 976, 1257, 1312
BstMAI GTCTC 2 cut(s) 1082, 1325
BstMBI GATC 9 cut(s) 6, 172, 352, 436, 838, 942, 973, 1254, 1309
BstMWI GCNNNNNNNGC 6 cut(s) 49, 112, 121, 604, 663, 1277
BstNI CCWGG 4 cut(s) 443, 754, 799, 905
BstNSI RCATGY 2 cut(s) 1493, 1508
BstSCI CCNGG 6 cut(s) 392, 441, 731, 752, 797, 903
BstSFI CTRYAG 2 cut(s) 562, 634
BstSLI GKGCMC 1 cut(s) 588
BstUI CGCG 3 cut(s) 45, 227, 251
BstV1I GCAGC 4 cut(s) 533, 620, 1154, 1421
BstV2I GAAGAC 2 cut(s) 245, 1055
BstX2I RGATCY 1 cut(s) 942
BstYI RGATCY 1 cut(s) 942
Bsu36I CCTNAGG 1 cut(s) 1454
BsuRI GGCC 5 cut(s) 62, 92, 398, 1130, 1250
BtgI CCRYGG 3 cut(s) 249, 1011, 1389
BtrI CACGTC 1 cut(s) 556
BtsCI GGATG 8 cut(s) 716, 743, 749, 785, 794, 874, 889, 1351
BtsI GCAGTG 1 cut(s) 643
BtsIMutI CAGTG 5 cut(s) 75, 419, 465, 643, 878
BtuMI TCGCGA 1 cut(s) 227
BveI ACCTGC 1 cut(s) 127
Cac8I GCNNGC 3 cut(s) 179, 915, 1491
CciI TCATGA 1 cut(s) 153
CfoI GCGC 2 cut(s) 15, 45
Cfr13I GGNCC 2 cut(s) 78, 396
Cfr42I CCGCGG 1 cut(s) 252
Csp6I GTAC 3 cut(s) 331, 390, 983
CviAII CATG 8 cut(s) 154, 861, 1032, 1115, 1252, 1390, 1490, 1505
CviQI GTAC 3 cut(s) 331, 390, 983
DpnI GATC 9 cut(s) 8, 174, 354, 438, 840, 944, 975, 1256, 1311
DpnII GATC 9 cut(s) 6, 172, 352, 436, 838, 942, 973, 1254, 1309
Eam1104I CTCTTC 3 cut(s) 157, 335, 984
EarI CTCTTC 3 cut(s) 157, 335, 984
Eco130I CCWWGG 3 cut(s) 168, 777, 1389
Eco147I AGGCCT 1 cut(s) 62
Eco24I GRGCYC 1 cut(s) 767
Eco31I GGTCTC 1 cut(s) 1082
Eco47I GGWCC 1 cut(s) 78
Eco57I CTGAAG 1 cut(s) 1302
Eco81I CCTNAGG 1 cut(s) 1454
Eco88I CYCGRG 2 cut(s) 53, 233
EcoNI CCTNNNNNAGG 2 cut(s) 751, 796
EcoO109I RGGNCCY 1 cut(s) 78
EcoRII CCWGG 4 cut(s) 441, 752, 797, 903
EcoT14I CCWWGG 3 cut(s) 168, 777, 1389
EcoT38I GRGCYC 1 cut(s) 767
ErhI CCWWGG 3 cut(s) 168, 777, 1389
FaeI CATG 8 cut(s) 157, 864, 1035, 1118, 1255, 1393, 1493, 1508
FalI AAGNNNNNCTT 4 cut(s) 981, 1013, 1447, 1479
FaqI GGGAC 1 cut(s) 945
FatI CATG 8 cut(s) 153, 860, 1031, 1114, 1251, 1389, 1489, 1504
FauI CCCGC 1 cut(s) 378
FbaI TGATCA 2 cut(s) 436, 1254
FblI GTMKAC 1 cut(s) 900
Fnu4HI GCNGC 5 cut(s) 249, 547, 634, 1143, 1410
FokI GGATG 8 cut(s) 703, 730, 736, 772, 781, 861, 896, 1358
FriOI GRGCYC 1 cut(s) 767
Fsp4HI GCNGC 5 cut(s) 249, 547, 634, 1143, 1410
FspBI CTAG 5 cut(s) 507, 758, 803, 1139, 1350
GlaI GCGC 2 cut(s) 14, 44
GluI GCNGC 5 cut(s) 249, 547, 634, 1143, 1410
GsuI CTGGAG 1 cut(s) 920
HaeII RGCGCY 1 cut(s) 16
HaeIII GGCC 5 cut(s) 62, 92, 398, 1130, 1250
HapII CCGG 2 cut(s) 393, 732
HhaI GCGC 2 cut(s) 15, 45
