Rmu_sc0001257.1_g000014

histone deacetylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001257.1
OG0000538
Physical Location & Seq
Reverse (-)
35869 .. 36450
582 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001257.1_g000014.1.cds

Sequence Viewer

Length: 582 bp
atgcgcaccaagccatttgacggtcatgatgtatttgcattggccaaggaaggacttcagaaaatcattgatcaggggttagaagctttagctaatgaccaattgcaaagagagtttctcacttattcagccatacttctatcagctgattcctgcccatcggaattgaaggctgacctttcatcattcagaggtaatctcccagaggaaacctctgcttttattcaagctagaaatgagttgaaggtggcctcagacctagcagcttcaattactctaaagaagtttgtcctccagcaagagtcttccaagtattccgatgcaaggaaagaaattcttgcctcagaggagagaattgccaatcttaaggctactctagcaacagaagagagcaagaaggcaaagttcgatgagattttgggttcgatcgtgactcaagtaacctctgccaaagatggattggtctcggacttggcacaagtctccagcatggagggaacaatccaagctgctacccagttagtatctcagcgacagtcggtgtggaatagcttaaggacaacctttacgaagtttgcatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-UBP

Protein Analysis

193

Amino Acids

21.15

Weight (kDa)

5.35

Isoelectric Point (pI)

