Rh6DG045600

histone deacetylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000538
Physical Location & Seq
Reverse (-)
4811579 .. 4812265
687 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG045600.1

Sequence Viewer

Length: 687 bp
ATGATTGTTGATGTTATTGATCTCTTGTCTAAACCATTTCCTAGCATCAATGTTCATCCACAGTTGGATGCTCAGTCATTTGTAGGCCAGGATGAACTTGCATTGGCTAAGGAGGGACTGCAAAAGATCTTTGATAACGGGTTAATAGCTGTAGCTGATCCCAAAGTGCAAGAAAAGTTTCTGCTTTACTCAGCCACACTGCTATCAGCCGAGTCATGCCCATCAGAATTGAAGGTTAACTTCTCATCATTCAGATGCAATCTTCCGGAGGAAACCTCTGCTTTCATCAACGCTCAAGATGAGTTGAAGGTGGCCTCAGACTTATCAGCCTCAATCACTCAGAAGAAGTTTGTAGTGCGGCAACAAACTTCAAAGTATGATGAGGTGAAGAAAGAAATTGTTGCCTCGGACGAGAAAGTTTCTAACTTCAAGGCCATGATCAAAGAATTGGAAGCACAAATCAAAAGGTTGGAAGCTTGTTTAGCCACGGAAGAGAGCAACAGAGCAAAGAATGATGAGGCTATCGATTCCATCGAGAAACAAGTCACCACCGCGAGAGATGGATTGGTCTCGGACTTGGCACAAGTGTCTTCCATCAAAGGATCGACCGAAGCAGCTAACGAGTTAGTAGCTCGAAAACAGTCGGACTGGGATAACTTAAAGCTTAGTTTTACCAAGTTTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-UBP

Protein Analysis

228

Amino Acids

25.18

Weight (kDa)

4.91

Isoelectric Point (pI)