Hin1II CATG 8 cut(s) 157, 864, 1035, 1118, 1255, 1393, 1493, 1508
Hin6I GCGC 2 cut(s) 13, 43
HinP1I GCGC 2 cut(s) 13, 43
HincII GTYRAC 1 cut(s) 901
HindII GTYRAC 1 cut(s) 901
HindIII AAGCTT 3 cut(s) 911, 963, 1269
HpaII CCGG 2 cut(s) 393, 732
HphI GGTGA 3 cut(s) 331, 431, 1213
Hpy166II GTNNAC 2 cut(s) 30, 901
Hpy188III TCNNGA 9 cut(s) 55, 154, 204, 226, 233, 235, 482, 937, 1330
Hpy8I GTNNAC 2 cut(s) 30, 901
Hpy99I CGWCG 1 cut(s) 268
HpyAV CCTTC 8 cut(s) 52, 91, 289, 355, 364, 922, 1117, 1155
HpyCH4III ACNGT 2 cut(s) 145, 1015
HpyCH4IV ACGT 2 cut(s) 555, 981
HpyCH4V TGCA 7 cut(s) 495, 549, 636, 666, 917, 1489, 1493
HpyF10VI GCNNNNNNNGC 6 cut(s) 49, 112, 121, 604, 663, 1277
HpySE526I ACGT 2 cut(s) 555, 981
Hsp92II CATG 8 cut(s) 157, 864, 1035, 1118, 1255, 1393, 1493, 1508
HspAI GCGC 2 cut(s) 13, 43
KpnI GGTACC 1 cut(s) 393
Ksp22I TGATCA 2 cut(s) 436, 1254
KspI CCGCGG 1 cut(s) 252
Kzo9I GATC 9 cut(s) 6, 172, 352, 436, 838, 942, 973, 1254, 1309
LguI GCTCTTC 1 cut(s) 157
LmnI GCTCC 3 cut(s) 103, 283, 736
Lsp1109I GCAGC 4 cut(s) 533, 620, 1154, 1421
LweI GCATC 5 cut(s) 500, 670, 760, 805, 1336
MaeI CTAG 5 cut(s) 507, 758, 803, 1139, 1350
MaeII ACGT 2 cut(s) 555, 981
MaeIII GTNAC 2 cut(s) 139, 832
MalI GATC 9 cut(s) 8, 174, 354, 438, 840, 944, 975, 1256, 1311
MboI GATC 9 cut(s) 6, 172, 352, 436, 838, 942, 973, 1254, 1309
MfeI CAATTG 1 cut(s) 698
MflI RGATCY 1 cut(s) 942
MhlI GDGCHC 2 cut(s) 588, 767
MluCI AATT 5 cut(s) 648, 667, 690, 698, 1212
MlyI GAGTC 4 cut(s) 25, 205, 223, 927
MmeI TCCRAC 2 cut(s) 1158, 1245
MroXI GAANNNNTTC 1 cut(s) 993
MseI TTAA 3 cut(s) 603, 1245, 1522
MslI CAYNNNNRTG 1 cut(s) 859
MspA1I CMGCKG 2 cut(s) 251, 633
MspCI CTTAAG 1 cut(s) 1244
MspI CCGG 2 cut(s) 393, 732
MspR9I CCNGG 6 cut(s) 394, 443, 733, 754, 799, 905
MunI CAATTG 1 cut(s) 698
Mva1269I GAATGC 1 cut(s) 471
MvaI CCWGG 4 cut(s) 443, 754, 799, 905
MvnI CGCG 3 cut(s) 45, 227, 251
MwoI GCNNNNNNNGC 6 cut(s) 49, 112, 121, 604, 663, 1277
NciI CCSGG 2 cut(s) 394, 733
NcoI CCATGG 1 cut(s) 1389
NdeII GATC 9 cut(s) 6, 172, 352, 436, 838, 942, 973, 1254, 1309
NlaIII CATG 8 cut(s) 157, 864, 1035, 1118, 1255, 1393, 1493, 1508
NlaIV GGNNCC 4 cut(s) 80, 391, 397, 738
NmuCI GTSAC 1 cut(s) 139
NruI TCGCGA 1 cut(s) 227
NspI RCATGY 2 cut(s) 1493, 1508
NspV TTCGAA 1 cut(s) 1187
PaeI GCATGC 1 cut(s) 1493
PaeR7I CTCGAG 2 cut(s) 53, 233
PagI TCATGA 1 cut(s) 153
PceI AGGCCT 1 cut(s) 62
PciSI GCTCTTC 1 cut(s) 157
PcsI WCGNNNNNNNCGW 2 cut(s) 92, 231
PctI GAATGC 1 cut(s) 471
