Rmu_sc0005424.1_g000018

Belongs to the eIF-2B alpha beta delta subunits family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005424.1
OG0000605
Physical Location & Seq
Reverse (-)
94416 .. 97062
2647 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005424.1_g000018.1.cds

Sequence Viewer

Length: 972 bp
atggcggaagttcaagctctcgtcaatgaactcgccaccaagctccggaaacggaaggtggagggttcacgagagactgctcggctgacggcggagttgttacggacggtaatatcccagcagagggtgacttcagccgcccttgttgaggtcgtcagagatgttggtcagcagcttattgctgctaaccctgttgagcttgctgttgggaacattgtgaggcgcgtgctgcgcatcattagggatggggatctttcaccggaagttggaggattgactttagtctcccagggtgatgatggagatattgttgaggaagatgataaaccatttctattatctgatgctatttcccaaacaattctccatccaccttccttggttgcacagcttgaaaggaaacccaacttggtttgccactttgagggaaaaggcaatgaggtgatactaaccttaggtcactcgaggactgtcaagaagttcctctatgctgcaaaggagaagaaaagatctttccaggtctatgtggccgagggtgctcctaagcatttggggcatgtgcttgcaaacgagttaactgaaaagcatttgcaaacaaccgtcatccctgactcttcagtgtttgccatgatttcaagagttaacatggtcatagtcggggttcatgctgtgatggccaatggtggggtcatagcccctgttgggatgaatatggttgcacttgctgcaaaaaggcatgctgttccatttgttgtggtcggtggcactcataagttatgtccactgtttcctaacaatccagaggttttgctgaacgatatgagatgtccatctgagctattatcttttggggacttctcagattgcatggattttagtgttggcagtggagctcctcttttgcatgttgttaatcctgcatttgactatgtgccacccgagctagtcagtctttttgttactgaaacgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 map03013
Pfam Domains
Protein Families
IF-2B

Protein Analysis

323

Amino Acids

35.0

Weight (kDa)

6.21

Isoelectric Point (pI)

