Rh7AG422900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000605
Physical Location & Seq
Reverse (-)
56899384 .. 56918772
19389 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG422900.1

Sequence Viewer

Length: 297 bp
ATGGCCGACTTTCAGATCGAACAACAAAGCATTACAAACCAAGTTGTGGGCTACTACAGTAAATATTTGACTGAGAGGGAATTGAGAGGGAATCGAGTTGCTCTTCCACAGAAACCAGCTTATTCATCAAAGCCACGGAGAATCGAGGACTTGGATGATCCCGGAGCTCCGCCGCATCAACCAGCCCATTACGGCCCTGCTCTCAGTAATTATTCTCCCAGCTGGGCTCTGGGGTTGTTGTGTGACAACTCAGGCCATGAAGTACTGCCTTACACTCTTTCGCAGGAGAAAGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

98

Amino Acids

11.02

Weight (kDa)

5.51

Isoelectric Point (pI)

62.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000605)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07300 AT3G07300 AT3G07300
fragaria_vesca FvH4_1g26370 FvH4_4g04150 FvH4_7g02780 FvH4_7g02780 FvH4_7g02780 FvH4_7g02780
malus_domestica MD02G1290200.v1.1 MD07G1036800.v1.1 MD13G1218100.v1.1 MD13G1218200.v1.1
prunus_persica Prupe.1G044800_v2.0.a1 Prupe.2G032300_v2.0.a1 Prupe.2G032300_v2.0.a1 Prupe.2G032300_v2.0.a1
pyrus_communis pycom07g02550
rosa_chinensis RchiOBHm_Chr1g0313651 RchiOBHm_Chr1g0322021 RchiOBHm_Chr1g0322871 RchiOBHm_Chr1g0322881 RchiOBHm_Chr1g0378031 RchiOBHm_Chr2g0146721 RchiOBHm_Chr4g0394571 RchiOBHm_Chr4g0444661
rosa_laevigata RLG00000009689 RLG00000014710 RLG00000020215 RLG00000028674 RLG00000030393
rosa_multiflora Rmu_sc0001168.1_g000008 Rmu_sc0001168.1_g000019 Rmu_sc0001986.1_g000042 Rmu_sc0005424.1_g000018
rosa_roxburghii Rroxscaffold_1G00066950 Rroxscaffold_4G00308160 Rroxscaffold_4G00327340 Rroxscaffold_4G00331500 Rroxscaffold_5G00339610 Rroxscaffold_5G00370190 Rroxscaffold_6G00400520 Rroxscaffold_7G00188200
rosa_rugosa Rorug01G0035100 Rorug01G0035200 Rorug01G0131800.1 Rorug01G0193700 Rorug03G0291700 Rorug03G0291800 Rorug03G0291800 Rorug03G0291900 Rorug03G0364400.1 Rorug04G0439300 Rorug04G0439400 Rorug05G0543000 Rorug07G0306800
rosa_samantha Rh1AG048400 Rh1AG309400 Rh1AG358100 Rh1AG424800 Rh1BG046200 Rh1CG052500 Rh1DG056700 Rh2AG452600 Rh2BG465300 Rh2CG439500 Rh2DG245700 Rh2DG245800 Rh2DG474300 Rh4AG053000 Rh4BG050900 Rh4CG057700 Rh4DG049700 Rh5BG052500 Rh5DG543800 Rh6DG164300 Rh7AG422900 Rh7BG328900
