Rmu_sc0001257.1_g000008

histone deacetylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001257.1
OG0000538
Physical Location & Seq
Reverse (-)
21756 .. 22145
390 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001257.1_g000008.1.cds

Sequence Viewer

Length: 390 bp
atgattggtgatgttattgatctcttgtctaagccatttcctagcatcaatgttcatccacagttggatgctcagtcgtttggaggccaggatgagcttgcattggctgagggactccggaagatctttgattgcgggttaaaggctctagctgatcccaaagtgcaagaagagtttctcctttactcagccacactgctatcagctgagtcatgcccctcagaattgaaggttaacctttcatcattcaggtgcaatctttccgaggaaacgtctgctttcgtcaatactcaagatgagttgaaggtggcctcagacttattagcctcaatcactcagaagaagtttgtggtgcggcaacaaacttcaaagtatgatgaggtgaagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-UBP

Protein Analysis

129

Amino Acids

14.21

Weight (kDa)

4.73

Isoelectric Point (pI)

40.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000538)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g04050 FvH4_2g04050 FvH4_2g04050 FvH4_2g04050 FvH4_2g04050
rosa_chinensis RchiOBHm_Chr6g0253231 RchiOBHm_Chr6g0253251 RchiOBHm_Chr6g0253261 RchiOBHm_Chr6g0253271 RchiOBHm_Chr6g0253291 RchiOBHm_Chr6g0253321 RchiOBHm_Chr6g0253331 RchiOBHm_Chr6g0253341 RchiOBHm_Chr6g0253371 RchiOBHm_Chr6g0253401
rosa_laevigata RLG00000015022 RLG00000015023 RLG00000015024 RLG00000015027 RLG00000015028 RLG00000015030 RLG00000015031 RLG00000015034 RLG00000015035 RLG00000015038 RLG00000015041
rosa_multiflora Rmu_sc0001257.1_g000004 Rmu_sc0001257.1_g000008 Rmu_sc0001257.1_g000014 Rmu_sc0001257.1_g000016 Rmu_sc0001257.1_g000019 Rmu_sc0001257.1_g000026 Rmu_sc0002560.1_g000013 Rmu_sc0002560.1_g000020 Rmu_sc0002560.1_g000021 Rmu_sc0003855.1_g000005 Rmu_sc0003855.1_g000011 Rmu_sc0003898.1_g000003 Rmu_sc0003898.1_g000005 Rmu_sc0003898.1_g000016 Rmu_sc0003898.1_g000017 Rmu_sc0005439.1_g000007 Rmu_sc0005439.1_g000014 Rmu_sc0005439.1_g000021
rosa_roxburghii Rroxscaffold_7G00211930 Rroxscaffold_7G00211940 Rroxscaffold_7G00211960 Rroxscaffold_7G00211980 Rroxscaffold_7G00211990 Rroxscaffold_7G00212000 Rroxscaffold_7G00212050 Rroxscaffold_7G00212060 Rroxscaffold_7G00212070 Rroxscaffold_7G00212080 Rroxscaffold_7G00212160
rosa_rugosa Rorug05G0542900 Rorug05G0542900 Rorug05G0543000 Rorug05G0543100 Rorug05G0543100 Rorug05G0543200 Rorug05G0543300 Rorug05G0543400 Rorug05G0543400 Rorug05G0543500 Rorug05G0543600 Rorug05G0543700