36.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000538)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g04050 FvH4_2g04050 FvH4_2g04050 FvH4_2g04050 FvH4_2g04050
rosa_chinensis RchiOBHm_Chr6g0253231 RchiOBHm_Chr6g0253251 RchiOBHm_Chr6g0253261 RchiOBHm_Chr6g0253271 RchiOBHm_Chr6g0253291 RchiOBHm_Chr6g0253321 RchiOBHm_Chr6g0253331 RchiOBHm_Chr6g0253341 RchiOBHm_Chr6g0253371 RchiOBHm_Chr6g0253401
rosa_laevigata RLG00000015022 RLG00000015023 RLG00000015024 RLG00000015027 RLG00000015028 RLG00000015030 RLG00000015031 RLG00000015034 RLG00000015035 RLG00000015038 RLG00000015041
rosa_multiflora Rmu_sc0001257.1_g000004 Rmu_sc0001257.1_g000008 Rmu_sc0001257.1_g000014 Rmu_sc0001257.1_g000016 Rmu_sc0001257.1_g000019 Rmu_sc0001257.1_g000026 Rmu_sc0002560.1_g000013 Rmu_sc0002560.1_g000020 Rmu_sc0002560.1_g000021 Rmu_sc0003855.1_g000005 Rmu_sc0003855.1_g000011 Rmu_sc0003898.1_g000003 Rmu_sc0003898.1_g000005 Rmu_sc0003898.1_g000016 Rmu_sc0003898.1_g000017 Rmu_sc0005439.1_g000007 Rmu_sc0005439.1_g000014 Rmu_sc0005439.1_g000021
rosa_roxburghii Rroxscaffold_7G00211930 Rroxscaffold_7G00211940 Rroxscaffold_7G00211960 Rroxscaffold_7G00211980 Rroxscaffold_7G00211990 Rroxscaffold_7G00212000 Rroxscaffold_7G00212050 Rroxscaffold_7G00212060 Rroxscaffold_7G00212070 Rroxscaffold_7G00212080 Rroxscaffold_7G00212160
rosa_rugosa Rorug05G0542900 Rorug05G0542900 Rorug05G0543000 Rorug05G0543100 Rorug05G0543100 Rorug05G0543200 Rorug05G0543300 Rorug05G0543400 Rorug05G0543400 Rorug05G0543500 Rorug05G0543600 Rorug05G0543700
rosa_samantha Rh6CG050000 Rh6DG045200 Rh6DG045500 Rh6DG045600 Rh6DG045700 Rh6DG045800 Rh6DG046200 Rh6DG046300 Rh6DG046400 Rh6DG046500 Rh6DG046700 Rh6DG046800
rosa_wichuraiana Rw0G000070 Rw6G005230 Rw6G005240 Rw6G005280 Rw6G005290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 554
AccIII TCCGGA 1 cut(s) 265
AciI CCGC 2 cut(s) 358, 552
AclWI GGATC 2 cut(s) 152, 610
AgsI TTSAA 4 cut(s) 232, 307, 372, 430
AjnI CCWGG 1 cut(s) 87
AluBI AGCT 6 cut(s) 149, 155, 476, 617, 632, 664
AluI AGCT 6 cut(s) 149, 155, 476, 617, 632, 664
Alw26I GTCTC 1 cut(s) 574
AlwI GGATC 2 cut(s) 152, 610
Aor13HI TCCGGA 1 cut(s) 265
AoxI GGCC 3 cut(s) 85, 312, 432
ApeKI GCWGC 1 cut(s) 614
Asp700I GAANNNNTTC 1 cut(s) 177
AsuHPI GGTGA 2 cut(s) 397, 538
BbsI GAAGAC 1 cut(s) 582
BbvI GCAGC 1 cut(s) 626
BccI CCATC 4 cut(s) 229, 539, 554, 602
BciT130I CCWGG 1 cut(s) 89
BclI TGATCA 1 cut(s) 438
BcoDI GTCTC 1 cut(s) 574
BfaI CTAG 1 cut(s) 42
BfmI CTRYAG 1 cut(s) 150
BglII AGATCT 1 cut(s) 126
BisI GCNGC 2 cut(s) 359, 615
BlsI GCNGC 2 cut(s) 360, 616
Bme1390I CCNGG 1 cut(s) 89
BmrFI CCNGG 1 cut(s) 89
BmrI ACTGGG 1 cut(s) 658
BmsI GCATC 3 cut(s) 54, 58, 245
BmuI ACTGGG 1 cut(s) 658
BpiI GAAGAC 1 cut(s) 582