42.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000538)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g04050 FvH4_2g04050 FvH4_2g04050 FvH4_2g04050 FvH4_2g04050
rosa_chinensis RchiOBHm_Chr6g0253231 RchiOBHm_Chr6g0253251 RchiOBHm_Chr6g0253261 RchiOBHm_Chr6g0253271 RchiOBHm_Chr6g0253291 RchiOBHm_Chr6g0253321 RchiOBHm_Chr6g0253331 RchiOBHm_Chr6g0253341 RchiOBHm_Chr6g0253371 RchiOBHm_Chr6g0253401
rosa_laevigata RLG00000015022 RLG00000015023 RLG00000015024 RLG00000015027 RLG00000015028 RLG00000015030 RLG00000015031 RLG00000015034 RLG00000015035 RLG00000015038 RLG00000015041
rosa_multiflora Rmu_sc0001257.1_g000004 Rmu_sc0001257.1_g000008 Rmu_sc0001257.1_g000014 Rmu_sc0001257.1_g000016 Rmu_sc0001257.1_g000019 Rmu_sc0001257.1_g000026 Rmu_sc0002560.1_g000013 Rmu_sc0002560.1_g000020 Rmu_sc0002560.1_g000021 Rmu_sc0003855.1_g000005 Rmu_sc0003855.1_g000011 Rmu_sc0003898.1_g000003 Rmu_sc0003898.1_g000005 Rmu_sc0003898.1_g000016 Rmu_sc0003898.1_g000017 Rmu_sc0005439.1_g000007 Rmu_sc0005439.1_g000014 Rmu_sc0005439.1_g000021
rosa_roxburghii Rroxscaffold_7G00211930 Rroxscaffold_7G00211940 Rroxscaffold_7G00211960 Rroxscaffold_7G00211980 Rroxscaffold_7G00211990 Rroxscaffold_7G00212000 Rroxscaffold_7G00212050 Rroxscaffold_7G00212060 Rroxscaffold_7G00212070 Rroxscaffold_7G00212080 Rroxscaffold_7G00212160
rosa_rugosa Rorug05G0542900 Rorug05G0542900 Rorug05G0543000 Rorug05G0543100 Rorug05G0543100 Rorug05G0543200 Rorug05G0543300 Rorug05G0543400 Rorug05G0543400 Rorug05G0543500 Rorug05G0543600 Rorug05G0543700
rosa_samantha Rh6CG050000 Rh6DG045200 Rh6DG045500 Rh6DG045600 Rh6DG045700 Rh6DG045800 Rh6DG046200 Rh6DG046300 Rh6DG046400 Rh6DG046500 Rh6DG046700 Rh6DG046800
rosa_wichuraiana Rw0G000070 Rw6G005230 Rw6G005240 Rw6G005280 Rw6G005290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 5
AcoI YGGCCR 1 cut(s) 42
AcsI RAATTY 1 cut(s) 333
AcuI CTGAAG 1 cut(s) 41
AfiI CCNNNNNNNGG 2 cut(s) 20, 324
AflII CTTAAG 2 cut(s) 365, 553
AgsI TTSAA 4 cut(s) 169, 227, 244, 270
AluBI AGCT 7 cut(s) 86, 92, 146, 230, 266, 509, 552
AluI AGCT 7 cut(s) 86, 92, 146, 230, 266, 509, 552
Alw26I GTCTC 2 cut(s) 469, 487
AoxI GGCC 2 cut(s) 42, 249
ApeKI GCWGC 2 cut(s) 263, 509
ApoI RAATTY 1 cut(s) 333
Asp700I GAANNNNTTC 1 cut(s) 54
AspLEI GCGC 1 cut(s) 6
BalI TGGCCA 1 cut(s) 44
BbsI GAAGAC 1 cut(s) 297
BbvI GCAGC 2 cut(s) 275, 496
BccI CCATC 2 cut(s) 166, 449
BclI TGATCA 1 cut(s) 70
BcoDI GTCTC 2 cut(s) 469, 487
BfaI CTAG 3 cut(s) 231, 260, 377
BfrI CTTAAG 2 cut(s) 365, 553
BisI GCNGC 2 cut(s) 264, 510
BlsI GCNGC 2 cut(s) 265, 511
BmrI ACTGGG 1 cut(s) 511
BmsI GCATC 1 cut(s) 310
BmuI ACTGGG 1 cut(s) 511
BpiI GAAGAC 1 cut(s) 297
BplI GAGNNNNNCTC 6 cut(s) 102, 134, 183, 215, 197, 229
BpmI CTGGAG 2 cut(s) 278, 469
BpuEI CTTGAG 1 cut(s) 420
BsaI GGTCTC 1 cut(s) 469
BsaJI CCNNGG 1 cut(s) 45
Bsc4I CCNNNNNNNGG 2 cut(s) 20, 324
Bse1I ACTGG 1 cut(s) 517
BseDI CCNNGG 1 cut(s) 45
BseLI CCNNNNNNNGG 2 cut(s) 20, 324
BseMII CTCAG 3 cut(s) 267, 357, 542
BseNI ACTGG 1 cut(s) 517
BseRI GAGGAG 1 cut(s) 362
BseXI GCAGC 2 cut(s) 275, 496
Bsh1285I CGRYCG 1 cut(s) 429
BshFI GGCC 2 cut(s) 44, 251
BsiEI CGRYCG 1 cut(s) 429
BslI CCNNNNNNNGG 2 cut(s) 20, 324
BsmAI GTCTC 2 cut(s) 469, 487
BsnI GGCC 2 cut(s) 44, 251
Bso31I GGTCTC 1 cut(s) 469
Bsp143I GATC 2 cut(s) 70, 426
BspANI GGCC 2 cut(s) 44, 251
BspCNI CTCAG 3 cut(s) 266, 356, 541
BspHI TCATGA 1 cut(s) 25
BspTI CTTAAG 2 cut(s) 365, 553
BspTNI GGTCTC 1 cut(s) 469
BsrI ACTGG 1 cut(s) 517
BssECI CCNNGG 1 cut(s) 45
BssMI GATC 2 cut(s) 70, 426
BssT1I CCWWGG 1 cut(s) 45
Bst4CI ACNGT 2 cut(s) 23, 537