rosa_samantha Rh6CG050000 Rh6DG045200 Rh6DG045500 Rh6DG045600 Rh6DG045700 Rh6DG045800 Rh6DG046200 Rh6DG046300 Rh6DG046400 Rh6DG046500 Rh6DG046700 Rh6DG046800
rosa_wichuraiana Rw0G000070 Rw6G005230 Rw6G005240 Rw6G005280 Rw6G005290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 117
AciI CCGC 2 cut(s) 135, 355
AclWI GGATC 1 cut(s) 149
AgsI TTSAA 3 cut(s) 229, 304, 369
AjnI CCWGG 1 cut(s) 87
AluBI AGCT 3 cut(s) 97, 152, 206
AluI AGCT 3 cut(s) 97, 152, 206
AlwI GGATC 1 cut(s) 149
Aor13HI TCCGGA 1 cut(s) 117
AoxI GGCC 2 cut(s) 85, 309
Asp700I GAANNNNTTC 1 cut(s) 174
AsuHPI GGTGA 1 cut(s) 20
BbvCI CCTCAGC 1 cut(s) 108
BciT130I CCWGG 1 cut(s) 89
BfaI CTAG 2 cut(s) 42, 149
BglII AGATCT 1 cut(s) 123
BisI GCNGC 1 cut(s) 356
BlsI GCNGC 1 cut(s) 357
Bme1390I CCNGG 1 cut(s) 89
BmrFI CCNGG 1 cut(s) 89
BmsI GCATC 2 cut(s) 54, 58
Bpu10I CCTNAGC 1 cut(s) 108
BpuEI CTTGAG 1 cut(s) 276
BsaJI CCNNGG 1 cut(s) 264
BsaWI WCCGGW 1 cut(s) 117
BseAI TCCGGA 1 cut(s) 117
BseBI CCWGG 1 cut(s) 89
BseDI CCNNGG 1 cut(s) 264
BseGI GGATG 3 cut(s) 55, 73, 97
BseMII CTCAG 7 cut(s) 86, 99, 198, 201, 234, 327, 350
BshFI GGCC 2 cut(s) 87, 311
BsiSI CCGG 1 cut(s) 118
BslFI GGGAC 1 cut(s) 126
BsmFI GGGAC 1 cut(s) 126
BsnI GGCC 2 cut(s) 87, 311
Bsp13I TCCGGA 1 cut(s) 117
Bsp143I GATC 3 cut(s) 19, 123, 154
BspACI CCGC 2 cut(s) 135, 355
BspANI GGCC 2 cut(s) 87, 311
BspCNI CTCAG 7 cut(s) 85, 100, 199, 200, 233, 326, 349
BspEI TCCGGA 1 cut(s) 117
BspPI GGATC 1 cut(s) 149
BssECI CCNNGG 1 cut(s) 264
BssMI GATC 3 cut(s) 19, 123, 154
Bst2UI CCWGG 1 cut(s) 89
Bst4CI ACNGT 1 cut(s) 63
Bst6I CTCTTC 1 cut(s) 165
BstC8I GCNNGC 1 cut(s) 99
BstDEI CTNAG 8 cut(s) 30, 72, 108, 187, 207, 220, 313, 336
BstF5I GGATG 3 cut(s) 55, 73, 97
BstKTI GATC 3 cut(s) 22, 126, 157
BstMBI GATC 3 cut(s) 19, 123, 154
BstNI CCWGG 1 cut(s) 89
BstSCI CCNGG 1 cut(s) 87
BstX2I RGATCY 1 cut(s) 123
BstYI RGATCY 1 cut(s) 123
BsuRI GGCC 2 cut(s) 87, 311
BtsCI GGATG 3 cut(s) 55, 73, 97
BtsI GCAGTG 1 cut(s) 194
BtsIMutI CAGTG 1 cut(s) 194
Cac8I GCNNGC 1 cut(s) 99
CviAII CATG 1 cut(s) 213
DdeI CTNAG 8 cut(s) 30, 72, 108, 187, 207, 220, 313, 336
DpnI GATC 3 cut(s) 21, 125, 156
DpnII GATC 3 cut(s) 19, 123, 154
Eam1104I CTCTTC 1 cut(s) 165
EarI CTCTTC 1 cut(s) 165
EcoRII CCWGG 1 cut(s) 87
FaeI CATG 1 cut(s) 216
FaiI YATR 2 cut(s) 214, 375
FaqI GGGAC 1 cut(s) 126
FatI CATG 1 cut(s) 212
FauI CCCGC 1 cut(s) 128
Fnu4HI GCNGC 1 cut(s) 356
FokI GGATG 3 cut(s) 42, 80, 104
