RLG00000014710

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000605
Physical Location & Seq
Reverse (-)
56638970 .. 56643263
4294 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014710

Sequence Viewer

Length: 510 bp
ATGGCGGTCCACCATGTTTGGAGATCTCTGGTCATGGTTCAACGTCGGTGTTCACAGCAGACGGGATTAGCTTCTGGCCTGGTCTGGCTACTGATGCCGGTCGCGGTTCATCGGCAGAGTGTTTTGTCAGAGGCGGCGGTCCTACTCCGAGGGAGCACGCGGGAGATAGCAGCCAAGTCCCTGTCGTGGACCCATCTTGCGAGTTTGGGCCTCCCTTGTGGATATGGGTCTGTCAGACAGAACAAGATCAGTTGCTGTCTCCTCCAAACGAAGGGTTCTATTGTCTGCAAAAGCATTGCTGTTCAGAAATCGTTCGTGTTTAGTATACCTTCAGCTGGACGAAGTGTTGGTGATGAATCTAGGGCTCAATACTCTGCTGATGATTTGGTAATCCAACGAAGACTGCTACAGGGAGTTCAGTTTAACTCATGCTTTTATATCAAATATTGGGGAGTACAGAAAGCTATAATGGTAATGGTTGGATGGAGAGATGATGAAATCAATTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

170

Amino Acids

18.73

Weight (kDa)

9.63

Isoelectric Point (pI)

