Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0000605

Physical Location & Seq

Genomic Coordinates Reverse (-)

5941548 .. 5942320

Gene Structure 773 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0035100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGCATACTATGTCCTCATTTCTTCTCTTCATTCTCTTCACAATTTTCTCCACCTTTTTCTTCTCCATTGATGGAGTTCTAATCAGGCAATTCTTCAAGGCAGATAAGAAAAAAGAAGAAGAAACGCATCTCCACTTTTTCTTCCATGACATTCTTAGTGGCAAAAGTCCAAGTGCTGTCAGAATTATCGGCGCGCCAAACAGCAGCCTCTCCAGCTTCGGTTCCACCTTGATGATTGATGATGCGCTCACTGAAAAGCAAGATCCCACATCGAAGATCATCGGACGAGCACAAGGGTTTTACTCAGTGGCTGCACAACAGGAGATTGCACTGCTTATGGTCATGAGTTTTCAGTTTGTGGAGGGTCAGTATAAGGGGAGTAGCATCAGCATTCTTGGGAGGAATCCAGTGATGAACGATGTCAGGGAGATGCCGATTGTTGGAGGCACCGGATTGTTTCGGTTTGCTCGTGGCTATGTTTTAGCACATACGGTTTGGTTTGATGCTAATACAGGAGACGCCATTGTTGAGTACAATGTTTATGTGTCACAGACATCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005851 GO:0017076 GO:0019001 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032991 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0044424 GO:0044444 GO:0044464 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

IF-2B

Protein Analysis

186

Amino Acids

20.76

Weight (kDa)

6.18

Isoelectric Point (pI)

