RchiOBHm_Chr6g0253231

histone deacetylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000538
Physical Location & Seq
Reverse (-)
8358621 .. 8359548
928 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22706

Sequence Viewer

Length: 831 bp
ATGCTCCACTTTTCTATAAATGCCTTCTGGTTTTGTACCTACAGTAAAAAAGATCCAGTTGTTTTTTGTTACTTCTGCAAGATAAATGCAAAAGCTCATCAAGTGATCCAACAATTGCAGGCTTTTTCCAAGGATAAATCTTCTTCATCCAAGCTAGAGAAGCTCGATGCTATGATGGTTGATGTTTCTAATCTCATTTCTGAACCATTTCCTAGCTTTGATTTTCATCAACCAGAGGCTAAGTCATCTGTTGGCCAGGACGAGTATGCATTGGCCAAGGAAGGACTCCAGAAGATCTTTGATCGGGGGTTAGAAGCTTTAGCTGATGACCAAGTGCAAAAAGAGTTTCTCACTTATACAGCCATGCTTTTATCAGTTGATTGGTGCTCATCGCAGTTGAAGGCTAACCTTTCATCATTCACAGAAAACCTCCCAGAGGAAACCTCCACTTTTGTTCAAGCTAAAAAAAAGTTGAAGGTGGTCTCTGACCTATCAGCTTCAGTTACCCACAAGAAGTTTATGCTCCGGCAACAGAGTTCCAAGTATACTGAGATGAAGAAAGAAAGTATTGCCTCTGAGGAGAAAATTGCCAACCTTAAGGCCTGGATTCAAAAGTTGGAAGCTTCTCTAGCCACAGAAAAGAGAAACAAGGCAAAGATTGATGAGGTTTTGGATTCCATCGAGACACAAGTAATCACTGCCAGAGATGGATTGGTCTCAGACTTGGCACAAGTGTCTGCCATGGAGGGAACAACCCAAGCTGCTAACCTAGTAGCTCAACAACAGTCAGCGTGGAATAGCTTAAGGACTACTTTTACCAAGTTTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-UBP

Protein Analysis

276

Amino Acids

31.03

Weight (kDa)

6.91

Isoelectric Point (pI)