46.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000605)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07300 AT3G07300 AT3G07300
fragaria_vesca FvH4_1g26370 FvH4_4g04150 FvH4_7g02780 FvH4_7g02780 FvH4_7g02780 FvH4_7g02780
malus_domestica MD02G1290200.v1.1 MD07G1036800.v1.1 MD13G1218100.v1.1 MD13G1218200.v1.1
prunus_persica Prupe.1G044800_v2.0.a1 Prupe.2G032300_v2.0.a1 Prupe.2G032300_v2.0.a1 Prupe.2G032300_v2.0.a1
pyrus_communis pycom07g02550
rosa_chinensis RchiOBHm_Chr1g0313651 RchiOBHm_Chr1g0322021 RchiOBHm_Chr1g0322871 RchiOBHm_Chr1g0322881 RchiOBHm_Chr1g0378031 RchiOBHm_Chr2g0146721 RchiOBHm_Chr4g0394571 RchiOBHm_Chr4g0444661
rosa_laevigata RLG00000009689 RLG00000014710 RLG00000020215 RLG00000028674 RLG00000030393
rosa_multiflora Rmu_sc0001168.1_g000008 Rmu_sc0001168.1_g000019 Rmu_sc0001986.1_g000042 Rmu_sc0005424.1_g000018
rosa_roxburghii Rroxscaffold_1G00066950 Rroxscaffold_4G00308160 Rroxscaffold_4G00327340 Rroxscaffold_4G00331500 Rroxscaffold_5G00339610 Rroxscaffold_5G00370190 Rroxscaffold_6G00400520 Rroxscaffold_7G00188200
rosa_rugosa Rorug01G0035100 Rorug01G0035200 Rorug01G0131800.1 Rorug01G0193700 Rorug03G0291700 Rorug03G0291800 Rorug03G0291800 Rorug03G0291900 Rorug03G0364400.1 Rorug04G0439300 Rorug04G0439400 Rorug05G0543000 Rorug07G0306800
rosa_samantha Rh1AG048400 Rh1AG309400 Rh1AG358100 Rh1AG424800 Rh1BG046200 Rh1CG052500 Rh1DG056700 Rh2AG452600 Rh2BG465300 Rh2CG439500 Rh2DG245700 Rh2DG245800 Rh2DG474300 Rh4AG053000 Rh4BG050900 Rh4CG057700 Rh4DG049700 Rh5BG052500 Rh5DG543800 Rh6DG164300 Rh7AG422900 Rh7BG328900
rosa_wichuraiana Rw1G004380 Rw4G004270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 325
AccII CGCG 2 cut(s) 104, 160
AciI CCGC 5 cut(s) 5, 104, 134, 137, 160
AcuI CTGAAG 1 cut(s) 315
AfaI GTAC 1 cut(s) 456
AfiI CCNNNNNNNGG 3 cut(s) 186, 271, 335
AgsI TTSAA 1 cut(s) 41
AjnI CCWGG 1 cut(s) 78
AluBI AGCT 3 cut(s) 71, 335, 464
AluI AGCT 3 cut(s) 71, 335, 464
Alw21I GWGCWC 1 cut(s) 158
Alw26I GTCTC 1 cut(s) 263
AlwNI CAGNNNCTG 1 cut(s) 255
AoxI GGCC 2 cut(s) 76, 208
ApeKI GCWGC 1 cut(s) 170
Asp700I GAANNNNTTC 1 cut(s) 311
AspS9I GGNCC 4 cut(s) 7, 139, 189, 208
AsuHPI GGTGA 1 cut(s) 362
AvaII GGWCC 3 cut(s) 7, 139, 189
BanII GRGCYC 1 cut(s) 367
BbsI GAAGAC 1 cut(s) 406
Bbv12I GWGCWC 1 cut(s) 158
BbvI GCAGC 1 cut(s) 182
BccI CCATC 2 cut(s) 201, 477
BciT130I CCWGG 1 cut(s) 80
BcoDI GTCTC 1 cut(s) 263
BfaI CTAG 1 cut(s) 360
BfmI CTRYAG 1 cut(s) 407
BglII AGATCT 1 cut(s) 23
BisI GCNGC 2 cut(s) 135, 171
BlsI GCNGC 2 cut(s) 136, 172