38.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dirigent	PF03018	42 - 182	2.2e-56	Dirigent-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000605)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07300 AT3G07300 AT3G07300
fragaria_vesca	FvH4_1g26370 FvH4_4g04150 FvH4_7g02780 FvH4_7g02780 FvH4_7g02780 FvH4_7g02780
malus_domestica	MD02G1290200.v1.1 MD07G1036800.v1.1 MD13G1218100.v1.1 MD13G1218200.v1.1
prunus_persica	Prupe.1G044800_v2.0.a1 Prupe.2G032300_v2.0.a1 Prupe.2G032300_v2.0.a1 Prupe.2G032300_v2.0.a1
pyrus_communis	pycom07g02550
rosa_chinensis	RchiOBHm_Chr1g0313651 RchiOBHm_Chr1g0322021 RchiOBHm_Chr1g0322871 RchiOBHm_Chr1g0322881 RchiOBHm_Chr1g0378031 RchiOBHm_Chr2g0146721 RchiOBHm_Chr4g0394571 RchiOBHm_Chr4g0444661
rosa_laevigata	RLG00000009689 RLG00000014710 RLG00000020215 RLG00000028674 RLG00000030393
rosa_multiflora	Rmu_sc0001168.1_g000008 Rmu_sc0001168.1_g000019 Rmu_sc0001986.1_g000042 Rmu_sc0005424.1_g000018
rosa_roxburghii	Rroxscaffold_1G00066950 Rroxscaffold_4G00308160 Rroxscaffold_4G00327340 Rroxscaffold_4G00331500 Rroxscaffold_5G00339610 Rroxscaffold_5G00370190 Rroxscaffold_6G00400520 Rroxscaffold_7G00188200
rosa_rugosa	Rorug01G0035100 Rorug01G0035200 Rorug01G0131800.1 Rorug01G0193700 Rorug03G0291700 Rorug03G0291800 Rorug03G0291800 Rorug03G0291900 Rorug03G0364400.1 Rorug04G0439300 Rorug04G0439400 Rorug05G0543000 Rorug07G0306800
rosa_samantha	Rh1AG048400 Rh1AG309400 Rh1AG358100 Rh1AG424800 Rh1BG046200 Rh1CG052500 Rh1DG056700 Rh2AG452600 Rh2BG465300 Rh2CG439500 Rh2DG245700 Rh2DG245800 Rh2DG474300 Rh4AG053000 Rh4BG050900 Rh4CG057700 Rh4DG049700 Rh5BG052500 Rh5DG543800 Rh6DG164300 Rh7AG422900 Rh7BG328900
rosa_wichuraiana	Rw1G004380 Rw4G004270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	446
AccII	CGCG	1 cut(s)	194
AclWI	GGATC	1 cut(s)	257
AcyI	GRCGYC	1 cut(s)	519
AfaI	GTAC	1 cut(s)	533
AfiI	CCNNNNNNNGG	1 cut(s)	440
AgsI	TTSAA	1 cut(s)	97
AluBI	AGCT	1 cut(s)	216
AluI	AGCT	1 cut(s)	216
Alw21I	GWGCWC	1 cut(s)	292
Alw26I	GTCTC	1 cut(s)	510
AlwI	GGATC	1 cut(s)	257
AlwNI	CAGNNNCTG	1 cut(s)	311
ApeKI	GCWGC	2 cut(s)	204, 311
AscI	GGCGCGCC	1 cut(s)	192
AspLEI	GCGC	3 cut(s)	194, 196, 247
BanI	GGYRCC	1 cut(s)	446
BauI	CACGAG	1 cut(s)	468
Bbv12I	GWGCWC	1 cut(s)	292
BbvI	GCAGC	2 cut(s)	216, 298
BccI	CCATC	1 cut(s)	65
BcoDI	GTCTC	1 cut(s)	510
BisI	GCNGC	2 cut(s)	205, 312
BlsI	GCNGC	2 cut(s)	206, 313
BmiI	GGNNCC	2 cut(s)	223, 448
BmsI	GCATC	5 cut(s)	136, 232, 393, 420, 493
BpmI	CTGGAG	1 cut(s)	196
BsaHI	GRCGYC	1 cut(s)	519
BsaWI	WCCGGW	1 cut(s)	449
BsaXI	ACNNNNNCTCC	2 cut(s)	353, 383
Bsc4I	CCNNNNNNNGG	1 cut(s)	440
Bse1I	ACTGG	1 cut(s)	407
BseLI	CCNNNNNNNGG	1 cut(s)	440
BseMII	CTCAG	1 cut(s)	318
BseNI	ACTGG	1 cut(s)	407
BsePI	GCGCGC	1 cut(s)	192
BseXI	GCAGC	2 cut(s)	216, 298
BsgI	GTGCAG	1 cut(s)	297
Bsh1236I	CGCG	1 cut(s)	194
BshNI	GGYRCC	1 cut(s)	446
BsiHKAI	GWGCWC	1 cut(s)	292
BsiSI	CCGG	1 cut(s)	450
BslI	CCNNNNNNNGG	1 cut(s)	440
BsmAI	GTCTC	1 cut(s)	510
BsmBI	CGTCTC	1 cut(s)	510
BsmI	GAATGC	1 cut(s)	390
Bsp1286I	GDGCHC	1 cut(s)	292
Bsp143I	GATC	2 cut(s)	262, 276
BspCNI	CTCAG	1 cut(s)	317
BspFNI	CGCG	1 cut(s)	194
BspHI	TCATGA	1 cut(s)	342
BspLI	GGNNCC	2 cut(s)	223, 448
BspPI	GGATC	1 cut(s)	257
BspT107I	GGYRCC	1 cut(s)	446
BsrI	ACTGG	1 cut(s)	407
BssHII	GCGCGC	1 cut(s)	192
BssMI	GATC	2 cut(s)	262, 276
BssNI	GRCGYC	1 cut(s)	519
BssSI	CACGAG	1 cut(s)	468
Bst2BI	CACGAG	1 cut(s)	468
Bst4CI	ACNGT	1 cut(s)	493
Bst6I	CTCTTC	2 cut(s)	32, 41
BstACI	GRCGYC	1 cut(s)	519
