Rh6DG045800

histone deacetylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000538
Physical Location & Seq
Reverse (-)
4827527 .. 4827862
336 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG045800.1

Sequence Viewer

Length: 336 bp
ATGTTCATCCACAGTTGGATGCTCGATCAGTCGTTTGGAGGCCAGGATGAGCTTGCATTGGCTAAGGAGGGACTCCGGAAGATCTTTGATGGCGGGATAAAGGCTCTAGCTGATCCCAAAGTGCAAGAAGAGTTTCTCCTTTACTCAGCCACACTGCTATCAGCTGAGTCATGCCCCTCAGAATTGAAGGTTAACCTTTCATCATTCAGGTGCAATCTTTCCGAGGAAACGTCTGCTTTCGTCAAAGCTCAAGATGAGTTGAAGGTGGCCTCAGACTTATCAGCCTGCAATCACTCAGAAGAAGTTTGTGGTGCTGCAACAAACTTCAAAGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-UBP

Protein Analysis

111

Amino Acids

12.11

Weight (kDa)

4.7

Isoelectric Point (pI)

42.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000538)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g04050 FvH4_2g04050 FvH4_2g04050 FvH4_2g04050 FvH4_2g04050
rosa_chinensis RchiOBHm_Chr6g0253231 RchiOBHm_Chr6g0253251 RchiOBHm_Chr6g0253261 RchiOBHm_Chr6g0253271 RchiOBHm_Chr6g0253291 RchiOBHm_Chr6g0253321 RchiOBHm_Chr6g0253331 RchiOBHm_Chr6g0253341 RchiOBHm_Chr6g0253371 RchiOBHm_Chr6g0253401
rosa_laevigata RLG00000015022 RLG00000015023 RLG00000015024 RLG00000015027 RLG00000015028 RLG00000015030 RLG00000015031 RLG00000015034 RLG00000015035 RLG00000015038 RLG00000015041
rosa_multiflora Rmu_sc0001257.1_g000004 Rmu_sc0001257.1_g000008 Rmu_sc0001257.1_g000014 Rmu_sc0001257.1_g000016 Rmu_sc0001257.1_g000019 Rmu_sc0001257.1_g000026 Rmu_sc0002560.1_g000013 Rmu_sc0002560.1_g000020 Rmu_sc0002560.1_g000021 Rmu_sc0003855.1_g000005 Rmu_sc0003855.1_g000011 Rmu_sc0003898.1_g000003 Rmu_sc0003898.1_g000005 Rmu_sc0003898.1_g000016 Rmu_sc0003898.1_g000017 Rmu_sc0005439.1_g000007 Rmu_sc0005439.1_g000014 Rmu_sc0005439.1_g000021
rosa_roxburghii Rroxscaffold_7G00211930 Rroxscaffold_7G00211940 Rroxscaffold_7G00211960 Rroxscaffold_7G00211980 Rroxscaffold_7G00211990 Rroxscaffold_7G00212000 Rroxscaffold_7G00212050 Rroxscaffold_7G00212060 Rroxscaffold_7G00212070 Rroxscaffold_7G00212080 Rroxscaffold_7G00212160
rosa_rugosa Rorug05G0542900 Rorug05G0542900 Rorug05G0543000 Rorug05G0543100 Rorug05G0543100 Rorug05G0543200 Rorug05G0543300 Rorug05G0543400 Rorug05G0543400 Rorug05G0543500 Rorug05G0543600 Rorug05G0543700
rosa_samantha Rh6CG050000 Rh6DG045200 Rh6DG045500 Rh6DG045600 Rh6DG045700 Rh6DG045800 Rh6DG046200 Rh6DG046300 Rh6DG046400 Rh6DG046500 Rh6DG046700 Rh6DG046800
