Rroxscaffold_7G00211940

histone deacetylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000538
Physical Location & Seq
Forward (+)
62346347 .. 62358596
12250 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00211940.1

Sequence Viewer

Length: 699 bp
ATGGCCGCCGAAGAGGGAGAAAGAACGAGGAGATGGCCGGCGTTTCTCGCTGGTTTCGGACCGACCCGAAGAGAATTTGGCTGTGGGTGCACCGAGCAATTGATTGCTGTCGGGGAGGTGGATGATGGGTGTAGCGTGGTCACCGGAGGCTTCGTTGTGCTTCGAGTTACGATTATTGACAAGCATGAATATAAGAAGACACAGCTTGCAAACAAAGGACGTCTTCGTGGCGATAACTATCATGATCGTGAGCATTATCGGCGACAAAGCATTGTCTTTGTGTCAACTGCAGTGACTCAATATGAATATGTCTTCTGTTTTGTTCATCTTTTGAGACAGAACCAAATTAATTTGGTGTTTCTCCTGCCCGGCTTTCTAGATGCTCAAGTGATCCAACAATTGTGGGCCAAGCAAGCAGATGCCAGCACCCCAATGGGAATTGGTCATGTTTATACTTGTAAGGAAACTCTCTGCAGTGGATGGAACAGGCACATCGGTGAGCATTATGAACAGACGGATCATTGTCTTGCTATCTACGCGCTAGAGAAGCTTGATGCCGTGATGGTTGGTGTTGCTGATCTCATCTCAAAGCCATTTCCTGGCTTCAATAGTAATCCAATGGATGCCAAGCCATTGGTTGGCCGTAATGAGTTTGAATTGGCCAAGGAAGGACTTCGAATATCTTTGATTGGGGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-UBP

Protein Analysis

232

Amino Acids

26.04

Weight (kDa)

6.45

Isoelectric Point (pI)

