Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000605

Physical Location & Seq

Genomic Coordinates Forward (+)

65450540 .. 65456494

Gene Structure 5955 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00331500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGCTGCACCACCAGATCTTCCAAAACCAGTGCACAATCGCCACCCTCTTCAAAACCACCCAAAGTCTAAGCAAAGCAAATTCGCTCTGCACGAATGGGGTTTCTTTTAGATCTGAGGATGAACACGCACCTAGGCAGTTCAAAAACAGTACAGGAATTCCTTTTTGCTGCAAAGGAGAAAAAAAAGATCATTTCGGGTATTTGTTGCAGAGGGAGCTCCAAGCTATCAGGGGCATCTTATTGCAAAAAAAATTGGCTGGAAGAGGTTTACAAACAGCGCTGATTACTGATTCTGCAATTTTTGCTATGATATCTCAAGTGATCATGGTTATAGTTGGTGCTCATGCTGTCATGGCCAATGGTGGTGTTATAGCACCTGTTGGGTTGAATATGGTTGCACTTGCAGCCCAAAGGCATGCTGTCCCTTTTGTTGTACTTGCTGGCAGTTACAAGTGGAGGCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005851 GO:0017076 GO:0019001 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032991 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0044424 GO:0044444 GO:0044464 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

IF-2B

Protein Analysis

154

Amino Acids

16.82

Weight (kDa)

9.83

Isoelectric Point (pI)

