MD13G1218100.v1.1

Belongs to the eIF-2B alpha beta delta subunits family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0000605
Physical Location & Seq
Forward (+)
20952925 .. 20953269
345 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1218100.v1.1.491

Sequence Viewer

Length: 234 bp
ATGGCGGACGTCCAAGGTCTCGTGAATGAGCTTGCTACCAGTCTCCGGAAGCGGAAAGTCGAGGGTTCACGGGAGACTGCTCGGCTAACGGCAGAATTGCTTCGGACAGTTATATCGGCACAGAAGTTGCCATCACCTACAAACCAGGCAGCTGCTCTTATTGCGGCGGTAAGAGGCGTTGGCCAGCGGCTTATTGCTGCTAATCCTGTTGGTATGTCCTTTATTTTGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 map03013
Pfam Domains
Protein Families
IF-2B

Protein Analysis

78

Amino Acids

8.19

Weight (kDa)

11.29

Isoelectric Point (pI)

34.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000605)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07300 AT3G07300 AT3G07300
fragaria_vesca FvH4_1g26370 FvH4_4g04150 FvH4_7g02780 FvH4_7g02780 FvH4_7g02780 FvH4_7g02780
malus_domestica MD02G1290200.v1.1 MD07G1036800.v1.1 MD13G1218100.v1.1 MD13G1218200.v1.1
prunus_persica Prupe.1G044800_v2.0.a1 Prupe.2G032300_v2.0.a1 Prupe.2G032300_v2.0.a1 Prupe.2G032300_v2.0.a1
pyrus_communis pycom07g02550
rosa_chinensis RchiOBHm_Chr1g0313651 RchiOBHm_Chr1g0322021 RchiOBHm_Chr1g0322871 RchiOBHm_Chr1g0322881 RchiOBHm_Chr1g0378031 RchiOBHm_Chr2g0146721 RchiOBHm_Chr4g0394571 RchiOBHm_Chr4g0444661
rosa_laevigata RLG00000009689 RLG00000014710 RLG00000020215 RLG00000028674 RLG00000030393
rosa_multiflora Rmu_sc0001168.1_g000008 Rmu_sc0001168.1_g000019 Rmu_sc0001986.1_g000042 Rmu_sc0005424.1_g000018
rosa_roxburghii Rroxscaffold_1G00066950 Rroxscaffold_4G00308160 Rroxscaffold_4G00327340 Rroxscaffold_4G00331500 Rroxscaffold_5G00339610 Rroxscaffold_5G00370190 Rroxscaffold_6G00400520 Rroxscaffold_7G00188200
rosa_rugosa Rorug01G0035100 Rorug01G0035200 Rorug01G0131800.1 Rorug01G0193700 Rorug03G0291700 Rorug03G0291800 Rorug03G0291800 Rorug03G0291900 Rorug03G0364400.1 Rorug04G0439300 Rorug04G0439400 Rorug05G0543000 Rorug07G0306800
rosa_samantha Rh1AG048400 Rh1AG309400 Rh1AG358100 Rh1AG424800 Rh1BG046200 Rh1CG052500 Rh1DG056700 Rh2AG452600 Rh2BG465300 Rh2CG439500 Rh2DG245700 Rh2DG245800 Rh2DG474300 Rh4AG053000 Rh4BG050900 Rh4CG057700 Rh4DG049700 Rh5BG052500 Rh5DG543800 Rh6DG164300 Rh7AG422900 Rh7BG328900
rosa_wichuraiana Rw1G004380 Rw4G004270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 12
AccIII TCCGGA 1 cut(s) 45
AciI CCGC 5 cut(s) 5, 52, 164, 167, 187
AcoI YGGCCR 1 cut(s) 181
AcyI GRCGYC 1 cut(s) 9
AfiI CCNNNNNNNGG 1 cut(s) 45
AjnI CCWGG 1 cut(s) 144
AluBI AGCT 2 cut(s) 31, 152
AluI AGCT 2 cut(s) 31, 152
Alw26I GTCTC 3 cut(s) 23, 47, 68
Aor13HI TCCGGA 1 cut(s) 45
AoxI GGCC 1 cut(s) 181
ApeKI GCWGC 3 cut(s) 149, 152, 197
Asp700I GAANNNNTTC 1 cut(s) 99
AsuHPI GGTGA 1 cut(s) 126
BalI TGGCCA 1 cut(s) 183
BauI CACGAG 1 cut(s) 20
BbvI GCAGC 3 cut(s) 139, 161, 184
BccI CCATC 1 cut(s) 139
BceAI ACGGC 1 cut(s) 105
BciT130I CCWGG 1 cut(s) 146
BcoDI GTCTC 3 cut(s) 23, 47, 68
BisI GCNGC 5 cut(s) 150, 153, 165, 188, 198
BlsI GCNGC 5 cut(s) 151, 154, 166, 189, 199
Bme1390I CCNGG 1 cut(s) 146