rosa_wichuraiana Rw0G000070 Rw6G005230 Rw6G005240 Rw6G005280 Rw6G005290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 75
AciI CCGC 1 cut(s) 93
AclWI GGATC 1 cut(s) 107
AgsI TTSAA 3 cut(s) 187, 262, 328
AjnI CCWGG 1 cut(s) 42
AluBI AGCT 4 cut(s) 52, 110, 164, 248
AluI AGCT 4 cut(s) 52, 110, 164, 248
AlwI GGATC 1 cut(s) 107
Aor13HI TCCGGA 1 cut(s) 75
AoxI GGCC 2 cut(s) 40, 267
ApeKI GCWGC 1 cut(s) 314
Asp700I GAANNNNTTC 1 cut(s) 132
BbvI GCAGC 1 cut(s) 301
BccI CCATC 1 cut(s) 83
BciT130I CCWGG 1 cut(s) 44
BfaI CTAG 1 cut(s) 107
BglII AGATCT 1 cut(s) 81
BisI GCNGC 1 cut(s) 315
BlsI GCNGC 1 cut(s) 316
Bme1390I CCNGG 1 cut(s) 44
BmrFI CCNGG 1 cut(s) 44
BmsI GCATC 1 cut(s) 9
Bpu10I CCTNAGC 1 cut(s) 63
BpuEI CTTGAG 1 cut(s) 234
BsaJI CCNNGG 1 cut(s) 222
BsaWI WCCGGW 1 cut(s) 75
BseAI TCCGGA 1 cut(s) 75
BseBI CCWGG 1 cut(s) 44
BseDI CCNNGG 1 cut(s) 222
BseGI GGATG 3 cut(s) 6, 24, 52
BseMII CTCAG 5 cut(s) 156, 159, 192, 285, 309
BseXI GCAGC 1 cut(s) 301
BshFI GGCC 2 cut(s) 42, 269
BsiSI CCGG 1 cut(s) 76
BslFI GGGAC 1 cut(s) 84
BsmFI GGGAC 1 cut(s) 84
BsnI GGCC 2 cut(s) 42, 269
Bsp13I TCCGGA 1 cut(s) 75
Bsp143I GATC 3 cut(s) 25, 81, 112
BspACI CCGC 1 cut(s) 93
BspANI GGCC 2 cut(s) 42, 269
BspCNI CTCAG 5 cut(s) 157, 158, 191, 284, 308
BspEI TCCGGA 1 cut(s) 75
BspPI GGATC 1 cut(s) 107
BssECI CCNNGG 1 cut(s) 222
BssMI GATC 3 cut(s) 25, 81, 112
Bst2UI CCWGG 1 cut(s) 44
Bst4CI ACNGT 1 cut(s) 14
Bst6I CTCTTC 1 cut(s) 123
BstC8I GCNNGC 2 cut(s) 54, 286
BstDEI CTNAG 6 cut(s) 63, 145, 165, 178, 271, 295
BstF5I GGATG 3 cut(s) 6, 24, 52
BstKTI GATC 3 cut(s) 28, 84, 115
BstMBI GATC 3 cut(s) 25, 81, 112
BstNI CCWGG 1 cut(s) 44
BstSCI CCNGG 1 cut(s) 42
BstV1I GCAGC 1 cut(s) 301
BstX2I RGATCY 1 cut(s) 81
BstYI RGATCY 1 cut(s) 81
BsuRI GGCC 2 cut(s) 42, 269
BtsCI GGATG 3 cut(s) 6, 24, 52
BtsI GCAGTG 1 cut(s) 152
BtsIMutI CAGTG 1 cut(s) 152
Cac8I GCNNGC 2 cut(s) 54, 286
CviAII CATG 1 cut(s) 171
DdeI CTNAG 6 cut(s) 63, 145, 165, 178, 271, 295
DpnI GATC 3 cut(s) 27, 83, 114
DpnII GATC 3 cut(s) 25, 81, 112
Eam1104I CTCTTC 1 cut(s) 123
EarI CTCTTC 1 cut(s) 123
EcoRII CCWGG 1 cut(s) 42
FaeI CATG 1 cut(s) 174
FaiI YATR 2 cut(s) 172, 334
FaqI GGGAC 1 cut(s) 84
FatI CATG 1 cut(s) 170
FauI CCCGC 1 cut(s) 86
Fnu4HI GCNGC 1 cut(s) 315