rosa_wichuraiana Rw1G004380 Rw4G004270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 46
AciI CCGC 2 cut(s) 170, 173
AclWI GGATC 1 cut(s) 152
AcoI YGGCCR 1 cut(s) 3
AfaI GTAC 1 cut(s) 264
AfiI CCNNNNNNNGG 1 cut(s) 46
AluBI AGCT 3 cut(s) 119, 167, 222
AluI AGCT 3 cut(s) 119, 167, 222
Alw21I GWGCWC 1 cut(s) 169
AlwI GGATC 1 cut(s) 152
AoxI GGCC 3 cut(s) 3, 193, 253
AspS9I GGNCC 1 cut(s) 194
AsuC2I CCSGG 1 cut(s) 162
BanII GRGCYC 2 cut(s) 169, 229
Bbv12I GWGCWC 1 cut(s) 169
BceAI ACGGC 1 cut(s) 208
BcnI CCSGG 1 cut(s) 162
BfmI CTRYAG 1 cut(s) 55
BisI GCNGC 1 cut(s) 173
BlsI GCNGC 1 cut(s) 174
BmcAI AGTACT 1 cut(s) 264
Bme1390I CCNGG 1 cut(s) 162
BmgT120I GGNCC 1 cut(s) 194
BmrFI CCNGG 1 cut(s) 162
BmsI GCATC 1 cut(s) 184
BpuMI CCSGG 1 cut(s) 162
BsaJI CCNNGG 1 cut(s) 134
Bsc4I CCNNNNNNNGG 1 cut(s) 46
BseDI CCNNGG 1 cut(s) 134
BseGI GGATG 1 cut(s) 160
BseLI CCNNNNNNNGG 1 cut(s) 46
BseMII CTCAG 3 cut(s) 63, 217, 264
BseYI CCCAGC 2 cut(s) 218, 222
BshFI GGCC 3 cut(s) 5, 195, 255
BsiHKAI GWGCWC 1 cut(s) 169
BsiSI CCGG 1 cut(s) 162
BslI CCNNNNNNNGG 1 cut(s) 46
BsnI GGCC 3 cut(s) 5, 195, 255
Bsp1286I GDGCHC 2 cut(s) 169, 229
Bsp143I GATC 2 cut(s) 15, 157
BspACI CCGC 2 cut(s) 170, 173
BspANI GGCC 3 cut(s) 5, 195, 255
BspCNI CTCAG 3 cut(s) 64, 216, 263
BspPI GGATC 1 cut(s) 152
BspQI GCTCTTC 1 cut(s) 108
BssECI CCNNGG 1 cut(s) 134
BssMI GATC 2 cut(s) 15, 157
Bst4CI ACNGT 1 cut(s) 59
Bst6I CTCTTC 1 cut(s) 108
BstDEI CTNAG 3 cut(s) 72, 203, 250
BstDSI CCRYGG 1 cut(s) 134
BstF5I GGATG 1 cut(s) 160
BstKTI GATC 2 cut(s) 18, 160
BstMBI GATC 2 cut(s) 15, 157
BstSCI CCNGG 1 cut(s) 160
BstSFI CTRYAG 1 cut(s) 55
BsuRI GGCC 3 cut(s) 5, 195, 255
BtgI CCRYGG 1 cut(s) 134
BtsCI GGATG 1 cut(s) 160
Cfr13I GGNCC 1 cut(s) 194
Csp6I GTAC 1 cut(s) 263
CviAII CATG 1 cut(s) 257
CviQI GTAC 1 cut(s) 263
DdeI CTNAG 3 cut(s) 72, 203, 250
DpnI GATC 2 cut(s) 17, 159
DpnII GATC 2 cut(s) 15, 157
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 108
EarI CTCTTC 1 cut(s) 108
EciI GGCGGA 1 cut(s) 159
Ecl136II GAGCTC 1 cut(s) 167
Eco24I GRGCYC 2 cut(s) 169, 229
Eco53kI GAGCTC 1 cut(s) 167
EcoICRI GAGCTC 1 cut(s) 167
