Rh2DG245800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000605
Physical Location & Seq
Reverse (-)
25119726 .. 25121133
1408 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG245800.1

Sequence Viewer

Length: 279 bp
ATGATTCAGTGCTCTCCGCTCGGTAAGAACAACTGGAAAGGGGATTTTGTTCACAACCGAGAGCAGGTCGATTCAAGCATTAGCCTTGGTTATGCTAAGGCAAGTGAGGTTATATTAACTCCAGGCAGTTCAAAAACAGTACAGGAATTCCTTTTTGCTGCAAAGGAGAAAAAAAAGATCATTTCGGGTATTTGTTGCAGAGGGAGCTCCAAGGTATCAGGGGCATCTTCTTGCAAAAGAATTGGCTGGAAGAGGTTTACAAACAACGCTGATTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

92

Amino Acids

10.09

Weight (kDa)

9.61

Isoelectric Point (pI)

35.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000605)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07300 AT3G07300 AT3G07300
fragaria_vesca FvH4_1g26370 FvH4_4g04150 FvH4_7g02780 FvH4_7g02780 FvH4_7g02780 FvH4_7g02780
malus_domestica MD02G1290200.v1.1 MD07G1036800.v1.1 MD13G1218100.v1.1 MD13G1218200.v1.1
prunus_persica Prupe.1G044800_v2.0.a1 Prupe.2G032300_v2.0.a1 Prupe.2G032300_v2.0.a1 Prupe.2G032300_v2.0.a1
pyrus_communis pycom07g02550
rosa_chinensis RchiOBHm_Chr1g0313651 RchiOBHm_Chr1g0322021 RchiOBHm_Chr1g0322871 RchiOBHm_Chr1g0322881 RchiOBHm_Chr1g0378031 RchiOBHm_Chr2g0146721 RchiOBHm_Chr4g0394571 RchiOBHm_Chr4g0444661
rosa_laevigata RLG00000009689 RLG00000014710 RLG00000020215 RLG00000028674 RLG00000030393
rosa_multiflora Rmu_sc0001168.1_g000008 Rmu_sc0001168.1_g000019 Rmu_sc0001986.1_g000042 Rmu_sc0005424.1_g000018
rosa_roxburghii Rroxscaffold_1G00066950 Rroxscaffold_4G00308160 Rroxscaffold_4G00327340 Rroxscaffold_4G00331500 Rroxscaffold_5G00339610 Rroxscaffold_5G00370190 Rroxscaffold_6G00400520 Rroxscaffold_7G00188200
rosa_rugosa Rorug01G0035100 Rorug01G0035200 Rorug01G0131800.1 Rorug01G0193700 Rorug03G0291700 Rorug03G0291800 Rorug03G0291800 Rorug03G0291900 Rorug03G0364400.1 Rorug04G0439300 Rorug04G0439400 Rorug05G0543000 Rorug07G0306800
rosa_samantha Rh1AG048400 Rh1AG309400 Rh1AG358100 Rh1AG424800 Rh1BG046200 Rh1CG052500 Rh1DG056700 Rh2AG452600 Rh2BG465300 Rh2CG439500 Rh2DG245700 Rh2DG245800 Rh2DG474300 Rh4AG053000 Rh4BG050900 Rh4CG057700 Rh4DG049700 Rh5BG052500 Rh5DG543800 Rh6DG164300 Rh7AG422900 Rh7BG328900
rosa_wichuraiana Rw1G004380 Rw4G004270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 55
AccBSI CCGCTC 1 cut(s) 19
AciI CCGC 1 cut(s) 17
AcsI RAATTY 1 cut(s) 146
AfaI GTAC 1 cut(s) 141
AfiI CCNNNNNNNGG 1 cut(s) 64
AgsI TTSAA 2 cut(s) 75, 132
AjnI CCWGG 1 cut(s) 121
AluBI AGCT 1 cut(s) 207
AluI AGCT 1 cut(s) 207
Alw21I GWGCWC 2 cut(s) 14, 209
ApeKI GCWGC 1 cut(s) 158
ApoI RAATTY 1 cut(s) 146
BanII GRGCYC 1 cut(s) 209
Bbv12I GWGCWC 2 cut(s) 14, 209
BbvI GCAGC 1 cut(s) 145
BciT130I CCWGG 1 cut(s) 123
BfuAI ACCTGC 1 cut(s) 55
BisI GCNGC 1 cut(s) 159
BlsI GCNGC 1 cut(s) 160
Bme1390I CCNGG 1 cut(s) 123
BmrFI CCNGG 1 cut(s) 123
BmsI GCATC 1 cut(s) 233
BpmI CTGGAG 1 cut(s) 105
Bpu10I CCTNAGC 1 cut(s) 96
BsaJI CCNNGG 2 cut(s) 85, 210
Bsc4I CCNNNNNNNGG 1 cut(s) 64
Bse1I ACTGG 1 cut(s) 38