39.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000538)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g04050 FvH4_2g04050 FvH4_2g04050 FvH4_2g04050 FvH4_2g04050
rosa_chinensis RchiOBHm_Chr6g0253231 RchiOBHm_Chr6g0253251 RchiOBHm_Chr6g0253261 RchiOBHm_Chr6g0253271 RchiOBHm_Chr6g0253291 RchiOBHm_Chr6g0253321 RchiOBHm_Chr6g0253331 RchiOBHm_Chr6g0253341 RchiOBHm_Chr6g0253371 RchiOBHm_Chr6g0253401
rosa_laevigata RLG00000015022 RLG00000015023 RLG00000015024 RLG00000015027 RLG00000015028 RLG00000015030 RLG00000015031 RLG00000015034 RLG00000015035 RLG00000015038 RLG00000015041
rosa_multiflora Rmu_sc0001257.1_g000004 Rmu_sc0001257.1_g000008 Rmu_sc0001257.1_g000014 Rmu_sc0001257.1_g000016 Rmu_sc0001257.1_g000019 Rmu_sc0001257.1_g000026 Rmu_sc0002560.1_g000013 Rmu_sc0002560.1_g000020 Rmu_sc0002560.1_g000021 Rmu_sc0003855.1_g000005 Rmu_sc0003855.1_g000011 Rmu_sc0003898.1_g000003 Rmu_sc0003898.1_g000005 Rmu_sc0003898.1_g000016 Rmu_sc0003898.1_g000017 Rmu_sc0005439.1_g000007 Rmu_sc0005439.1_g000014 Rmu_sc0005439.1_g000021
rosa_roxburghii Rroxscaffold_7G00211930 Rroxscaffold_7G00211940 Rroxscaffold_7G00211960 Rroxscaffold_7G00211980 Rroxscaffold_7G00211990 Rroxscaffold_7G00212000 Rroxscaffold_7G00212050 Rroxscaffold_7G00212060 Rroxscaffold_7G00212070 Rroxscaffold_7G00212080 Rroxscaffold_7G00212160
rosa_rugosa Rorug05G0542900 Rorug05G0542900 Rorug05G0543000 Rorug05G0543100 Rorug05G0543100 Rorug05G0543200 Rorug05G0543300 Rorug05G0543400 Rorug05G0543400 Rorug05G0543500 Rorug05G0543600 Rorug05G0543700
rosa_samantha Rh6CG050000 Rh6DG045200 Rh6DG045500 Rh6DG045600 Rh6DG045700 Rh6DG045800 Rh6DG046200 Rh6DG046300 Rh6DG046400 Rh6DG046500 Rh6DG046700 Rh6DG046800
rosa_wichuraiana Rw0G000070 Rw6G005230 Rw6G005240 Rw6G005280 Rw6G005290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 545
AclWI GGATC 2 cut(s) 47, 100
AcoI YGGCCR 2 cut(s) 253, 273
AcuI CTGAAG 1 cut(s) 483
AfaI GTAC 1 cut(s) 37
AfiI CCNNNNNNNGG 1 cut(s) 436
AflII CTTAAG 2 cut(s) 596, 802
AgsI TTSAA 4 cut(s) 400, 458, 475, 611
AjnI CCWGG 2 cut(s) 255, 602
Alw21I GWGCWC 1 cut(s) 389
Alw26I GTCTC 3 cut(s) 487, 677, 721
AlwI GGATC 2 cut(s) 47, 100
AoxI GGCC 3 cut(s) 253, 273, 600
ApeKI GCWGC 1 cut(s) 761
Asp700I GAANNNNTTC 1 cut(s) 207
BalI TGGCCA 2 cut(s) 255, 275
Bbv12I GWGCWC 1 cut(s) 389
BbvI GCAGC 1 cut(s) 748
BccI CCATC 3 cut(s) 169, 686, 701
BciT130I CCWGG 2 cut(s) 257, 604
BcoDI GTCTC 3 cut(s) 487, 677, 721
BfaI CTAG 4 cut(s) 155, 213, 629, 770
BfmI CTRYAG 1 cut(s) 40
BfrI CTTAAG 2 cut(s) 596, 802
BglII AGATCT 1 cut(s) 294
BisI GCNGC 1 cut(s) 762
BlsI GCNGC 1 cut(s) 763
Bme1390I CCNGG 2 cut(s) 257, 604
BmrFI CCNGG 2 cut(s) 257, 604
BmsI GCATC 1 cut(s) 157
BplI GAGNNNNNCTC 2 cut(s) 428, 460
BpmI CTGGAG 1 cut(s) 272
BsaBI GATNNNNATC 1 cut(s) 225
BsaI GGTCTC 2 cut(s) 487, 721
BsaJI CCNNGG 3 cut(s) 129, 276, 741