41.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000605)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07300 AT3G07300 AT3G07300
fragaria_vesca FvH4_1g26370 FvH4_4g04150 FvH4_7g02780 FvH4_7g02780 FvH4_7g02780 FvH4_7g02780
malus_domestica MD02G1290200.v1.1 MD07G1036800.v1.1 MD13G1218100.v1.1 MD13G1218200.v1.1
prunus_persica Prupe.1G044800_v2.0.a1 Prupe.2G032300_v2.0.a1 Prupe.2G032300_v2.0.a1 Prupe.2G032300_v2.0.a1
pyrus_communis pycom07g02550
rosa_chinensis RchiOBHm_Chr1g0313651 RchiOBHm_Chr1g0322021 RchiOBHm_Chr1g0322871 RchiOBHm_Chr1g0322881 RchiOBHm_Chr1g0378031 RchiOBHm_Chr2g0146721 RchiOBHm_Chr4g0394571 RchiOBHm_Chr4g0444661
rosa_laevigata RLG00000009689 RLG00000014710 RLG00000020215 RLG00000028674 RLG00000030393
rosa_multiflora Rmu_sc0001168.1_g000008 Rmu_sc0001168.1_g000019 Rmu_sc0001986.1_g000042 Rmu_sc0005424.1_g000018
rosa_roxburghii Rroxscaffold_1G00066950 Rroxscaffold_4G00308160 Rroxscaffold_4G00327340 Rroxscaffold_4G00331500 Rroxscaffold_5G00339610 Rroxscaffold_5G00370190 Rroxscaffold_6G00400520 Rroxscaffold_7G00188200
rosa_rugosa Rorug01G0035100 Rorug01G0035200 Rorug01G0131800.1 Rorug01G0193700 Rorug03G0291700 Rorug03G0291800 Rorug03G0291800 Rorug03G0291900 Rorug03G0364400.1 Rorug04G0439300 Rorug04G0439400 Rorug05G0543000 Rorug07G0306800
rosa_samantha Rh1AG048400 Rh1AG309400 Rh1AG358100 Rh1AG424800 Rh1BG046200 Rh1CG052500 Rh1DG056700 Rh2AG452600 Rh2BG465300 Rh2CG439500 Rh2DG245700 Rh2DG245800 Rh2DG474300 Rh4AG053000 Rh4BG050900 Rh4CG057700 Rh4DG049700 Rh5BG052500 Rh5DG543800 Rh6DG164300 Rh7AG422900 Rh7BG328900
rosa_wichuraiana Rw1G004380 Rw4G004270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 233
AccII CGCG 1 cut(s) 225
AccIII TCCGGA 1 cut(s) 45
AciI CCGC 3 cut(s) 5, 92, 138
AclWI GGATC 1 cut(s) 258
AcoI YGGCCR 2 cut(s) 528, 675
AcuI CTGAAG 2 cut(s) 117, 600
AfiI CCNNNNNNNGG 8 cut(s) 45, 123, 124, 148, 266, 424, 684, 702
AgsI TTSAA 3 cut(s) 14, 395, 636
AjnI CCWGG 2 cut(s) 288, 516
AjuI GAANNNNNNNTTGG 2 cut(s) 392, 424
AluBI AGCT 8 cut(s) 17, 43, 175, 199, 391, 838, 893, 943
AluI AGCT 8 cut(s) 17, 43, 175, 199, 391, 838, 893, 943
Alw21I GWGCWC 2 cut(s) 541, 895
Alw26I GTCTC 2 cut(s) 68, 289
AlwI GGATC 1 cut(s) 258
Ama87I CYCGRG 2 cut(s) 463, 938
Aor13HI TCCGGA 1 cut(s) 45
AoxI GGCC 2 cut(s) 528, 675
ApeKI GCWGC 5 cut(s) 172, 182, 229, 491, 725
AspLEI GCGC 2 cut(s) 225, 234
AsuHPI GGTGA 4 cut(s) 139, 249, 305, 454
AvaI CYCGRG 2 cut(s) 463, 938
AxyI CCTNAGG 1 cut(s) 454
BalI TGGCCA 1 cut(s) 677
BanII GRGCYC 1 cut(s) 895
BauI CACGAG 1 cut(s) 69
Bbv12I GWGCWC 2 cut(s) 541, 895