BplI GAGNNNNNCTC 2 cut(s) 260, 292
Bpu10I CCTNAGC 1 cut(s) 108
BpuEI CTTGAG 1 cut(s) 279
Bsa29I ATCGAT 1 cut(s) 525
BsaI GGTCTC 1 cut(s) 574
BsaJI CCNNGG 2 cut(s) 405, 486
BsaWI WCCGGW 1 cut(s) 265
Bse1I ACTGG 1 cut(s) 653
BseAI TCCGGA 1 cut(s) 265
BseBI CCWGG 1 cut(s) 89
BseCI ATCGAT 1 cut(s) 525
BseDI CCNNGG 2 cut(s) 405, 486
BseGI GGATG 3 cut(s) 55, 73, 97
BseMII CTCAG 4 cut(s) 86, 204, 330, 353
BseNI ACTGG 1 cut(s) 653
BseXI GCAGC 1 cut(s) 626
Bsh1236I CGCG 1 cut(s) 554
Bsh1285I CGRYCG 1 cut(s) 609
BshFI GGCC 3 cut(s) 87, 314, 434
BshVI ATCGAT 1 cut(s) 525
BsiEI CGRYCG 1 cut(s) 609
BsiSI CCGG 1 cut(s) 266
BslFI GGGAC 1 cut(s) 129
BsmAI GTCTC 1 cut(s) 574
BsmFI GGGAC 1 cut(s) 129
BsnI GGCC 3 cut(s) 87, 314, 434
Bso31I GGTCTC 1 cut(s) 574
Bsp13I TCCGGA 1 cut(s) 265
Bsp143I GATC 5 cut(s) 19, 126, 157, 438, 602
BspACI CCGC 2 cut(s) 358, 552
BspANI GGCC 3 cut(s) 87, 314, 434
BspCNI CTCAG 4 cut(s) 85, 203, 329, 352
BspDI ATCGAT 1 cut(s) 525
BspEI TCCGGA 1 cut(s) 265
BspFNI CGCG 1 cut(s) 554
BspPI GGATC 2 cut(s) 152, 610
BspTNI GGTCTC 1 cut(s) 574
BsrI ACTGG 1 cut(s) 653
BssECI CCNNGG 2 cut(s) 405, 486
BssMI GATC 5 cut(s) 19, 126, 157, 438, 602
Bst2UI CCWGG 1 cut(s) 89
Bst4CI ACNGT 2 cut(s) 63, 642
Bst6I CTCTTC 1 cut(s) 486
BstDEI CTNAG 6 cut(s) 72, 108, 190, 316, 339, 665
BstDSI CCRYGG 1 cut(s) 486
BstF5I GGATG 3 cut(s) 55, 73, 97
BstFNI CGCG 1 cut(s) 554
BstKTI GATC 5 cut(s) 22, 129, 160, 441, 605
BstMAI GTCTC 1 cut(s) 574
BstMBI GATC 5 cut(s) 19, 126, 157, 438, 602
BstMCI CGRYCG 1 cut(s) 609
BstMWI GCNNNNNNNGC 1 cut(s) 482
BstNI CCWGG 1 cut(s) 89
BstSCI CCNGG 1 cut(s) 87
BstSFI CTRYAG 1 cut(s) 150
BstUI CGCG 1 cut(s) 554
BstV1I GCAGC 1 cut(s) 626
BstV2I GAAGAC 1 cut(s) 582
BstX2I RGATCY 1 cut(s) 126
BstYI RGATCY 1 cut(s) 126
Bsu15I ATCGAT 1 cut(s) 525
BsuRI GGCC 3 cut(s) 87, 314, 434
BsuTUI ATCGAT 1 cut(s) 525
BtgI CCRYGG 1 cut(s) 486
BtsCI GGATG 3 cut(s) 55, 73, 97
BtsI GCAGTG 1 cut(s) 197
BtsIMutI CAGTG 1 cut(s) 197
ClaI ATCGAT 1 cut(s) 525
CviAII CATG 3 cut(s) 216, 436, 684
DdeI CTNAG 6 cut(s) 72, 108, 190, 316, 339, 665
DpnI GATC 5 cut(s) 21, 128, 159, 440, 604
DpnII GATC 5 cut(s) 19, 126, 157, 438, 602
Eam1104I CTCTTC 1 cut(s) 486
EarI CTCTTC 1 cut(s) 486
Eco31I GGTCTC 1 cut(s) 574
EcoRII CCWGG 1 cut(s) 87
FaeI CATG 3 cut(s) 219, 439, 687
FaiI YATR 4 cut(s) 217, 378, 437, 685
FalI AAGNNNNNCTT 2 cut(s) 224, 256
FaqI GGGAC 1 cut(s) 129
FatI CATG 3 cut(s) 215, 435, 683
FbaI TGATCA 1 cut(s) 438
Fnu4HI GCNGC 2 cut(s) 359, 615
FokI GGATG 3 cut(s) 42, 80, 104
Fsp4HI GCNGC 2 cut(s) 359, 615
FspBI CTAG 1 cut(s) 42
GluI GCNGC 2 cut(s) 359, 615
HaeIII GGCC 3 cut(s) 87, 314, 434
HapII CCGG 1 cut(s) 266
Hin1II CATG 3 cut(s) 219, 439, 687
HincII GTYRAC 1 cut(s) 238