Bsc4I CCNNNNNNNGG 1 cut(s) 436
Bse1I ACTGG 1 cut(s) 56
Bse8I GATNNNNATC 1 cut(s) 225
BseBI CCWGG 2 cut(s) 257, 604
BseDI CCNNGG 3 cut(s) 129, 276, 741
BseGI GGATG 1 cut(s) 146
BseJI GATNNNNATC 1 cut(s) 225
BseLI CCNNNNNNNGG 1 cut(s) 436
BseMII CTCAG 3 cut(s) 540, 567, 732
BseNI ACTGG 1 cut(s) 56
BseRI GAGGAG 1 cut(s) 593
BseXI GCAGC 1 cut(s) 748
BshFI GGCC 3 cut(s) 255, 275, 602
BsiHKAI GWGCWC 1 cut(s) 389
BsiSI CCGG 1 cut(s) 526
BslI CCNNNNNNNGG 1 cut(s) 436
BsmAI GTCTC 3 cut(s) 487, 677, 721
BsnI GGCC 3 cut(s) 255, 275, 602
Bso31I GGTCTC 2 cut(s) 487, 721
Bsp1286I GDGCHC 1 cut(s) 389
Bsp143I GATC 4 cut(s) 52, 105, 294, 301
Bsp19I CCATGG 1 cut(s) 741
BspANI GGCC 3 cut(s) 255, 275, 602
BspCNI CTCAG 3 cut(s) 541, 568, 731
BspPI GGATC 2 cut(s) 47, 100
BspTI CTTAAG 2 cut(s) 596, 802
BspTNI GGTCTC 2 cut(s) 487, 721
BsrI ACTGG 1 cut(s) 56
BssECI CCNNGG 3 cut(s) 129, 276, 741
BssMI GATC 4 cut(s) 52, 105, 294, 301
BssNAI GTATAC 1 cut(s) 546
BssT1I CCWWGG 3 cut(s) 129, 276, 741
Bst1107I GTATAC 1 cut(s) 546
Bst2UI CCWGG 2 cut(s) 257, 604
Bst4CI ACNGT 2 cut(s) 44, 786
BstAFI CTTAAG 2 cut(s) 596, 802
BstC8I GCNNGC 1 cut(s) 120
BstDEI CTNAG 4 cut(s) 240, 549, 576, 718
BstDSI CCRYGG 1 cut(s) 741
BstENI CCTNNNNNAGG 1 cut(s) 434
BstF5I GGATG 1 cut(s) 146
BstKTI GATC 4 cut(s) 55, 108, 297, 304
BstMAI GTCTC 3 cut(s) 487, 677, 721
BstMBI GATC 4 cut(s) 52, 105, 294, 301
BstMWI GCNNNNNNNGC 2 cut(s) 160, 629
BstNI CCWGG 2 cut(s) 257, 604
BstSCI CCNGG 2 cut(s) 255, 602
BstSFI CTRYAG 1 cut(s) 40
BstV1I GCAGC 1 cut(s) 748
BstX2I RGATCY 2 cut(s) 52, 294
BstYI RGATCY 2 cut(s) 52, 294
BstZ17I GTATAC 1 cut(s) 546
BsuRI GGCC 3 cut(s) 255, 275, 602
BtgI CCRYGG 1 cut(s) 741
BtgZI GCGATG 1 cut(s) 375
BtsCI GGATG 1 cut(s) 146
BtsI GCAGTG 1 cut(s) 696
BtsIMutI CAGTG 1 cut(s) 696
Cac8I GCNNGC 1 cut(s) 120
Csp6I GTAC 1 cut(s) 36
CviAII CATG 3 cut(s) 364, 742, 828
CviQI GTAC 1 cut(s) 36
DdeI CTNAG 4 cut(s) 240, 549, 576, 718
DpnI GATC 4 cut(s) 54, 107, 296, 303
DpnII GATC 4 cut(s) 52, 105, 294, 301
EaeI YGGCCR 2 cut(s) 253, 273
Eco130I CCWWGG 3 cut(s) 129, 276, 741
Eco147I AGGCCT 1 cut(s) 602
Eco31I GGTCTC 2 cut(s) 487, 721
Eco57I CTGAAG 1 cut(s) 483
EcoNI CCTNNNNNAGG 1 cut(s) 434
EcoRII CCWGG 2 cut(s) 255, 602
EcoT14I CCWWGG 3 cut(s) 129, 276, 741
EcoT22I ATGCAT 1 cut(s) 271
ErhI CCWWGG 3 cut(s) 129, 276, 741
FaeI CATG 3 cut(s) 367, 745, 831
FaiI YATR 9 cut(s) 17, 173, 267, 357, 365, 521, 546, 743, 829
FalI AAGNNNNNCTT 2 cut(s) 796, 828
FatI CATG 3 cut(s) 363, 741, 827
FblI GTMKAC 1 cut(s) 545
Fnu4HI GCNGC 1 cut(s) 762
FokI GGATG 1 cut(s) 133
Fsp4HI GCNGC 1 cut(s) 762
FspBI CTAG 4 cut(s) 155, 213, 629, 770
GluI GCNGC 1 cut(s) 762
GsuI CTGGAG 1 cut(s) 272
HaeIII GGCC 3 cut(s) 255, 275, 602
HapII CCGG 1 cut(s) 526
Hin1II CATG 3 cut(s) 367, 745, 831
HindIII AAGCTT 2 cut(s) 315, 621