Bme1390I CCNGG 1 cut(s) 80
Bme18I GGWCC 3 cut(s) 7, 139, 189
BmgT120I GGNCC 4 cut(s) 7, 139, 189, 208
BmiI GGNNCC 1 cut(s) 191
BmrFI CCNGG 1 cut(s) 80
BmsI GCATC 1 cut(s) 84
BpiI GAAGAC 1 cut(s) 406
BsaJI CCNNGG 1 cut(s) 148
Bsc4I CCNNNNNNNGG 3 cut(s) 186, 271, 335
Bse118I RCCGGY 1 cut(s) 97
Bse3DI GCAATG 1 cut(s) 294
BseBI CCWGG 1 cut(s) 80
BseDI CCNNGG 1 cut(s) 148
BseGI GGATG 1 cut(s) 488
BseLI CCNNNNNNNGG 3 cut(s) 186, 271, 335
BseMI GCAATG 1 cut(s) 294
BseRI GAGGAG 1 cut(s) 251
BseXI GCAGC 1 cut(s) 182
Bsh1236I CGCG 2 cut(s) 104, 160
Bsh1285I CGRYCG 1 cut(s) 102
BshFI GGCC 2 cut(s) 78, 210
BsiEI CGRYCG 1 cut(s) 102
BsiHKAI GWGCWC 1 cut(s) 158
BsiSI CCGG 1 cut(s) 98
BslFI GGGAC 1 cut(s) 163
BslI CCNNNNNNNGG 3 cut(s) 186, 271, 335
BsmAI GTCTC 1 cut(s) 263
BsmFI GGGAC 1 cut(s) 163
BsnI GGCC 2 cut(s) 78, 210
Bsp1286I GDGCHC 2 cut(s) 158, 367
Bsp143I GATC 2 cut(s) 23, 246
BspACI CCGC 5 cut(s) 5, 104, 134, 137, 160
BspANI GGCC 2 cut(s) 78, 210
BspFNI CGCG 2 cut(s) 104, 160
BspLI GGNNCC 1 cut(s) 191
BsrDI GCAATG 1 cut(s) 294
BsrFI RCCGGY 1 cut(s) 97
BssAI RCCGGY 1 cut(s) 97
BssECI CCNNGG 1 cut(s) 148
BssMI GATC 2 cut(s) 23, 246
BssNAI GTATAC 1 cut(s) 326
Bst1107I GTATAC 1 cut(s) 326
Bst2UI CCWGG 1 cut(s) 80
BstC8I GCNNGC 1 cut(s) 158
BstF5I GGATG 1 cut(s) 488
BstFNI CGCG 2 cut(s) 104, 160
BstKTI GATC 2 cut(s) 26, 249
BstMAI GTCTC 1 cut(s) 263
BstMBI GATC 2 cut(s) 23, 246
BstMCI CGRYCG 1 cut(s) 102
BstMWI GCNNNNNNNGC 1 cut(s) 94
BstNI CCWGG 1 cut(s) 80
BstSCI CCNGG 1 cut(s) 78
BstSFI CTRYAG 1 cut(s) 407
BstUI CGCG 2 cut(s) 104, 160
BstV1I GCAGC 1 cut(s) 182
BstV2I GAAGAC 1 cut(s) 406
BstX2I RGATCY 1 cut(s) 23
BstYI RGATCY 1 cut(s) 23
BstZ17I GTATAC 1 cut(s) 326
BsuRI GGCC 2 cut(s) 78, 210
BtsCI GGATG 1 cut(s) 488
Cac8I GCNNGC 1 cut(s) 158
CaiI CAGNNNCTG 1 cut(s) 255
Cfr10I RCCGGY 1 cut(s) 97
Cfr13I GGNCC 4 cut(s) 7, 139, 189, 208
Csp6I GTAC 1 cut(s) 455
CspCI CAANNNNNGTGG 1 cut(s) 34
CviAII CATG 3 cut(s) 14, 34, 429
CviJI RGCY 8 cut(s) 71, 78, 88, 173, 210, 335, 365, 464
CviKI_1 RGCY 8 cut(s) 71, 78, 88, 173, 210, 335, 365, 464
CviQI GTAC 1 cut(s) 455
DpnI GATC 2 cut(s) 25, 248
DpnII GATC 2 cut(s) 23, 246
Eco24I GRGCYC 1 cut(s) 367
Eco47I GGWCC 3 cut(s) 7, 139, 189
Eco57I CTGAAG 1 cut(s) 315
EcoRII CCWGG 1 cut(s) 78
EcoT38I GRGCYC 1 cut(s) 367
FaeI CATG 3 cut(s) 17, 37, 432
FaiI YATR 7 cut(s) 15, 35, 225, 326, 430, 438, 467
FaqI GGGAC 1 cut(s) 163
FatI CATG 3 cut(s) 13, 33, 428
FauI CCCGC 1 cut(s) 153
FblI GTMKAC 1 cut(s) 325
Fnu4HI GCNGC 2 cut(s) 135, 171
FokI GGATG 1 cut(s) 495