FokI GGATG 2 cut(s) 31, 59
Fsp4HI GCNGC 1 cut(s) 315
FspBI CTAG 1 cut(s) 107
GluI GCNGC 1 cut(s) 315
HaeIII GGCC 2 cut(s) 42, 269
HapII CCGG 1 cut(s) 76
Hin1II CATG 1 cut(s) 174
HincII GTYRAC 1 cut(s) 193
HindII GTYRAC 1 cut(s) 193
HinfI GANTC 2 cut(s) 72, 167
HpaI GTTAAC 1 cut(s) 193
HpaII CCGG 1 cut(s) 76
Hpy166II GTNNAC 1 cut(s) 193
Hpy188I TCNGA 4 cut(s) 181, 223, 274, 298
Hpy188III TCNNGA 2 cut(s) 76, 251
Hpy8I GTNNAC 1 cut(s) 193
HpyAV CCTTC 2 cut(s) 181, 256
HpyCH4III ACNGT 1 cut(s) 14
HpyCH4IV ACGT 1 cut(s) 230
HpyCH4V TGCA 5 cut(s) 56, 124, 213, 288, 317
HpyF3I CTNAG 6 cut(s) 63, 145, 165, 178, 271, 295
HpySE526I ACGT 1 cut(s) 230
Hsp92II CATG 1 cut(s) 174
Kpn2I TCCGGA 1 cut(s) 75
KspAI GTTAAC 1 cut(s) 193
Kzo9I GATC 3 cut(s) 25, 81, 112
LpnPI CCDG 5 cut(s) 29, 56, 89, 193, 298
Lsp1109I GCAGC 1 cut(s) 301
LweI GCATC 1 cut(s) 9
MaeI CTAG 1 cut(s) 107
MaeII ACGT 1 cut(s) 230
MalI GATC 3 cut(s) 27, 83, 114
MboI GATC 3 cut(s) 25, 81, 112
MboII GAAGA 3 cut(s) 91, 140, 311
MflI RGATCY 1 cut(s) 81
MluCI AATT 1 cut(s) 182
MlyI GAGTC 2 cut(s) 66, 176
MnlI CCTC 5 cut(s) 32, 61, 187, 217, 280
MroI TCCGGA 1 cut(s) 75
MroXI GAANNNNTTC 1 cut(s) 132
MseI TTAA 1 cut(s) 192
MslI CAYNNNNRTG 1 cut(s) 208
MspA1I CMGCKG 1 cut(s) 164
MspI CCGG 1 cut(s) 76
MspR9I CCNGG 1 cut(s) 44
MvaI CCWGG 1 cut(s) 44
NdeII GATC 3 cut(s) 25, 81, 112
NlaIII CATG 1 cut(s) 174
PdmI GAANNNNTTC 1 cut(s) 132
PkrI GCNGC 1 cut(s) 316
PleI GAGTC 2 cut(s) 66, 175
PpsI GAGTC 2 cut(s) 66, 175
Psp6I CCWGG 1 cut(s) 42
PspGI CCWGG 1 cut(s) 42
PsuI RGATCY 1 cut(s) 81
PvuII CAGCTG 1 cut(s) 164
RseI CAYNNNNRTG 1 cut(s) 208
SaqAI TTAA 1 cut(s) 192
SatI GCNGC 1 cut(s) 315
Sau3AI GATC 3 cut(s) 25, 81, 112
SchI GAGTC 2 cut(s) 66, 176
ScrFI CCNGG 1 cut(s) 44
SetI ASST 9 cut(s) 54, 112, 166, 192, 198, 212, 233, 250, 267
SfaNI GCATC 1 cut(s) 9
SmiMI CAYNNNNRTG 1 cut(s) 208
SmlI CTYRAG 1 cut(s) 249
SmoI CTYRAG 1 cut(s) 249
Sse9I AATT 1 cut(s) 182
SsiI CCGC 1 cut(s) 93
SspMI CTAG 1 cut(s) 107
StyD4I CCNGG 1 cut(s) 42
TaaI ACNGT 1 cut(s) 14
TaiI ACGT 1 cut(s) 233
TaqI TCGA 1 cut(s) 24
TasI AATT 1 cut(s) 182
Tru1I TTAA 1 cut(s) 192
Tru9I TTAA 1 cut(s) 192
TscAI CASTG 1 cut(s) 159
TseI GCWGC 1 cut(s) 314
TspDTI ATGAA 1 cut(s) 189
TspRI CASTG 1 cut(s) 159
XmnI GAANNNNTTC 1 cut(s) 132
XspI CTAG 1 cut(s) 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.