BmrFI CCNGG 1 cut(s) 146
BsaHI GRCGYC 1 cut(s) 9
BsaI GGTCTC 1 cut(s) 23
BsaJI CCNNGG 1 cut(s) 13
BsaWI WCCGGW 1 cut(s) 45
Bsc4I CCNNNNNNNGG 1 cut(s) 45
Bse1I ACTGG 1 cut(s) 39
BseAI TCCGGA 1 cut(s) 45
BseBI CCWGG 1 cut(s) 146
BseDI CCNNGG 1 cut(s) 13
BseLI CCNNNNNNNGG 1 cut(s) 45
BseNI ACTGG 1 cut(s) 39
BseXI GCAGC 3 cut(s) 139, 161, 184
BshFI GGCC 1 cut(s) 183
BsiSI CCGG 1 cut(s) 46
BslI CCNNNNNNNGG 1 cut(s) 45
BsmAI GTCTC 3 cut(s) 23, 47, 68
BsnI GGCC 1 cut(s) 183
Bso31I GGTCTC 1 cut(s) 23
Bsp13I TCCGGA 1 cut(s) 45
BspACI CCGC 5 cut(s) 5, 52, 164, 167, 187
BspANI GGCC 1 cut(s) 183
BspEI TCCGGA 1 cut(s) 45
BspTNI GGTCTC 1 cut(s) 23
BsrI ACTGG 1 cut(s) 39
BssECI CCNNGG 1 cut(s) 13
BssNI GRCGYC 1 cut(s) 9
BssSI CACGAG 1 cut(s) 20
BssT1I CCWWGG 1 cut(s) 13
Bst2BI CACGAG 1 cut(s) 20
Bst2UI CCWGG 1 cut(s) 146
Bst4CI ACNGT 1 cut(s) 109
BstACI GRCGYC 1 cut(s) 9
BstC8I GCNNGC 2 cut(s) 33, 185
BstMAI GTCTC 3 cut(s) 23, 47, 68
BstMWI GCNNNNNNNGC 1 cut(s) 161
BstNI CCWGG 1 cut(s) 146
BstSCI CCNGG 1 cut(s) 144
BstV1I GCAGC 3 cut(s) 139, 161, 184
BsuRI GGCC 1 cut(s) 183
Cac8I GCNNGC 2 cut(s) 33, 185
CviJI RGCY 5 cut(s) 31, 85, 152, 183, 190
CviKI_1 RGCY 5 cut(s) 31, 85, 152, 183, 190
EaeI YGGCCR 1 cut(s) 181
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 1 cut(s) 13
Eco31I GGTCTC 1 cut(s) 23
EcoRII CCWGG 1 cut(s) 144
EcoT14I CCWWGG 1 cut(s) 13
ErhI CCWWGG 1 cut(s) 13
FaiI YATR 2 cut(s) 113, 215
Fnu4HI GCNGC 5 cut(s) 150, 153, 165, 188, 198
Fsp4HI GCNGC 5 cut(s) 150, 153, 165, 188, 198
GluI GCNGC 5 cut(s) 150, 153, 165, 188, 198
HaeIII GGCC 1 cut(s) 183
HapII CCGG 1 cut(s) 46
Hin1I GRCGYC 1 cut(s) 9
HpaII CCGG 1 cut(s) 46
HphI GGTGA 1 cut(s) 126
Hpy166II GTNNAC 1 cut(s) 68
Hpy188I TCNGA 1 cut(s) 105
Hpy188III TCNNGA 2 cut(s) 22, 46
Hpy8I GTNNAC 1 cut(s) 68
HpyCH4III ACNGT 1 cut(s) 109
HpyCH4IV ACGT 1 cut(s) 9
HpyF10VI GCNNNNNNNGC 1 cut(s) 161
HpySE526I ACGT 1 cut(s) 9
Hsp92I GRCGYC 1 cut(s) 9
Kpn2I TCCGGA 1 cut(s) 45
LpnPI CCDG 6 cut(s) 52, 59, 131, 158, 197, 219
Lsp1109I GCAGC 3 cut(s) 139, 161, 184
MaeII ACGT 1 cut(s) 9
MlsI TGGCCA 1 cut(s) 183
MluCI AATT 1 cut(s) 95
MluNI TGGCCA 1 cut(s) 183
MnlI CCTC 2 cut(s) 55, 167
Mox20I TGGCCA 1 cut(s) 183
MroI TCCGGA 1 cut(s) 45
MroXI GAANNNNTTC 1 cut(s) 99
MscI TGGCCA 1 cut(s) 183
Msp20I TGGCCA 1 cut(s) 183
MspA1I CMGCKG 2 cut(s) 152, 187
MspI CCGG 1 cut(s) 46
MspR9I CCNGG 1 cut(s) 146
MvaI CCWGG 1 cut(s) 146
MwoI GCNNNNNNNGC 1 cut(s) 161
NmeAIII GCCGAG 1 cut(s) 61
PdmI GAANNNNTTC 1 cut(s) 99
PkrI GCNGC 5 cut(s) 151, 154, 166, 189, 199
Psp6I CCWGG 1 cut(s) 144
PspGI CCWGG 1 cut(s) 144
PvuII CAGCTG 1 cut(s) 152
SatI GCNGC 5 cut(s) 150, 153, 165, 188, 198
ScrFI CCNGG 1 cut(s) 146
SetI ASST 5 cut(s) 12, 19, 33, 139, 154
Sse9I AATT 1 cut(s) 95
SsiI CCGC 5 cut(s) 5, 52, 164, 167, 187
StyD4I CCNGG 1 cut(s) 144
StyI CCWWGG 1 cut(s) 13
TaaI ACNGT 1 cut(s) 109
TaiI ACGT 1 cut(s) 12
TaqI TCGA 1 cut(s) 60
TasI AATT 1 cut(s) 95
TauI GCSGC 2 cut(s) 167, 190
TseI GCWGC 3 cut(s) 149, 152, 197
XmnI GAANNNNTTC 1 cut(s) 99
ZraI GACGTC 1 cut(s) 10
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.