37.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000538)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g04050 FvH4_2g04050 FvH4_2g04050 FvH4_2g04050 FvH4_2g04050
rosa_chinensis RchiOBHm_Chr6g0253231 RchiOBHm_Chr6g0253251 RchiOBHm_Chr6g0253261 RchiOBHm_Chr6g0253271 RchiOBHm_Chr6g0253291 RchiOBHm_Chr6g0253321 RchiOBHm_Chr6g0253331 RchiOBHm_Chr6g0253341 RchiOBHm_Chr6g0253371 RchiOBHm_Chr6g0253401
rosa_laevigata RLG00000015022 RLG00000015023 RLG00000015024 RLG00000015027 RLG00000015028 RLG00000015030 RLG00000015031 RLG00000015034 RLG00000015035 RLG00000015038 RLG00000015041
rosa_multiflora Rmu_sc0001257.1_g000004 Rmu_sc0001257.1_g000008 Rmu_sc0001257.1_g000014 Rmu_sc0001257.1_g000016 Rmu_sc0001257.1_g000019 Rmu_sc0001257.1_g000026 Rmu_sc0002560.1_g000013 Rmu_sc0002560.1_g000020 Rmu_sc0002560.1_g000021 Rmu_sc0003855.1_g000005 Rmu_sc0003855.1_g000011 Rmu_sc0003898.1_g000003 Rmu_sc0003898.1_g000005 Rmu_sc0003898.1_g000016 Rmu_sc0003898.1_g000017 Rmu_sc0005439.1_g000007 Rmu_sc0005439.1_g000014 Rmu_sc0005439.1_g000021
rosa_roxburghii Rroxscaffold_7G00211930 Rroxscaffold_7G00211940 Rroxscaffold_7G00211960 Rroxscaffold_7G00211980 Rroxscaffold_7G00211990 Rroxscaffold_7G00212000 Rroxscaffold_7G00212050 Rroxscaffold_7G00212060 Rroxscaffold_7G00212070 Rroxscaffold_7G00212080 Rroxscaffold_7G00212160
rosa_rugosa Rorug05G0542900 Rorug05G0542900 Rorug05G0543000 Rorug05G0543100 Rorug05G0543100 Rorug05G0543200 Rorug05G0543300 Rorug05G0543400 Rorug05G0543400 Rorug05G0543500 Rorug05G0543600 Rorug05G0543700
rosa_samantha Rh6CG050000 Rh6DG045200 Rh6DG045500 Rh6DG045600 Rh6DG045700 Rh6DG045800 Rh6DG046200 Rh6DG046300 Rh6DG046400 Rh6DG046500 Rh6DG046700 Rh6DG046800
rosa_wichuraiana Rw0G000070 Rw6G005230 Rw6G005240 Rw6G005280 Rw6G005290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 223
AccB7I CCANNNNNTGG 2 cut(s) 599, 638
AccII CGCG 1 cut(s) 539
AciI CCGC 1 cut(s) 6
AclWI GGATC 2 cut(s) 385, 525
AcoI YGGCCR 4 cut(s) 3, 35, 640, 660
AcsI RAATTY 1 cut(s) 74
AcyI GRCGYC 1 cut(s) 220
AfiI CCNNNNNNNGG 2 cut(s) 599, 638
AgsI TTSAA 2 cut(s) 607, 656
AjnI CCWGG 1 cut(s) 598
AleI CACNNNNGTG 1 cut(s) 495
AluBI AGCT 2 cut(s) 205, 550
AluI AGCT 2 cut(s) 205, 550
Alw21I GWGCWC 1 cut(s) 92
Alw26I GTCTC 1 cut(s) 328
Alw44I GTGCAC 1 cut(s) 88
AlwI GGATC 2 cut(s) 385, 525
AoxI GGCC 5 cut(s) 3, 35, 405, 640, 660
ApaLI GTGCAC 1 cut(s) 88
ApoI RAATTY 1 cut(s) 74
AseI ATTAAT 1 cut(s) 348
Asp700I GAANNNNTTC 1 cut(s) 672
AspLEI GCGC 1 cut(s) 541
AspS9I GGNCC 2 cut(s) 59, 405