EcoT38I GRGCYC 2 cut(s) 169, 229
FaeI CATG 1 cut(s) 260
FaiI YATR 1 cut(s) 258
FatI CATG 1 cut(s) 256
Fnu4HI GCNGC 1 cut(s) 173
FokI GGATG 1 cut(s) 167
FriOI GRGCYC 2 cut(s) 169, 229
Fsp4HI GCNGC 1 cut(s) 173
GluI GCNGC 1 cut(s) 173
GsaI CCCAGC 2 cut(s) 222, 226
HaeIII GGCC 3 cut(s) 5, 195, 255
HapII CCGG 1 cut(s) 162
Hin1II CATG 1 cut(s) 260
HinfI GANTC 2 cut(s) 91, 141
HpaII CCGG 1 cut(s) 162
Hpy188I TCNGA 1 cut(s) 15
HpyCH4III ACNGT 1 cut(s) 59
HpyF3I CTNAG 3 cut(s) 72, 203, 250
Hsp92II CATG 1 cut(s) 260
Kzo9I GATC 2 cut(s) 15, 157
LguI GCTCTTC 1 cut(s) 108
LmnI GCTCC 2 cut(s) 164, 172
LpnPI CCDG 9 cut(s) 129, 175, 195, 208, 210, 215, 232, 237, 269
LweI GCATC 1 cut(s) 184
MaeIII GTNAC 1 cut(s) 242
MalI GATC 2 cut(s) 17, 159
MboI GATC 2 cut(s) 15, 157
MboII GAAGA 1 cut(s) 95
MhlI GDGCHC 2 cut(s) 169, 229
MluCI AATT 2 cut(s) 80, 208
MnlI CCTC 3 cut(s) 69, 80, 139
MspA1I CMGCKG 1 cut(s) 222
MspI CCGG 1 cut(s) 162
MspR9I CCNGG 1 cut(s) 162
NciI CCSGG 1 cut(s) 162
NdeII GATC 2 cut(s) 15, 157
NlaIII CATG 1 cut(s) 260
NmuCI GTSAC 1 cut(s) 242
PciSI GCTCTTC 1 cut(s) 108
PfeI GAWTC 2 cut(s) 91, 141
PflMI CCANNNNNTGG 1 cut(s) 46
PfoI TCCNGGA 1 cut(s) 160
PkrI GCNGC 1 cut(s) 174
Psp124BI GAGCTC 1 cut(s) 169
PspFI CCCAGC 2 cut(s) 218, 222
PspPI GGNCC 1 cut(s) 194
PvuII CAGCTG 1 cut(s) 222
RsaI GTAC 1 cut(s) 264
RsaNI GTAC 1 cut(s) 263
SacI GAGCTC 1 cut(s) 169
SapI GCTCTTC 1 cut(s) 108
SatI GCNGC 1 cut(s) 173
Sau3AI GATC 2 cut(s) 15, 157
Sau96I GGNCC 1 cut(s) 194
ScaI AGTACT 1 cut(s) 264
ScrFI CCNGG 1 cut(s) 162
SduI GDGCHC 2 cut(s) 169, 229
SetI ASST 3 cut(s) 121, 169, 224
SfaNI GCATC 1 cut(s) 184
SfcI CTRYAG 1 cut(s) 55
Sse9I AATT 2 cut(s) 80, 208
SsiI CCGC 2 cut(s) 170, 173
SspI AATATT 1 cut(s) 65
SstI GAGCTC 1 cut(s) 169
StyD4I CCNGG 1 cut(s) 160
TaaI ACNGT 1 cut(s) 59
TaqI TCGA 3 cut(s) 18, 94, 144
TasI AATT 2 cut(s) 80, 208
TatI WGTACW 1 cut(s) 262
TauI GCSGC 1 cut(s) 175
TfiI GAWTC 2 cut(s) 91, 141
TseFI GTSAC 1 cut(s) 242
Tsp45I GTSAC 1 cut(s) 242
TspDTI ATGAA 2 cut(s) 114, 273
TspGWI ACGGA 1 cut(s) 151
Van91I CCANNNNNTGG 1 cut(s) 46
XcmI CCANNNNNNNNNTGG 1 cut(s) 226
ZrmI AGTACT 1 cut(s) 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.