BseBI CCWGG 1 cut(s) 123
BseDI CCNNGG 2 cut(s) 85, 210
BseLI CCNNNNNNNGG 1 cut(s) 64
BseNI ACTGG 1 cut(s) 38
BseXI GCAGC 1 cut(s) 145
BsiHKAI GWGCWC 2 cut(s) 14, 209
BslI CCNNNNNNNGG 1 cut(s) 64
Bsp1286I GDGCHC 2 cut(s) 14, 209
Bsp143I GATC 1 cut(s) 177
BspACI CCGC 1 cut(s) 17
BspMI ACCTGC 1 cut(s) 55
BsrBI CCGCTC 1 cut(s) 19
BsrI ACTGG 1 cut(s) 38
BssECI CCNNGG 2 cut(s) 85, 210
BssMI GATC 1 cut(s) 177
BssT1I CCWWGG 2 cut(s) 85, 210
Bst2UI CCWGG 1 cut(s) 123
Bst4CI ACNGT 1 cut(s) 139
Bst6I CTCTTC 1 cut(s) 245
BstDEI CTNAG 1 cut(s) 96
BstKTI GATC 1 cut(s) 180
BstMBI GATC 1 cut(s) 177
BstMWI GCNNNNNNNGC 1 cut(s) 204
BstNI CCWGG 1 cut(s) 123
BstSCI CCNGG 1 cut(s) 121
BstV1I GCAGC 1 cut(s) 145
BtsIMutI CAGTG 1 cut(s) 14
BveI ACCTGC 1 cut(s) 55
Csp6I GTAC 1 cut(s) 140
CviJI RGCY 3 cut(s) 84, 207, 246
CviKI_1 RGCY 3 cut(s) 84, 207, 246
CviQI GTAC 1 cut(s) 140
DdeI CTNAG 1 cut(s) 96
DpnI GATC 1 cut(s) 179
DpnII GATC 1 cut(s) 177
Eam1104I CTCTTC 1 cut(s) 245
EarI CTCTTC 1 cut(s) 245
Ecl136II GAGCTC 1 cut(s) 207
Eco130I CCWWGG 2 cut(s) 85, 210
Eco24I GRGCYC 1 cut(s) 209
Eco53kI GAGCTC 1 cut(s) 207
EcoICRI GAGCTC 1 cut(s) 207
EcoRI GAATTC 1 cut(s) 146
EcoRII CCWGG 1 cut(s) 121
EcoT14I CCWWGG 2 cut(s) 85, 210
EcoT38I GRGCYC 1 cut(s) 209
ErhI CCWWGG 2 cut(s) 85, 210
FaiI YATR 2 cut(s) 93, 113
Fnu4HI GCNGC 1 cut(s) 159
FriOI GRGCYC 1 cut(s) 209
Fsp4HI GCNGC 1 cut(s) 159
GluI GCNGC 1 cut(s) 159
GsuI CTGGAG 1 cut(s) 105
HinfI GANTC 2 cut(s) 4, 71
Hpy166II GTNNAC 2 cut(s) 52, 258
Hpy8I GTNNAC 2 cut(s) 52, 258
HpyCH4III ACNGT 1 cut(s) 139
HpyCH4V TGCA 3 cut(s) 161, 198, 234
HpyF10VI GCNNNNNNNGC 1 cut(s) 204
HpyF3I CTNAG 1 cut(s) 96
Kzo9I GATC 1 cut(s) 177
LmnI GCTCC 2 cut(s) 204, 212
LpnPI CCDG 7 cut(s) 19, 50, 108, 128, 135, 204, 232
Lsp1109I GCAGC 1 cut(s) 145
LweI GCATC 1 cut(s) 233
MalI GATC 1 cut(s) 179
MbiI CCGCTC 1 cut(s) 19
MboI GATC 1 cut(s) 177
MboII GAAGA 2 cut(s) 219, 262
MhlI GDGCHC 2 cut(s) 14, 209
MluCI AATT 2 cut(s) 146, 240
MnlI CCTC 3 cut(s) 100, 194, 246
MseI TTAA 1 cut(s) 116
MspR9I CCNGG 1 cut(s) 123
MvaI CCWGG 1 cut(s) 123
MwoI GCNNNNNNNGC 1 cut(s) 204
NdeII GATC 1 cut(s) 177
PfeI GAWTC 2 cut(s) 4, 71
PkrI GCNGC 1 cut(s) 160
Psp124BI GAGCTC 1 cut(s) 209
Psp6I CCWGG 1 cut(s) 121
PspGI CCWGG 1 cut(s) 121
RsaI GTAC 1 cut(s) 141
RsaNI GTAC 1 cut(s) 140
SacI GAGCTC 1 cut(s) 209
SaqAI TTAA 1 cut(s) 116
SatI GCNGC 1 cut(s) 159
Sau3AI GATC 1 cut(s) 177
ScrFI CCNGG 1 cut(s) 123
SduI GDGCHC 2 cut(s) 14, 209
SetI ASST 5 cut(s) 69, 111, 209, 216, 257
SfaNI GCATC 1 cut(s) 233
Sse9I AATT 2 cut(s) 146, 240
SsiI CCGC 1 cut(s) 17
SstI GAGCTC 1 cut(s) 209
StyD4I CCNGG 1 cut(s) 121
StyI CCWWGG 2 cut(s) 85, 210
TaaI ACNGT 1 cut(s) 139
TaqI TCGA 1 cut(s) 69
TasI AATT 2 cut(s) 146, 240
TatI WGTACW 1 cut(s) 139
TfiI GAWTC 2 cut(s) 4, 71
Tru1I TTAA 1 cut(s) 116
Tru9I TTAA 1 cut(s) 116
TscAI CASTG 1 cut(s) 14
TseI GCWGC 1 cut(s) 158
TspRI CASTG 1 cut(s) 14
XapI RAATTY 1 cut(s) 146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.