BbvI GCAGC 5 cut(s) 169, 184, 216, 478, 712
BccI CCATC 5 cut(s) 239, 293, 375, 667, 838
BceAI ACGGC 1 cut(s) 105
BciT130I CCWGG 2 cut(s) 290, 518
BcoDI GTCTC 2 cut(s) 68, 289
BfaI CTAG 1 cut(s) 944
BglII AGATCT 1 cut(s) 509
BisI GCNGC 6 cut(s) 138, 173, 183, 230, 492, 726
BlsI GCNGC 6 cut(s) 139, 174, 184, 231, 493, 727
Bme1390I CCNGG 2 cut(s) 290, 518
BmeT110I CYCGRG 2 cut(s) 463, 938
BmrFI CCNGG 2 cut(s) 290, 518
BmsI GCATC 2 cut(s) 243, 334
BoxI GACNNNNGTC 1 cut(s) 281
Bpu10I CCTNAGC 1 cut(s) 543
BsaBI GATNNNNATC 2 cut(s) 249, 829
BsaJI CCNNGG 4 cut(s) 288, 289, 378, 531
BsaWI WCCGGW 2 cut(s) 45, 259
BsaXI ACNNNNNCTCC 2 cut(s) 294, 324
Bsc4I CCNNNNNNNGG 8 cut(s) 45, 123, 124, 148, 266, 424, 684, 702
Bse21I CCTNAGG 1 cut(s) 454
Bse3DI GCAATG 1 cut(s) 442
Bse8I GATNNNNATC 2 cut(s) 249, 829
BseAI TCCGGA 1 cut(s) 45
BseBI CCWGG 2 cut(s) 290, 518
BseDI CCNNGG 4 cut(s) 288, 289, 378, 531
BseGI GGATG 4 cut(s) 250, 367, 603, 711
BseJI GATNNNNATC 2 cut(s) 249, 829
BseLI CCNNNNNNNGG 8 cut(s) 45, 123, 124, 148, 266, 424, 684, 702
BseMI GCAATG 1 cut(s) 442
BseMII CTCAG 2 cut(s) 825, 873
BseRI GAGGAG 1 cut(s) 885
BseXI GCAGC 5 cut(s) 169, 184, 216, 478, 712
BseYI CCCAGC 1 cut(s) 117
Bsh1236I CGCG 1 cut(s) 225
BshFI GGCC 2 cut(s) 530, 677
BsiHKAI GWGCWC 2 cut(s) 541, 895
BsiHKCI CYCGRG 2 cut(s) 463, 938
BsiSI CCGG 2 cut(s) 46, 260
BslFI GGGAC 1 cut(s) 866
BslI CCNNNNNNNGG 8 cut(s) 45, 123, 124, 148, 266, 424, 684, 702
BsmAI GTCTC 2 cut(s) 68, 289
BsmFI GGGAC 1 cut(s) 866
BsnI GGCC 2 cut(s) 530, 677
BsoBI CYCGRG 2 cut(s) 463, 938
Bsp1286I GDGCHC 2 cut(s) 541, 895
Bsp13I TCCGGA 1 cut(s) 45
Bsp143I GATC 2 cut(s) 250, 509
BspACI CCGC 3 cut(s) 5, 92, 138
BspANI GGCC 2 cut(s) 530, 677
BspCNI CTCAG 2 cut(s) 826, 872
BspEI TCCGGA 1 cut(s) 45
BspFNI CGCG 1 cut(s) 225
BspPI GGATC 1 cut(s) 258
BsrDI GCAATG 1 cut(s) 442
BssECI CCNNGG 4 cut(s) 288, 289, 378, 531
BssMI GATC 2 cut(s) 250, 509
BssSI CACGAG 1 cut(s) 69
BssT1I CCWWGG 1 cut(s) 378
Bst2BI CACGAG 1 cut(s) 69
Bst2UI CCWGG 2 cut(s) 290, 518
Bst4CI ACNGT 4 cut(s) 109, 472, 601, 786
Bst6I CTCTTC 1 cut(s) 619
BstAPI GCANNNNNTGC 1 cut(s) 725
BstC8I GCNNGC 4 cut(s) 201, 227, 564, 738
BstDEI CTNAG 4 cut(s) 454, 543, 834, 859
BstENI CCTNNNNNAGG 1 cut(s) 146
BstF5I GGATG 4 cut(s) 250, 367, 603, 711
BstFNI CGCG 1 cut(s) 225
BstHHI GCGC 2 cut(s) 225, 234
BstKTI GATC 2 cut(s) 253, 512
BstMAI GTCTC 2 cut(s) 68, 289
BstMBI GATC 2 cut(s) 250, 509
BstMWI GCNNNNNNNGC 7 cut(s) 229, 231, 536, 553, 674, 725, 940
BstNI CCWGG 2 cut(s) 290, 518
BstNSI RCATGY 3 cut(s) 560, 740, 908
BstPAI GACNNNNGTC 1 cut(s) 281