AsuC2I CCSGG 1 cut(s) 369
AsuHPI GGTGA 2 cut(s) 133, 509
AsuII TTCGAA 1 cut(s) 676
AvaII GGWCC 1 cut(s) 59
BaeGI GKGCMC 1 cut(s) 92
BalI TGGCCA 1 cut(s) 662
BbsI GAAGAC 3 cut(s) 203, 215, 304
Bbv12I GWGCWC 1 cut(s) 92
BccI CCATC 4 cut(s) 27, 119, 474, 556
BceAI ACGGC 2 cut(s) 542, 627
BciT130I CCWGG 1 cut(s) 600
BcnI CCSGG 1 cut(s) 369
BcoDI GTCTC 1 cut(s) 328
BfaI CTAG 2 cut(s) 377, 542
BfmI CTRYAG 2 cut(s) 288, 472
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
Bme1390I CCNGG 2 cut(s) 369, 600
Bme18I GGWCC 1 cut(s) 59
BmgT120I GGNCC 2 cut(s) 59, 405
BmrFI CCNGG 2 cut(s) 369, 600
BmsI GCATC 4 cut(s) 370, 409, 544, 613
BpiI GAAGAC 3 cut(s) 203, 215, 304
Bpu14I TTCGAA 1 cut(s) 676
BpuEI CTTGAG 1 cut(s) 369
BpuMI CCSGG 1 cut(s) 369
BsaBI GATNNNNATC 1 cut(s) 237
BsaHI GRCGYC 1 cut(s) 220
BsaJI CCNNGG 1 cut(s) 663
BsaWI WCCGGW 1 cut(s) 143
BsaXI ACNNNNNCTCC 2 cut(s) 138, 168
Bsc4I CCNNNNNNNGG 2 cut(s) 599, 638
Bse118I RCCGGY 1 cut(s) 37
Bse8I GATNNNNATC 1 cut(s) 237
BseBI CCWGG 1 cut(s) 600
BseDI CCNNGG 1 cut(s) 663
BseGI GGATG 3 cut(s) 127, 485, 628
BseJI GATNNNNATC 1 cut(s) 237
BseLI CCNNNNNNNGG 2 cut(s) 599, 638
BseRI GAGGAG 1 cut(s) 43
BseSI GKGCMC 1 cut(s) 92
Bsh1236I CGCG 1 cut(s) 539
BshFI GGCC 5 cut(s) 5, 37, 407, 642, 662
BsiHKAI GWGCWC 1 cut(s) 92
BsiSI CCGG 3 cut(s) 38, 144, 369
BslI CCNNNNNNNGG 2 cut(s) 599, 638
BsmAI GTCTC 1 cut(s) 328
BsnI GGCC 5 cut(s) 5, 37, 407, 642, 662
Bsp119I TTCGAA 1 cut(s) 676
Bsp1286I GDGCHC 1 cut(s) 92
Bsp143I GATC 4 cut(s) 244, 390, 517, 577
BspACI CCGC 1 cut(s) 6
BspANI GGCC 5 cut(s) 5, 37, 407, 642, 662
BspFNI CGCG 1 cut(s) 539
BspHI TCATGA 1 cut(s) 241
BspMAI CTGCAG 2 cut(s) 292, 476
BspPI GGATC 2 cut(s) 385, 525
BspT104I TTCGAA 1 cut(s) 676
BsrFI RCCGGY 1 cut(s) 37
BssAI RCCGGY 1 cut(s) 37
BssECI CCNNGG 1 cut(s) 663
BssMI GATC 4 cut(s) 244, 390, 517, 577
BssNI GRCGYC 1 cut(s) 220
BssT1I CCWWGG 1 cut(s) 663
Bst2UI CCWGG 1 cut(s) 600
Bst6I CTCTTC 2 cut(s) 6, 64
BstACI GRCGYC 1 cut(s) 220
BstBI TTCGAA 1 cut(s) 676
BstC8I GCNNGC 4 cut(s) 39, 207, 414, 424
BstEII GGTNACC 1 cut(s) 139
BstF5I GGATG 3 cut(s) 127, 485, 628
BstFNI CGCG 1 cut(s) 539
BstHHI GCGC 1 cut(s) 541
BstKTI GATC 4 cut(s) 247, 393, 520, 580
BstMAI GTCTC 1 cut(s) 328
BstMBI GATC 4 cut(s) 244, 390, 517, 577
BstMWI GCNNNNNNNGC 6 cut(s) 47, 87, 259, 413, 536, 547
BstNI CCWGG 1 cut(s) 600
BstPI GGTNACC 1 cut(s) 139
BstSCI CCNGG 2 cut(s) 367, 598
BstSFI CTRYAG 2 cut(s) 288, 472
BstSLI GKGCMC 1 cut(s) 92
BstUI CGCG 1 cut(s) 539