Fsp4HI GCNGC 1 cut(s) 356
FspBI CTAG 2 cut(s) 42, 149
GluI GCNGC 1 cut(s) 356
HaeIII GGCC 2 cut(s) 87, 311
HapII CCGG 1 cut(s) 118
Hin1II CATG 1 cut(s) 216
HincII GTYRAC 1 cut(s) 235
HindII GTYRAC 1 cut(s) 235
HinfI GANTC 2 cut(s) 114, 209
HpaI GTTAAC 1 cut(s) 235
HpaII CCGG 1 cut(s) 118
HphI GGTGA 1 cut(s) 20
Hpy166II GTNNAC 1 cut(s) 235
Hpy188I TCNGA 4 cut(s) 223, 265, 316, 339
Hpy188III TCNNGA 2 cut(s) 118, 293
Hpy8I GTNNAC 1 cut(s) 235
HpyAV CCTTC 2 cut(s) 223, 298
HpyCH4III ACNGT 1 cut(s) 63
HpyCH4IV ACGT 1 cut(s) 272
HpyCH4V TGCA 3 cut(s) 101, 166, 255
HpyF3I CTNAG 8 cut(s) 30, 72, 108, 187, 207, 220, 313, 336
HpySE526I ACGT 1 cut(s) 272
Hsp92II CATG 1 cut(s) 216
Kpn2I TCCGGA 1 cut(s) 117
KspAI GTTAAC 1 cut(s) 235
Kzo9I GATC 3 cut(s) 19, 123, 154
LpnPI CCDG 4 cut(s) 74, 101, 131, 235
LweI GCATC 2 cut(s) 54, 58
MaeI CTAG 2 cut(s) 42, 149
MaeII ACGT 1 cut(s) 272
MalI GATC 3 cut(s) 21, 125, 156
MboI GATC 3 cut(s) 19, 123, 154
MboII GAAGA 3 cut(s) 133, 182, 352
MflI RGATCY 1 cut(s) 123
MluCI AATT 1 cut(s) 224
MlyI GAGTC 2 cut(s) 108, 218
MmeI TCCRAC 1 cut(s) 45
MnlI CCTC 7 cut(s) 77, 103, 229, 259, 322, 337, 373
MroI TCCGGA 1 cut(s) 117
MroXI GAANNNNTTC 1 cut(s) 174
MseI TTAA 2 cut(s) 140, 234
MslI CAYNNNNRTG 1 cut(s) 250
MspA1I CMGCKG 1 cut(s) 206
MspI CCGG 1 cut(s) 118
MspR9I CCNGG 1 cut(s) 89
MvaI CCWGG 1 cut(s) 89
NdeII GATC 3 cut(s) 19, 123, 154
NlaIII CATG 1 cut(s) 216
PdmI GAANNNNTTC 1 cut(s) 174
PkrI GCNGC 1 cut(s) 357
PleI GAGTC 2 cut(s) 108, 217
PpsI GAGTC 2 cut(s) 108, 217
Psp6I CCWGG 1 cut(s) 87
PspGI CCWGG 1 cut(s) 87
PsuI RGATCY 1 cut(s) 123
PvuII CAGCTG 1 cut(s) 206
RseI CAYNNNNRTG 1 cut(s) 250
SaqAI TTAA 2 cut(s) 140, 234
SatI GCNGC 1 cut(s) 356
Sau3AI GATC 3 cut(s) 19, 123, 154
SchI GAGTC 2 cut(s) 108, 218
ScrFI CCNGG 1 cut(s) 89
SetI ASST 9 cut(s) 99, 154, 208, 234, 240, 254, 275, 309, 384
SfaNI GCATC 2 cut(s) 54, 58
SmiMI CAYNNNNRTG 1 cut(s) 250
SmlI CTYRAG 1 cut(s) 291
SmoI CTYRAG 1 cut(s) 291
Sse9I AATT 1 cut(s) 224
SsiI CCGC 2 cut(s) 135, 355
SspMI CTAG 2 cut(s) 42, 149
StyD4I CCNGG 1 cut(s) 87
TaaI ACNGT 1 cut(s) 63
TaiI ACGT 1 cut(s) 275
TasI AATT 1 cut(s) 224
TauI GCSGC 1 cut(s) 358
Tru1I TTAA 2 cut(s) 140, 234
Tru9I TTAA 2 cut(s) 140, 234
TscAI CASTG 1 cut(s) 201
TspDTI ATGAA 2 cut(s) 44, 231
TspRI CASTG 1 cut(s) 201
XmnI GAANNNNTTC 1 cut(s) 174
XspI CTAG 2 cut(s) 42, 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.