BstSCI CCNGG 2 cut(s) 288, 516
BstUI CGCG 1 cut(s) 225
BstV1I GCAGC 5 cut(s) 169, 184, 216, 478, 712
BstX2I RGATCY 2 cut(s) 250, 509
BstYI RGATCY 2 cut(s) 250, 509
Bsu36I CCTNAGG 1 cut(s) 454
BsuRI GGCC 2 cut(s) 530, 677
BtsCI GGATG 4 cut(s) 250, 367, 603, 711
BtsI GCAGTG 1 cut(s) 892
BtsIMutI CAGTG 3 cut(s) 624, 782, 892
Cac8I GCNNGC 4 cut(s) 201, 227, 564, 738
CfoI GCGC 2 cut(s) 225, 234
CspCI CAANNNNNGTGG 2 cut(s) 360, 395
CviAII CATG 7 cut(s) 557, 628, 646, 665, 737, 868, 905
DdeI CTNAG 4 cut(s) 454, 543, 834, 859
DpnI GATC 2 cut(s) 252, 511
DpnII GATC 2 cut(s) 250, 509
EaeI YGGCCR 2 cut(s) 528, 675
Eam1104I CTCTTC 1 cut(s) 619
EarI CTCTTC 1 cut(s) 619
EciI GGCGGA 2 cut(s) 20, 107
Ecl136II GAGCTC 1 cut(s) 893
Eco130I CCWWGG 1 cut(s) 378
Eco24I GRGCYC 1 cut(s) 895
Eco53kI GAGCTC 1 cut(s) 893
Eco57I CTGAAG 2 cut(s) 117, 600
Eco81I CCTNAGG 1 cut(s) 454
Eco88I CYCGRG 2 cut(s) 463, 938
EcoICRI GAGCTC 1 cut(s) 893
EcoNI CCTNNNNNAGG 1 cut(s) 146
EcoRII CCWGG 2 cut(s) 288, 516
EcoT14I CCWWGG 1 cut(s) 378
EcoT38I GRGCYC 1 cut(s) 895
ErhI CCWWGG 1 cut(s) 378
FaeI CATG 7 cut(s) 560, 631, 649, 668, 740, 871, 908
FaqI GGGAC 1 cut(s) 866
FatI CATG 7 cut(s) 556, 627, 645, 664, 736, 867, 904
Fnu4HI GCNGC 6 cut(s) 138, 173, 183, 230, 492, 726
FokI GGATG 4 cut(s) 257, 354, 590, 718
FriOI GRGCYC 1 cut(s) 895
Fsp4HI GCNGC 6 cut(s) 138, 173, 183, 230, 492, 726
FspBI CTAG 1 cut(s) 944
FspI TGCGCA 1 cut(s) 233
GlaI GCGC 2 cut(s) 224, 233
GluI GCNGC 6 cut(s) 138, 173, 183, 230, 492, 726
GsaI CCCAGC 1 cut(s) 121
HaeIII GGCC 2 cut(s) 530, 677
HapII CCGG 2 cut(s) 46, 260
HhaI GCGC 2 cut(s) 225, 234
Hin1II CATG 7 cut(s) 560, 631, 649, 668, 740, 871, 908
Hin6I GCGC 2 cut(s) 223, 232
HinP1I GCGC 2 cut(s) 223, 232
HincII GTYRAC 2 cut(s) 576, 643
HindII GTYRAC 2 cut(s) 576, 643
HinfI GANTC 1 cut(s) 611
HpaI GTTAAC 2 cut(s) 576, 643
HpaII CCGG 2 cut(s) 46, 260
HphI GGTGA 4 cut(s) 139, 249, 305, 454
Hpy166II GTNNAC 4 cut(s) 68, 576, 643, 782
Hpy188I TCNGA 4 cut(s) 158, 343, 835, 862
Hpy188III TCNNGA 5 cut(s) 46, 69, 475, 636, 800
Hpy8I GTNNAC 4 cut(s) 68, 576, 643, 782
HpyAV CCTTC 2 cut(s) 49, 384
HpyCH4III ACNGT 4 cut(s) 109, 472, 601, 786
HpyCH4IV ACGT 1 cut(s) 968
HpyCH4V TGCA 9 cut(s) 386, 494, 566, 592, 719, 728, 867, 904, 920
HpyF10VI GCNNNNNNNGC 7 cut(s) 229, 231, 536, 553, 674, 725, 940
HpyF3I CTNAG 4 cut(s) 454, 543, 834, 859
HpySE526I ACGT 1 cut(s) 968
Hsp92II CATG 7 cut(s) 560, 631, 649, 668, 740, 871, 908
HspAI GCGC 2 cut(s) 223, 232
Kpn2I TCCGGA 1 cut(s) 45
KspAI GTTAAC 2 cut(s) 576, 643
Kzo9I GATC 2 cut(s) 250, 509