BstV2I GAAGAC 3 cut(s) 203, 215, 304
BstXI CCANNNNNNTGG 1 cut(s) 634
BsuRI GGCC 5 cut(s) 5, 37, 407, 642, 662
BtsCI GGATG 3 cut(s) 127, 485, 628
BtsI GCAGTG 2 cut(s) 297, 481
BtsIMutI CAGTG 2 cut(s) 297, 481
Cac8I GCNNGC 4 cut(s) 39, 207, 414, 424
CciI TCATGA 1 cut(s) 241
CfoI GCGC 1 cut(s) 541
Cfr10I RCCGGY 1 cut(s) 37
Cfr13I GGNCC 2 cut(s) 59, 405
CpoI CGGWCCG 1 cut(s) 59
CspCI CAANNNNNGTGG 2 cut(s) 383, 418
CspI CGGWCCG 1 cut(s) 59
CviAII CATG 3 cut(s) 185, 242, 446
DpnI GATC 4 cut(s) 246, 392, 519, 579
DpnII GATC 4 cut(s) 244, 390, 517, 577
EaeI YGGCCR 4 cut(s) 3, 35, 640, 660
Eam1104I CTCTTC 2 cut(s) 6, 64
EarI CTCTTC 2 cut(s) 6, 64
Eco130I CCWWGG 1 cut(s) 663
Eco47I GGWCC 1 cut(s) 59
Eco91I GGTNACC 1 cut(s) 139
EcoO65I GGTNACC 1 cut(s) 139
EcoRII CCWGG 1 cut(s) 598
EcoT14I CCWWGG 1 cut(s) 663
ErhI CCWWGG 1 cut(s) 663
FaeI CATG 3 cut(s) 188, 245, 449
FaiI YATR 8 cut(s) 186, 192, 243, 303, 309, 447, 453, 507
FalI AAGNNNNNCTT 2 cut(s) 207, 239
FatI CATG 3 cut(s) 184, 241, 445
Fnu4HI GCNGC 1 cut(s) 6
FokI GGATG 3 cut(s) 134, 492, 635
Fsp4HI GCNGC 1 cut(s) 6
FspBI CTAG 2 cut(s) 377, 542
GlaI GCGC 1 cut(s) 540
GluI GCNGC 1 cut(s) 6
HaeIII GGCC 5 cut(s) 5, 37, 407, 642, 662
HapII CCGG 3 cut(s) 38, 144, 369
HhaI GCGC 1 cut(s) 541
Hin1I GRCGYC 1 cut(s) 220
Hin1II CATG 3 cut(s) 188, 245, 449
Hin6I GCGC 1 cut(s) 539
HinP1I GCGC 1 cut(s) 539
HincII GTYRAC 1 cut(s) 285
HindII GTYRAC 1 cut(s) 285
HindIII AAGCTT 1 cut(s) 548
HinfI GANTC 1 cut(s) 295
HpaII CCGG 3 cut(s) 38, 144, 369
HphI GGTGA 2 cut(s) 133, 509
Hpy166II GTNNAC 2 cut(s) 90, 285
Hpy188I TCNGA 1 cut(s) 59
Hpy188III TCNNGA 3 cut(s) 242, 248, 377
Hpy8I GTNNAC 2 cut(s) 90, 285
HpyAV CCTTC 1 cut(s) 662
HpyCH4IV ACGT 1 cut(s) 220
HpyCH4V TGCA 4 cut(s) 90, 209, 290, 474
HpyF10VI GCNNNNNNNGC 6 cut(s) 47, 87, 259, 413, 536, 547
HpySE526I ACGT 1 cut(s) 220
Hsp92I GRCGYC 1 cut(s) 220
Hsp92II CATG 3 cut(s) 188, 245, 449
HspAI GCGC 1 cut(s) 539
KroI GCCGGC 1 cut(s) 37
KroNI GCCGGC 1 cut(s) 39
Kzo9I GATC 4 cut(s) 244, 390, 517, 577
LpnPI CCDG 9 cut(s) 36, 51, 157, 377, 382, 436, 472, 585, 612
LweI GCATC 4 cut(s) 370, 409, 544, 613
MaeI CTAG 2 cut(s) 377, 542
MaeII ACGT 1 cut(s) 220
MaeIII GTNAC 3 cut(s) 139, 166, 292
MalI GATC 4 cut(s) 246, 392, 519, 579
MboI GATC 4 cut(s) 244, 390, 517, 577
MboII GAAGA 5 cut(s) 23, 81, 208, 215, 304
MfeI CAATTG 2 cut(s) 98, 398
MhlI GDGCHC 1 cut(s) 92
MlsI TGGCCA 1 cut(s) 662
MluCI AATT 7 cut(s) 74, 98, 345, 349, 398, 438, 656
MluNI TGGCCA 1 cut(s) 662