Bst6I CTCTTC 1 cut(s) 381
BstAFI CTTAAG 2 cut(s) 365, 553
BstDEI CTNAG 3 cut(s) 253, 343, 528
BstHHI GCGC 1 cut(s) 6
BstKTI GATC 2 cut(s) 73, 429
BstMAI GTCTC 2 cut(s) 469, 487
BstMBI GATC 2 cut(s) 70, 426
BstMCI CGRYCG 1 cut(s) 429
BstMWI GCNNNNNNNGC 2 cut(s) 10, 377
BstV1I GCAGC 2 cut(s) 275, 496
BstV2I GAAGAC 1 cut(s) 297
BsuRI GGCC 2 cut(s) 44, 251
CciI TCATGA 1 cut(s) 25
CfoI GCGC 1 cut(s) 6
CviAII CATG 3 cut(s) 26, 490, 579
DdeI CTNAG 3 cut(s) 253, 343, 528
DpnI GATC 2 cut(s) 72, 428
DpnII GATC 2 cut(s) 70, 426
EaeI YGGCCR 1 cut(s) 42
Eam1104I CTCTTC 1 cut(s) 381
EarI CTCTTC 1 cut(s) 381
Eco130I CCWWGG 1 cut(s) 45
Eco31I GGTCTC 1 cut(s) 469
Eco57I CTGAAG 1 cut(s) 41
EcoT14I CCWWGG 1 cut(s) 45
ErhI CCWWGG 1 cut(s) 45
FaeI CATG 3 cut(s) 29, 493, 582
FaiI YATR 4 cut(s) 27, 134, 491, 580
FalI AAGNNNNNCTT 2 cut(s) 321, 353
FatI CATG 3 cut(s) 25, 489, 578
FbaI TGATCA 1 cut(s) 70
Fnu4HI GCNGC 2 cut(s) 264, 510
Fsp4HI GCNGC 2 cut(s) 264, 510
FspAI RTGCGCAY 1 cut(s) 5
FspBI CTAG 3 cut(s) 231, 260, 377
FspI TGCGCA 1 cut(s) 5
GlaI GCGC 1 cut(s) 5
GluI GCNGC 2 cut(s) 264, 510
GsuI CTGGAG 2 cut(s) 278, 469
HaeIII GGCC 2 cut(s) 44, 251
HhaI GCGC 1 cut(s) 6
Hin1II CATG 3 cut(s) 29, 493, 582
Hin6I GCGC 1 cut(s) 4
HinP1I GCGC 1 cut(s) 4
HindIII AAGCTT 1 cut(s) 84
HinfI GANTC 3 cut(s) 149, 302, 433
Hpy188I TCNGA 7 cut(s) 60, 163, 191, 256, 319, 346, 469
Hpy188III TCNNGA 2 cut(s) 26, 430
HpyAV CCTTC 4 cut(s) 44, 163, 238, 391
HpyCH4III ACNGT 2 cut(s) 23, 537
HpyCH4V TGCA 4 cut(s) 38, 106, 323, 578
HpyF10VI GCNNNNNNNGC 2 cut(s) 10, 377
HpyF3I CTNAG 3 cut(s) 253, 343, 528
Hsp92II CATG 3 cut(s) 29, 493, 582
HspAI GCGC 1 cut(s) 4
Ksp22I TGATCA 1 cut(s) 70
Kzo9I GATC 2 cut(s) 70, 426
LpnPI CCDG 6 cut(s) 59, 166, 216, 308, 499, 530
Lsp1109I GCAGC 2 cut(s) 275, 496
LweI GCATC 1 cut(s) 310
MaeI CTAG 3 cut(s) 231, 260, 377
MaeIII GTNAC 2 cut(s) 430, 439
MalI GATC 2 cut(s) 72, 428
MboI GATC 2 cut(s) 70, 426
MboII GAAGA 2 cut(s) 297, 398
MfeI CAATTG 1 cut(s) 101
MlsI TGGCCA 1 cut(s) 44
MluCI AATT 5 cut(s) 101, 164, 270, 333, 354
MluNI TGGCCA 1 cut(s) 44
MlyI GAGTC 2 cut(s) 311, 427
MnlI CCTC 9 cut(s) 185, 199, 223, 262, 302, 340, 352, 454, 487
Mox20I TGGCCA 1 cut(s) 44
MroXI GAANNNNTTC 1 cut(s) 54
MscI TGGCCA 1 cut(s) 44
MseI TTAA 2 cut(s) 366, 554
Msp20I TGGCCA 1 cut(s) 44
MspA1I CMGCKG 1 cut(s) 146
MspCI CTTAAG 2 cut(s) 365, 553
MunI CAATTG 1 cut(s) 101
MwoI GCNNNNNNNGC 2 cut(s) 10, 377
NdeII GATC 2 cut(s) 70, 426
NlaIII CATG 3 cut(s) 29, 493, 582
NmuCI GTSAC 1 cut(s) 430
NsbI TGCGCA 1 cut(s) 5
PagI TCATGA 1 cut(s) 25
PdmI GAANNNNTTC 1 cut(s) 54
PfeI GAWTC 1 cut(s) 149
PkrI GCNGC 2 cut(s) 265, 511
Ple19I CGATCG 1 cut(s) 429
PleI GAGTC 2 cut(s) 310, 427
PpsI GAGTC 2 cut(s) 310, 427
PvuI CGATCG 1 cut(s) 429
PvuII CAGCTG 1 cut(s) 146
SaqAI TTAA 2 cut(s) 366, 554
SatI GCNGC 2 cut(s) 264, 510
Sau3AI GATC 2 cut(s) 70, 426
SchI GAGTC 2 cut(s) 311, 427
SfaNI GCATC 1 cut(s) 310
SmlI CTYRAG 3 cut(s) 365, 435, 553
SmoI CTYRAG 3 cut(s) 365, 435, 553
Sse9I AATT 5 cut(s) 101, 164, 270, 333, 354
SspMI CTAG 3 cut(s) 231, 260, 377
StyI CCWWGG 1 cut(s) 45
TaaI ACNGT 2 cut(s) 23, 537
TaqI TCGA 2 cut(s) 408, 425
TasI AATT 5 cut(s) 101, 164, 270, 333, 354
TfiI GAWTC 1 cut(s) 149
Tru1I TTAA 2 cut(s) 366, 554
Tru9I TTAA 2 cut(s) 366, 554
TseFI GTSAC 1 cut(s) 430
TseI GCWGC 2 cut(s) 263, 509
Tsp45I GTSAC 1 cut(s) 430
TspDTI ATGAA 1 cut(s) 171
Vha464I CTTAAG 2 cut(s) 365, 553
XapI RAATTY 1 cut(s) 333
XcmI CCANNNNNNNNNTGG 1 cut(s) 457
XmnI GAANNNNTTC 1 cut(s) 54
XspI CTAG 3 cut(s) 231, 260, 377
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.