PdmI GAANNNNTTC 1 cut(s) 993
PfeI GAWTC 7 cut(s) 37, 259, 313, 517, 782, 1028, 1322
PkrI GCNGC 5 cut(s) 250, 548, 635, 1144, 1411
PleI GAGTC 4 cut(s) 25, 205, 223, 927
PpsI GAGTC 4 cut(s) 25, 205, 223, 927
Ppu21I YACGTR 1 cut(s) 982
PpuMI RGGWCCY 1 cut(s) 78
Psp5II RGGWCCY 1 cut(s) 78
Psp6I CCWGG 4 cut(s) 441, 752, 797, 903
PspGI CCWGG 4 cut(s) 441, 752, 797, 903
PspN4I GGNNCC 4 cut(s) 80, 391, 397, 738
PspPI GGNCC 2 cut(s) 78, 396
PspPPI RGGWCCY 1 cut(s) 78
PstI CTGCAG 1 cut(s) 638
PsuI RGATCY 1 cut(s) 942
PvuII CAGCTG 1 cut(s) 633
RruI TCGCGA 1 cut(s) 227
RsaI GTAC 3 cut(s) 332, 391, 984
RsaNI GTAC 3 cut(s) 331, 390, 983
RseI CAYNNNNRTG 1 cut(s) 859
SacII CCGCGG 1 cut(s) 252
SalI GTCGAC 1 cut(s) 899
SapI GCTCTTC 1 cut(s) 157
SaqAI TTAA 3 cut(s) 603, 1245, 1522
SatI GCNGC 5 cut(s) 249, 547, 634, 1143, 1410
Sau3AI GATC 9 cut(s) 6, 172, 352, 436, 838, 942, 973, 1254, 1309
Sau96I GGNCC 2 cut(s) 78, 396
SchI GAGTC 4 cut(s) 25, 205, 223, 927
ScrFI CCNGG 6 cut(s) 394, 443, 733, 754, 799, 905
SduI GDGCHC 2 cut(s) 588, 767
SfaNI GCATC 5 cut(s) 500, 670, 760, 805, 1336
SfcI CTRYAG 2 cut(s) 562, 634
Sfr274I CTCGAG 2 cut(s) 53, 233
Sfr303I CCGCGG 1 cut(s) 252
SfuI TTCGAA 1 cut(s) 1187
SgrBI CCGCGG 1 cut(s) 252
SinI GGWCC 1 cut(s) 78
SlaI CTCGAG 2 cut(s) 53, 233
SmiMI CAYNNNNRTG 1 cut(s) 859
SmlI CTYRAG 3 cut(s) 53, 233, 1244
SmoI CTYRAG 3 cut(s) 53, 233, 1244
SphI GCATGC 1 cut(s) 1493
Sse9I AATT 5 cut(s) 648, 667, 690, 698, 1212
SseBI AGGCCT 1 cut(s) 62
SsiI CCGC 3 cut(s) 249, 251, 385
SspMI CTAG 5 cut(s) 507, 758, 803, 1139, 1350
StuI AGGCCT 1 cut(s) 62
StyD4I CCNGG 6 cut(s) 392, 441, 731, 752, 797, 903
StyI CCWWGG 3 cut(s) 168, 777, 1389
TaaI ACNGT 2 cut(s) 145, 1015
TaiI ACGT 2 cut(s) 558, 984
TasI AATT 5 cut(s) 648, 667, 690, 698, 1212
TauI GCSGC 1 cut(s) 251
TfiI GAWTC 7 cut(s) 37, 259, 313, 517, 782, 1028, 1322
Tru1I TTAA 3 cut(s) 603, 1245, 1522
Tru9I TTAA 3 cut(s) 603, 1245, 1522
TscAI CASTG 5 cut(s) 75, 426, 472, 643, 885
TseFI GTSAC 1 cut(s) 139
TseI GCWGC 4 cut(s) 546, 633, 1142, 1409
Tsp45I GTSAC 1 cut(s) 139
TspDTI ATGAA 8 cut(s) 142, 170, 593, 660, 702, 774, 863, 1020
TspGWI ACGGA 2 cut(s) 252, 1163
TspRI CASTG 5 cut(s) 75, 426, 472, 643, 885
Vha464I CTTAAG 1 cut(s) 1244
VpaK11BI GGWCC 1 cut(s) 78
XagI CCTNNNNNAGG 2 cut(s) 751, 796
XceI RCATGY 2 cut(s) 1493, 1508
XhoI CTCGAG 2 cut(s) 53, 233
XmiI GTMKAC 1 cut(s) 900
XmnI GAANNNNTTC 1 cut(s) 993
XspI CTAG 5 cut(s) 507, 758, 803, 1139, 1350
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.