MlyI GAGTC 1 cut(s) 289
MmeI TCCRAC 1 cut(s) 418
MnlI CCTC 4 cut(s) 7, 21, 109, 140
Mox20I TGGCCA 1 cut(s) 662
MroNI GCCGGC 1 cut(s) 37
MroXI GAANNNNTTC 1 cut(s) 672
MscI TGGCCA 1 cut(s) 662
MseI TTAA 1 cut(s) 348
MslI CAYNNNNRTG 3 cut(s) 246, 431, 495
Msp20I TGGCCA 1 cut(s) 662
MspI CCGG 3 cut(s) 38, 144, 369
MspR9I CCNGG 2 cut(s) 369, 600
MunI CAATTG 2 cut(s) 98, 398
MvaI CCWGG 1 cut(s) 600
MvnI CGCG 1 cut(s) 539
MwoI GCNNNNNNNGC 6 cut(s) 47, 87, 259, 413, 536, 547
NaeI GCCGGC 1 cut(s) 39
NciI CCSGG 1 cut(s) 369
NdeII GATC 4 cut(s) 244, 390, 517, 577
NgoMIV GCCGGC 1 cut(s) 37
NlaIII CATG 3 cut(s) 188, 245, 449
NmuCI GTSAC 2 cut(s) 139, 292
NspV TTCGAA 1 cut(s) 676
OliI CACNNNNGTG 1 cut(s) 495
PagI TCATGA 1 cut(s) 241
PdiI GCCGGC 1 cut(s) 39
PdmI GAANNNNTTC 1 cut(s) 672
PflMI CCANNNNNTGG 2 cut(s) 599, 638
PkrI GCNGC 1 cut(s) 7
PleI GAGTC 1 cut(s) 289
PpsI GAGTC 1 cut(s) 289
PshBI ATTAAT 1 cut(s) 348
Psp6I CCWGG 1 cut(s) 598
PspEI GGTNACC 1 cut(s) 139
PspGI CCWGG 1 cut(s) 598
PspPI GGNCC 2 cut(s) 59, 405
PstI CTGCAG 2 cut(s) 292, 476
RseI CAYNNNNRTG 3 cut(s) 246, 431, 495
Rsr2I CGGWCCG 1 cut(s) 59
RsrII CGGWCCG 1 cut(s) 59
SaqAI TTAA 1 cut(s) 348
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 4 cut(s) 244, 390, 517, 577
Sau96I GGNCC 2 cut(s) 59, 405
SchI GAGTC 1 cut(s) 289
ScrFI CCNGG 2 cut(s) 369, 600
SduI GDGCHC 1 cut(s) 92
SetI ASST 4 cut(s) 120, 207, 223, 552
SfaNI GCATC 4 cut(s) 370, 409, 544, 613
SfcI CTRYAG 2 cut(s) 288, 472
SfuI TTCGAA 1 cut(s) 676
SinI GGWCC 1 cut(s) 59
SmiMI CAYNNNNRTG 3 cut(s) 246, 431, 495
SmlI CTYRAG 1 cut(s) 384
SmoI CTYRAG 1 cut(s) 384
Sse9I AATT 7 cut(s) 74, 98, 345, 349, 398, 438, 656
SsiI CCGC 1 cut(s) 6
SspMI CTAG 2 cut(s) 377, 542
StyD4I CCNGG 2 cut(s) 367, 598
StyI CCWWGG 1 cut(s) 663
TaiI ACGT 1 cut(s) 223
TaqI TCGA 2 cut(s) 163, 676
TaqII GACCGA 1 cut(s) 76
TasI AATT 7 cut(s) 74, 98, 345, 349, 398, 438, 656
TauI GCSGC 1 cut(s) 8
Tru1I TTAA 1 cut(s) 348
Tru9I TTAA 1 cut(s) 348
TscAI CASTG 2 cut(s) 297, 481
TseFI GTSAC 2 cut(s) 139, 292
Tsp45I GTSAC 2 cut(s) 139, 292
TspDTI ATGAA 4 cut(s) 201, 314, 318, 522
TspGWI ACGGA 1 cut(s) 530
TspRI CASTG 2 cut(s) 297, 481
Van91I CCANNNNNTGG 2 cut(s) 599, 638
VneI GTGCAC 1 cut(s) 88
VpaK11BI GGWCC 1 cut(s) 59
VspI ATTAAT 1 cut(s) 348
XapI RAATTY 1 cut(s) 74
XbaI TCTAGA 1 cut(s) 376
XcmI CCANNNNNNNNNTGG 1 cut(s) 430
XmnI GAANNNNTTC 1 cut(s) 672
XspI CTAG 2 cut(s) 377, 542
ZraI GACGTC 1 cut(s) 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.