FriOI GRGCYC 1 cut(s) 367
Fsp4HI GCNGC 2 cut(s) 135, 171
FspBI CTAG 1 cut(s) 360
GluI GCNGC 2 cut(s) 135, 171
HaeIII GGCC 2 cut(s) 78, 210
HapII CCGG 1 cut(s) 98
Hin1II CATG 3 cut(s) 17, 37, 432
HinfI GANTC 1 cut(s) 356
HpaII CCGG 1 cut(s) 98
HphI GGTGA 1 cut(s) 362
Hpy166II GTNNAC 4 cut(s) 10, 53, 189, 326
Hpy188I TCNGA 4 cut(s) 130, 149, 236, 306
Hpy8I GTNNAC 4 cut(s) 10, 53, 189, 326
Hpy99I CGWCG 1 cut(s) 48
HpyAV CCTTC 2 cut(s) 265, 339
HpyCH4IV ACGT 1 cut(s) 43
HpyCH4V TGCA 1 cut(s) 288
HpyF10VI GCNNNNNNNGC 1 cut(s) 94
HpySE526I ACGT 1 cut(s) 43
Hsp92II CATG 3 cut(s) 17, 37, 432
Kzo9I GATC 2 cut(s) 23, 246
LmnI GCTCC 1 cut(s) 153
LpnPI CCDG 9 cut(s) 14, 60, 65, 70, 92, 111, 194, 321, 395
Lsp1109I GCAGC 1 cut(s) 182
LweI GCATC 1 cut(s) 84
MaeI CTAG 1 cut(s) 360
MaeII ACGT 1 cut(s) 43
MalI GATC 2 cut(s) 25, 248
MboI GATC 2 cut(s) 23, 246
MboII GAAGA 1 cut(s) 411
MfeI CAATTG 1 cut(s) 502
MflI RGATCY 1 cut(s) 23
MhlI GDGCHC 2 cut(s) 158, 367
MluCI AATT 1 cut(s) 502
MmeI TCCRAC 2 cut(s) 418, 460
MnlI CCTC 4 cut(s) 124, 143, 221, 272
MroXI GAANNNNTTC 1 cut(s) 311
MseI TTAA 1 cut(s) 423
MspA1I CMGCKG 1 cut(s) 335
MspI CCGG 1 cut(s) 98
MspR9I CCNGG 1 cut(s) 80
MunI CAATTG 1 cut(s) 502
MvaI CCWGG 1 cut(s) 80
MvnI CGCG 2 cut(s) 104, 160
MwoI GCNNNNNNNGC 1 cut(s) 94
NdeII GATC 2 cut(s) 23, 246
NlaIII CATG 3 cut(s) 17, 37, 432
NlaIV GGNNCC 1 cut(s) 191
PdmI GAANNNNTTC 1 cut(s) 311
PfeI GAWTC 1 cut(s) 356
PkrI GCNGC 2 cut(s) 136, 172
Psp6I CCWGG 1 cut(s) 78
PspGI CCWGG 1 cut(s) 78
PspN4I GGNNCC 1 cut(s) 191
PspPI GGNCC 4 cut(s) 7, 139, 189, 208
PstNI CAGNNNCTG 1 cut(s) 255
PsuI RGATCY 1 cut(s) 23
PvuII CAGCTG 1 cut(s) 335
RsaI GTAC 1 cut(s) 456
RsaNI GTAC 1 cut(s) 455
SaqAI TTAA 1 cut(s) 423
SatI GCNGC 2 cut(s) 135, 171
Sau3AI GATC 2 cut(s) 23, 246
Sau96I GGNCC 4 cut(s) 7, 139, 189, 208
ScrFI CCNGG 1 cut(s) 80
SduI GDGCHC 2 cut(s) 158, 367
SetI ASST 5 cut(s) 46, 73, 331, 337, 466
SfaNI GCATC 1 cut(s) 84
SfcI CTRYAG 1 cut(s) 407
SinI GGWCC 3 cut(s) 7, 139, 189
Sse9I AATT 1 cut(s) 502
SsiI CCGC 5 cut(s) 5, 104, 134, 137, 160
SspI AATATT 1 cut(s) 446
SspMI CTAG 1 cut(s) 360
StyD4I CCNGG 1 cut(s) 78
TaiI ACGT 1 cut(s) 46
TasI AATT 1 cut(s) 502
TatI WGTACW 1 cut(s) 454
TauI GCSGC 1 cut(s) 137
TfiI GAWTC 1 cut(s) 356
Tru1I TTAA 1 cut(s) 423
Tru9I TTAA 1 cut(s) 423
TseI GCWGC 1 cut(s) 170
TspDTI ATGAA 3 cut(s) 98, 369, 510
VpaK11BI GGWCC 3 cut(s) 7, 139, 189
XmiI GTMKAC 1 cut(s) 325
XmnI GAANNNNTTC 1 cut(s) 311
XspI CTAG 1 cut(s) 360
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.