LmnI GCTCC 4 cut(s) 48, 544, 890, 898
Lsp1109I GCAGC 5 cut(s) 169, 184, 216, 478, 712
LweI GCATC 2 cut(s) 243, 334
MaeI CTAG 1 cut(s) 944
MaeII ACGT 1 cut(s) 968
MaeIII GTNAC 4 cut(s) 99, 127, 458, 958
MalI GATC 2 cut(s) 252, 511
MboI GATC 2 cut(s) 250, 509
MboII GAAGA 3 cut(s) 329, 514, 606
MflI RGATCY 2 cut(s) 250, 509
MhlI GDGCHC 2 cut(s) 541, 895
MlsI TGGCCA 1 cut(s) 677
MluCI AATT 1 cut(s) 360
MluNI TGGCCA 1 cut(s) 677
MlyI GAGTC 1 cut(s) 605
MmeI TCCRAC 1 cut(s) 247
Mox20I TGGCCA 1 cut(s) 677
MroI TCCGGA 1 cut(s) 45
MscI TGGCCA 1 cut(s) 677
MseI TTAA 3 cut(s) 575, 642, 912
Msp20I TGGCCA 1 cut(s) 677
MspI CCGG 2 cut(s) 46, 260
MspR9I CCNGG 2 cut(s) 290, 518
MvaI CCWGG 2 cut(s) 290, 518
MvnI CGCG 1 cut(s) 225
MwoI GCNNNNNNNGC 7 cut(s) 229, 231, 536, 553, 674, 725, 940
NdeII GATC 2 cut(s) 250, 509
NlaIII CATG 7 cut(s) 560, 631, 649, 668, 740, 871, 908
NmeAIII GCCGAG 2 cut(s) 61, 556
NmuCI GTSAC 2 cut(s) 127, 458
NsbI TGCGCA 1 cut(s) 233
NspI RCATGY 3 cut(s) 560, 740, 908
PaeI GCATGC 1 cut(s) 740
PaeR7I CTCGAG 1 cut(s) 463
PasI CCCWGGG 1 cut(s) 289
PkrI GCNGC 6 cut(s) 139, 174, 184, 231, 493, 727
PleI GAGTC 1 cut(s) 605
PpsI GAGTC 1 cut(s) 605
PshAI GACNNNNGTC 1 cut(s) 281
Psp124BI GAGCTC 1 cut(s) 895
Psp6I CCWGG 2 cut(s) 288, 516
PspFI CCCAGC 1 cut(s) 117
PspGI CCWGG 2 cut(s) 288, 516
PspXI VCTCGAGB 1 cut(s) 463
PsuI RGATCY 2 cut(s) 250, 509
SacI GAGCTC 1 cut(s) 895
SaqAI TTAA 3 cut(s) 575, 642, 912
SatI GCNGC 6 cut(s) 138, 173, 183, 230, 492, 726
Sau3AI GATC 2 cut(s) 250, 509
SchI GAGTC 1 cut(s) 605
ScrFI CCNGG 2 cut(s) 290, 518
SduI GDGCHC 2 cut(s) 541, 895
SfaNI GCATC 2 cut(s) 243, 334
Sfr274I CTCGAG 1 cut(s) 463
SlaI CTCGAG 1 cut(s) 463
SmlI CTYRAG 1 cut(s) 463
SmoI CTYRAG 1 cut(s) 463
SphI GCATGC 1 cut(s) 740
Sse9I AATT 1 cut(s) 360
SsiI CCGC 3 cut(s) 5, 92, 138
SspMI CTAG 1 cut(s) 944
SstI GAGCTC 1 cut(s) 895
StyD4I CCNGG 2 cut(s) 288, 516
StyI CCWWGG 1 cut(s) 378
TaaI ACNGT 4 cut(s) 109, 472, 601, 786
TaiI ACGT 1 cut(s) 971
TaqI TCGA 1 cut(s) 464
TasI AATT 1 cut(s) 360
TauI GCSGC 1 cut(s) 140
Tru1I TTAA 3 cut(s) 575, 642, 912
Tru9I TTAA 3 cut(s) 575, 642, 912
TscAI CASTG 3 cut(s) 624, 789, 892
TseFI GTSAC 2 cut(s) 127, 458
TseI GCWGC 5 cut(s) 172, 182, 229, 491, 725
Tsp45I GTSAC 2 cut(s) 127, 458
TspDTI ATGAA 3 cut(s) 42, 653, 722
TspGWI ACGGA 2 cut(s) 67, 118
TspRI CASTG 3 cut(s) 624, 789, 892
XagI CCTNNNNNAGG 1 cut(s) 146
XceI RCATGY 3 cut(s) 560, 740, 908
XcmI CCANNNNNNNNNTGG 1 cut(s) 296
XhoI CTCGAG 1 cut(s) 463
XspI CTAG 1 cut(s) 944
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.