HinfI GANTC 3 cut(s) 285, 607, 674
HpaII CCGG 1 cut(s) 526
Hpy166II GTNNAC 1 cut(s) 546
Hpy188I TCNGA 4 cut(s) 202, 487, 577, 721
Hpy188III TCNNGA 2 cut(s) 289, 682
Hpy8I GTNNAC 1 cut(s) 546
HpyAV CCTTC 4 cut(s) 34, 275, 394, 469
HpyCH4III ACNGT 2 cut(s) 44, 786
HpyCH4V TGCA 6 cut(s) 78, 89, 118, 269, 337, 827
HpyF10VI GCNNNNNNNGC 2 cut(s) 160, 629
HpyF3I CTNAG 4 cut(s) 240, 549, 576, 718
Hsp92II CATG 3 cut(s) 367, 745, 831
Kzo9I GATC 4 cut(s) 52, 105, 294, 301
LmnI GCTCC 2 cut(s) 9, 528
Lsp1109I GCAGC 1 cut(s) 748
LweI GCATC 1 cut(s) 157
MaeI CTAG 4 cut(s) 155, 213, 629, 770
MaeIII GTNAC 2 cut(s) 68, 502
MalI GATC 4 cut(s) 54, 107, 296, 303
MboI GATC 4 cut(s) 52, 105, 294, 301
MboII GAAGA 4 cut(s) 132, 135, 304, 568
MfeI CAATTG 1 cut(s) 113
MflI RGATCY 2 cut(s) 52, 294
MhlI GDGCHC 1 cut(s) 389
MlsI TGGCCA 2 cut(s) 255, 275
MluCI AATT 2 cut(s) 113, 585
MluNI TGGCCA 2 cut(s) 255, 275
MlyI GAGTC 1 cut(s) 279
MmeI TCCRAC 2 cut(s) 133, 597
MnlI CCTC 8 cut(s) 229, 430, 440, 454, 571, 583, 658, 739
Mox20I TGGCCA 2 cut(s) 255, 275
Mph1103I ATGCAT 1 cut(s) 271
MroXI GAANNNNTTC 1 cut(s) 207
MscI TGGCCA 2 cut(s) 255, 275
MseI TTAA 2 cut(s) 597, 803
Msp20I TGGCCA 2 cut(s) 255, 275
MspCI CTTAAG 2 cut(s) 596, 802
MspI CCGG 1 cut(s) 526
MspR9I CCNGG 2 cut(s) 257, 604
MunI CAATTG 1 cut(s) 113
MvaI CCWGG 2 cut(s) 257, 604
MwoI GCNNNNNNNGC 2 cut(s) 160, 629
NcoI CCATGG 1 cut(s) 741
NdeII GATC 4 cut(s) 52, 105, 294, 301
NlaIII CATG 3 cut(s) 367, 745, 831
NsiI ATGCAT 1 cut(s) 271
PceI AGGCCT 1 cut(s) 602
PdmI GAANNNNTTC 1 cut(s) 207
PfeI GAWTC 2 cut(s) 607, 674
PkrI GCNGC 1 cut(s) 763
PleI GAGTC 1 cut(s) 279
PpsI GAGTC 1 cut(s) 279
Psp6I CCWGG 2 cut(s) 255, 602
PspGI CCWGG 2 cut(s) 255, 602
PsuI RGATCY 2 cut(s) 52, 294
RsaI GTAC 1 cut(s) 37
RsaNI GTAC 1 cut(s) 36
SaqAI TTAA 2 cut(s) 597, 803
SatI GCNGC 1 cut(s) 762
Sau3AI GATC 4 cut(s) 52, 105, 294, 301
SchI GAGTC 1 cut(s) 279
ScrFI CCNGG 2 cut(s) 257, 604
SduI GDGCHC 1 cut(s) 389
SfaNI GCATC 1 cut(s) 157
SfcI CTRYAG 1 cut(s) 40
SmlI CTYRAG 2 cut(s) 596, 802
SmoI CTYRAG 2 cut(s) 596, 802
Sse9I AATT 2 cut(s) 113, 585
SseBI AGGCCT 1 cut(s) 602
SspMI CTAG 4 cut(s) 155, 213, 629, 770
StuI AGGCCT 1 cut(s) 602
StyD4I CCNGG 2 cut(s) 255, 602
StyI CCWWGG 3 cut(s) 129, 276, 741
TaaI ACNGT 2 cut(s) 44, 786
TaqI TCGA 2 cut(s) 165, 681
TasI AATT 2 cut(s) 113, 585
TfiI GAWTC 2 cut(s) 607, 674
Tru1I TTAA 2 cut(s) 597, 803
Tru9I TTAA 2 cut(s) 597, 803
TscAI CASTG 1 cut(s) 703
TseI GCWGC 1 cut(s) 761
TspDTI ATGAA 4 cut(s) 135, 215, 402, 569
TspRI CASTG 1 cut(s) 703
Vha464I CTTAAG 2 cut(s) 596, 802
XagI CCTNNNNNAGG 1 cut(s) 434
XcmI CCANNNNNNNNNTGG 1 cut(s) 709
XmiI GTMKAC 1 cut(s) 545
XmnI GAANNNNTTC 1 cut(s) 207
XspI CTAG 4 cut(s) 155, 213, 629, 770
Zsp2I ATGCAT 1 cut(s) 271
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.