BstC8I	GCNNGC	1 cut(s)	194
BstDEI	CTNAG	2 cut(s)	155, 304
BstFNI	CGCG	1 cut(s)	194
BstHHI	GCGC	3 cut(s)	194, 196, 247
BstKTI	GATC	2 cut(s)	265, 279
BstMAI	GTCTC	1 cut(s)	510
BstMBI	GATC	2 cut(s)	262, 276
BstMWI	GCNNNNNNNGC	1 cut(s)	213
BstUI	CGCG	1 cut(s)	194
BstV1I	GCAGC	2 cut(s)	216, 298
BstX2I	RGATCY	1 cut(s)	262
BstYI	RGATCY	1 cut(s)	262
BtsI	GCAGTG	1 cut(s)	329
BtsIMutI	CAGTG	4 cut(s)	249, 312, 329, 414
Cac8I	GCNNGC	1 cut(s)	194
CaiI	CAGNNNCTG	1 cut(s)	311
CciI	TCATGA	1 cut(s)	342
CfoI	GCGC	3 cut(s)	194, 196, 247
CseI	GACGC	1 cut(s)	527
Csp6I	GTAC	1 cut(s)	532
CviAII	CATG	2 cut(s)	146, 343
CviJI	RGCY	4 cut(s)	207, 216, 311, 474
CviKI_1	RGCY	4 cut(s)	207, 216, 311, 474
CviQI	GTAC	1 cut(s)	532
DdeI	CTNAG	2 cut(s)	155, 304
DpnI	GATC	2 cut(s)	264, 278
DpnII	GATC	2 cut(s)	262, 276
Eam1104I	CTCTTC	2 cut(s)	32, 41
EarI	CTCTTC	2 cut(s)	32, 41
EcoT22I	ATGCAT	1 cut(s)	6
Esp3I	CGTCTC	1 cut(s)	510
FaeI	CATG	2 cut(s)	149, 346
FaiI	YATR	9 cut(s)	6, 11, 147, 338, 344, 372, 477, 489, 543
FatI	CATG	2 cut(s)	145, 342
Fnu4HI	GCNGC	2 cut(s)	205, 312
Fsp4HI	GCNGC	2 cut(s)	205, 312
GlaI	GCGC	3 cut(s)	193, 195, 246
GluI	GCNGC	2 cut(s)	205, 312
GsuI	CTGGAG	1 cut(s)	196
HapII	CCGG	1 cut(s)	450
HgaI	GACGC	1 cut(s)	527
HhaI	GCGC	3 cut(s)	194, 196, 247
Hin1I	GRCGYC	1 cut(s)	519
Hin1II	CATG	2 cut(s)	149, 346
Hin6I	GCGC	3 cut(s)	192, 194, 245
HinP1I	GCGC	3 cut(s)	192, 194, 245
HinfI	GANTC	1 cut(s)	403
HpaII	CCGG	1 cut(s)	450
Hpy188I	TCNGA	2 cut(s)	182, 284
Hpy188III	TCNNGA	2 cut(s)	343, 558
HpyCH4III	ACNGT	1 cut(s)	493
HpyCH4V	TGCA	3 cut(s)	4, 314, 329
HpyF10VI	GCNNNNNNNGC	1 cut(s)	213
HpyF3I	CTNAG	2 cut(s)	155, 304
Hsp92I	GRCGYC	1 cut(s)	519
Hsp92II	CATG	2 cut(s)	149, 346
HspAI	GCGC	3 cut(s)	192, 194, 245
Kzo9I	GATC	2 cut(s)	262, 276
LpnPI	CCDG	7 cut(s)	70, 226, 305, 409, 420, 463, 498
Lsp1109I	GCAGC	2 cut(s)	216, 298
LweI	GCATC	5 cut(s)	136, 232, 393, 420, 493
MaeIII	GTNAC	1 cut(s)	546
MalI	GATC	2 cut(s)	264, 278
MboI	GATC	2 cut(s)	262, 276
MboII	GAAGA	9 cut(s)	14, 19, 28, 52, 85, 128, 131, 133, 286
MflI	RGATCY	1 cut(s)	262
MhlI	GDGCHC	1 cut(s)	292
MluCI	AATT	3 cut(s)	42, 89, 183
MmeI	TCCRAC	1 cut(s)	421
MnlI	CCTC	5 cut(s)	25, 218, 355, 393, 437
Mph1103I	ATGCAT	1 cut(s)	6
MslI	CAYNNNNRTG	1 cut(s)	230
MspI	CCGG	1 cut(s)	450
Mva1269I	GAATGC	1 cut(s)	390
MvnI	CGCG	1 cut(s)	194
MwoI	GCNNNNNNNGC	1 cut(s)	213
NdeII	GATC	2 cut(s)	262, 276
NlaIII	CATG	2 cut(s)	149, 346
NlaIV	GGNNCC	2 cut(s)	223, 448
NmuCI	GTSAC	1 cut(s)	546
NsiI	ATGCAT	1 cut(s)	6
PagI	TCATGA	1 cut(s)	342
PalAI	GGCGCGCC	1 cut(s)	192
PauI	GCGCGC	1 cut(s)	192
PcsI	WCGNNNNNNNCGW	1 cut(s)	466
PctI	GAATGC	1 cut(s)	390
PfeI	GAWTC	1 cut(s)	403
PkrI	GCNGC	2 cut(s)	206, 313
PspN4I	GGNNCC	2 cut(s)	223, 448
PstNI	CAGNNNCTG	1 cut(s)	311
PsuI	RGATCY	1 cut(s)	262
PteI	GCGCGC	1 cut(s)	192
RsaI	GTAC	1 cut(s)	533
RsaNI	GTAC	1 cut(s)	532
RseI	CAYNNNNRTG	1 cut(s)	230
SatI	GCNGC	2 cut(s)	205, 312
Sau3AI	GATC	2 cut(s)	262, 276
SduI	GDGCHC	1 cut(s)	292
SetI	ASST	3 cut(s)	56, 218, 230
SfaNI	GCATC	5 cut(s)	136, 232, 393, 420, 493
SgsI	GGCGCGCC	1 cut(s)	192
SmiMI	CAYNNNNRTG	1 cut(s)	230
Sse9I	AATT	3 cut(s)	42, 89, 183
TaaI	ACNGT	1 cut(s)	493
TaqI	TCGA	1 cut(s)	272
TasI	AATT	3 cut(s)	42, 89, 183
TatI	WGTACW	1 cut(s)	531
TfiI	GAWTC	1 cut(s)	403
TscAI	CASTG	4 cut(s)	256, 312, 336, 414
TseFI	GTSAC	1 cut(s)	546
TseI	GCWGC	2 cut(s)	204, 311
Tsp45I	GTSAC	1 cut(s)	546
TspDTI	ATGAA	2 cut(s)	19, 428
TspRI	CASTG	4 cut(s)	256, 312, 336, 414
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.