HindII GTYRAC 1 cut(s) 238
HindIII AAGCTT 2 cut(s) 474, 662
HinfI GANTC 2 cut(s) 212, 527
HpaI GTTAAC 1 cut(s) 238
HpaII CCGG 1 cut(s) 266
HphI GGTGA 2 cut(s) 397, 538
Hpy166II GTNNAC 1 cut(s) 238
Hpy188I TCNGA 7 cut(s) 226, 254, 319, 342, 409, 574, 646
Hpy188III TCNNGA 3 cut(s) 266, 296, 535
Hpy8I GTNNAC 1 cut(s) 238
HpyAV CCTTC 2 cut(s) 226, 301
HpyCH4III ACNGT 2 cut(s) 63, 642
HpyCH4V TGCA 5 cut(s) 101, 121, 169, 258, 683
HpyF10VI GCNNNNNNNGC 1 cut(s) 482
HpyF3I CTNAG 6 cut(s) 72, 108, 190, 316, 339, 665
Hsp92II CATG 3 cut(s) 219, 439, 687
Kpn2I TCCGGA 1 cut(s) 265
Ksp22I TGATCA 1 cut(s) 438
KspAI GTTAAC 1 cut(s) 238
Kzo9I GATC 5 cut(s) 19, 126, 157, 438, 602
LpnPI CCDG 4 cut(s) 74, 101, 279, 634
Lsp1109I GCAGC 1 cut(s) 626
LweI GCATC 3 cut(s) 54, 58, 245
MaeI CTAG 1 cut(s) 42
MaeIII GTNAC 1 cut(s) 544
MalI GATC 5 cut(s) 21, 128, 159, 440, 604
MboI GATC 5 cut(s) 19, 126, 157, 438, 602
MboII GAAGA 5 cut(s) 254, 355, 400, 503, 582
MflI RGATCY 1 cut(s) 126
MluCI AATT 3 cut(s) 227, 396, 446
MlyI GAGTC 1 cut(s) 221
MmeI TCCRAC 3 cut(s) 45, 450, 624
MnlI CCTC 8 cut(s) 106, 262, 286, 325, 340, 376, 415, 511
MroI TCCGGA 1 cut(s) 265
MroXI GAANNNNTTC 1 cut(s) 177
MseI TTAA 3 cut(s) 143, 237, 659
MslI CAYNNNNRTG 1 cut(s) 253
MspI CCGG 1 cut(s) 266
MspR9I CCNGG 1 cut(s) 89
MvaI CCWGG 1 cut(s) 89
MvnI CGCG 1 cut(s) 554
MwoI GCNNNNNNNGC 1 cut(s) 482
NdeII GATC 5 cut(s) 19, 126, 157, 438, 602
NlaIII CATG 3 cut(s) 219, 439, 687
NmeAIII GCCGAG 1 cut(s) 235
NmuCI GTSAC 1 cut(s) 544
PcsI WCGNNNNNNNCGW 1 cut(s) 531
PdmI GAANNNNTTC 1 cut(s) 177
PfeI GAWTC 1 cut(s) 527
PkrI GCNGC 2 cut(s) 360, 616
PleI GAGTC 1 cut(s) 220
PpsI GAGTC 1 cut(s) 220
Psp6I CCWGG 1 cut(s) 87
PspGI CCWGG 1 cut(s) 87
PsuI RGATCY 1 cut(s) 126
RseI CAYNNNNRTG 1 cut(s) 253
SaqAI TTAA 3 cut(s) 143, 237, 659
SatI GCNGC 2 cut(s) 359, 615
Sau3AI GATC 5 cut(s) 19, 126, 157, 438, 602
SchI GAGTC 1 cut(s) 221
ScrFI CCNGG 1 cut(s) 89
SfaNI GCATC 3 cut(s) 54, 58, 245
SfcI CTRYAG 1 cut(s) 150
SmiMI CAYNNNNRTG 1 cut(s) 253
SmlI CTYRAG 1 cut(s) 294
SmoI CTYRAG 1 cut(s) 294
Sse9I AATT 3 cut(s) 227, 396, 446
SsiI CCGC 2 cut(s) 358, 552
SspMI CTAG 1 cut(s) 42
StyD4I CCNGG 1 cut(s) 87
TaaI ACNGT 2 cut(s) 63, 642
TaqI TCGA 4 cut(s) 525, 534, 605, 634
TaqII GACCGA 1 cut(s) 623
TasI AATT 3 cut(s) 227, 396, 446
TauI GCSGC 1 cut(s) 361
TfiI GAWTC 1 cut(s) 527
Tru1I TTAA 3 cut(s) 143, 237, 659
Tru9I TTAA 3 cut(s) 143, 237, 659
TscAI CASTG 1 cut(s) 204
TseFI GTSAC 1 cut(s) 544
TseI GCWGC 1 cut(s) 614
Tsp45I GTSAC 1 cut(s) 544
TspDTI ATGAA 3 cut(s) 44, 108, 274
TspGWI ACGGA 1 cut(s) 503
TspRI CASTG 1 cut(s) 204
XmnI GAANNNNTTC 1 cut(s) 177
XspI CTAG 1 cut(s) 42
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.