29.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IF-2B	PF01008	78 - 151	2.4e-19	Initiation factor 2 subunit family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000605)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07300 AT3G07300 AT3G07300
fragaria_vesca	FvH4_1g26370 FvH4_4g04150 FvH4_7g02780 FvH4_7g02780 FvH4_7g02780 FvH4_7g02780
malus_domestica	MD02G1290200.v1.1 MD07G1036800.v1.1 MD13G1218100.v1.1 MD13G1218200.v1.1
prunus_persica	Prupe.1G044800_v2.0.a1 Prupe.2G032300_v2.0.a1 Prupe.2G032300_v2.0.a1 Prupe.2G032300_v2.0.a1
pyrus_communis	pycom07g02550
rosa_chinensis	RchiOBHm_Chr1g0313651 RchiOBHm_Chr1g0322021 RchiOBHm_Chr1g0322871 RchiOBHm_Chr1g0322881 RchiOBHm_Chr1g0378031 RchiOBHm_Chr2g0146721 RchiOBHm_Chr4g0394571 RchiOBHm_Chr4g0444661
rosa_laevigata	RLG00000009689 RLG00000014710 RLG00000020215 RLG00000028674 RLG00000030393
rosa_multiflora	Rmu_sc0001168.1_g000008 Rmu_sc0001168.1_g000019 Rmu_sc0001986.1_g000042 Rmu_sc0005424.1_g000018
rosa_roxburghii	Rroxscaffold_1G00066950 Rroxscaffold_4G00308160 Rroxscaffold_4G00327340 Rroxscaffold_4G00331500 Rroxscaffold_5G00339610 Rroxscaffold_5G00370190 Rroxscaffold_6G00400520 Rroxscaffold_7G00188200
rosa_rugosa	Rorug01G0035100 Rorug01G0035200 Rorug01G0131800.1 Rorug01G0193700 Rorug03G0291700 Rorug03G0291800 Rorug03G0291800 Rorug03G0291900 Rorug03G0364400.1 Rorug04G0439300 Rorug04G0439400 Rorug05G0543000 Rorug07G0306800
rosa_samantha	Rh1AG048400 Rh1AG309400 Rh1AG358100 Rh1AG424800 Rh1BG046200 Rh1CG052500 Rh1DG056700 Rh2AG452600 Rh2BG465300 Rh2CG439500 Rh2DG245700 Rh2DG245800 Rh2DG474300 Rh4AG053000 Rh4BG050900 Rh4CG057700 Rh4DG049700 Rh5BG052500 Rh5DG543800 Rh6DG164300 Rh7AG422900 Rh7BG328900
rosa_wichuraiana	Rw1G004380 Rw4G004270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	354
AcsI	RAATTY	2 cut(s)	79, 156
AfaI	GTAC	2 cut(s)	151, 435
AfeI	AGCGCT	1 cut(s)	279
AgsI	TTSAA	3 cut(s)	52, 142, 388
AluBI	AGCT	2 cut(s)	217, 224
AluI	AGCT	2 cut(s)	217, 224
Alw21I	GWGCWC	3 cut(s)	35, 219, 343
Alw44I	GTGCAC	1 cut(s)	31
Aor51HI	AGCGCT	1 cut(s)	279
AoxI	GGCC	1 cut(s)	354
ApaLI	GTGCAC	1 cut(s)	31
ApeKI	GCWGC	3 cut(s)	4, 168, 404
ApoI	RAATTY	2 cut(s)	79, 156
AspA2I	CCTAGG	1 cut(s)	131
AspLEI	GCGC	1 cut(s)	280
AvrII	CCTAGG	1 cut(s)	131
BaeGI	GKGCMC	1 cut(s)	35
BalI	TGGCCA	1 cut(s)	356
BanII	GRGCYC	1 cut(s)	219
Bbv12I	GWGCWC	3 cut(s)	35, 219, 343
BbvI	GCAGC	2 cut(s)	155, 416
BclI	TGATCA	1 cut(s)	321
BfaI	CTAG	1 cut(s)	132
BfoI	RGCGCY	1 cut(s)	281
BglII	AGATCT	2 cut(s)	15, 110
BisI	GCNGC	3 cut(s)	5, 169, 405
BlnI	CCTAGG	1 cut(s)	131
BlsI	GCNGC	3 cut(s)	6, 170, 406
BmsI	GCATC	1 cut(s)	243
BpuEI	CTTGAG	1 cut(s)	300
BsaJI	CCNNGG	1 cut(s)	131
Bse1I	ACTGG	1 cut(s)	28
BseDI	CCNNGG	1 cut(s)	131
BseGI	GGATG	1 cut(s)	124
BseMII	CTCAG	1 cut(s)	105
BseNI	ACTGG	1 cut(s)	28
BseSI	GKGCMC	1 cut(s)	35
BseXI	GCAGC	2 cut(s)	155, 416
BsgI	GTGCAG	1 cut(s)	73
BshFI	GGCC	1 cut(s)	356
BsiHKAI	GWGCWC	3 cut(s)	35, 219, 343
BslFI	GGGAC	1 cut(s)	407
BsmFI	GGGAC	1 cut(s)	407
BsnI	GGCC	1 cut(s)	356
Bsp1286I	GDGCHC	3 cut(s)	35, 219, 343
Bsp143I	GATC	4 cut(s)	15, 110, 187, 321
BspANI	GGCC	1 cut(s)	356
BspCNI	CTCAG	1 cut(s)	106
BsrI	ACTGG	1 cut(s)	28
BssECI	CCNNGG	1 cut(s)	131
BssMI	GATC	4 cut(s)	15, 110, 187, 321
BssT1I	CCWWGG	1 cut(s)	131
Bst4CI	ACNGT	1 cut(s)	149
Bst6I	CTCTTC	2 cut(s)	53, 256
BstAPI	GCANNNNNTGC	1 cut(s)	302
BstC8I	GCNNGC	2 cut(s)	417, 442
BstDEI	CTNAG	2 cut(s)	68, 114
BstF5I	GGATG	1 cut(s)	124
BstH2I	RGCGCY	1 cut(s)	281
BstHHI	GCGC	1 cut(s)	280
BstKTI	GATC	4 cut(s)	18, 113, 190, 324
BstMBI	GATC	4 cut(s)	15, 110, 187, 321
BstMWI	GCNNNNNNNGC	4 cut(s)	214, 302, 353, 404
BstNSI	RCATGY	1 cut(s)	419
BstSLI	GKGCMC	1 cut(s)	35
BstV1I	GCAGC	2 cut(s)	155, 416
BstX2I	RGATCY	2 cut(s)	15, 110
BstYI	RGATCY	2 cut(s)	15, 110
BsuRI	GGCC	1 cut(s)	356
BtsCI	GGATG	1 cut(s)	124
BtsIMutI	CAGTG	1 cut(s)	35
Cac8I	GCNNGC	2 cut(s)	417, 442
CfoI	GCGC	1 cut(s)	280
Csp6I	GTAC	2 cut(s)	150, 434
CviAII	CATG	4 cut(s)	325, 344, 352, 416
CviJI	RGCY	6 cut(s)	217, 224, 257, 356, 407, 460
CviKI_1	RGCY	6 cut(s)	217, 224, 257, 356, 407, 460
CviQI	GTAC	2 cut(s)	150, 434
DdeI	CTNAG	2 cut(s)	68, 114
DpnI	GATC	4 cut(s)	17, 112, 189, 323
DpnII	GATC	4 cut(s)	15, 110, 187, 321
EaeI	YGGCCR	1 cut(s)	354
Eam1104I	CTCTTC	2 cut(s)	53, 256
EarI	CTCTTC	2 cut(s)	53, 256
Ecl136II	GAGCTC	1 cut(s)	217
Eco130I	CCWWGG	1 cut(s)	131
Eco24I	GRGCYC	1 cut(s)	219
Eco32I	GATATC	1 cut(s)	312
Eco47III	AGCGCT	1 cut(s)	279
Eco53kI	GAGCTC	1 cut(s)	217
EcoICRI	GAGCTC	1 cut(s)	217
EcoRI	GAATTC	1 cut(s)	156
EcoRV	GATATC	1 cut(s)	312
EcoT14I	CCWWGG	1 cut(s)	131
EcoT38I	GRGCYC	1 cut(s)	219
ErhI	CCWWGG	1 cut(s)	131
FaeI	CATG	4 cut(s)	328, 347, 355, 419
FaiI	YATR	9 cut(s)	308, 326, 332, 345, 353, 371, 392, 417, 463
FaqI	GGGAC	1 cut(s)	407
FatI	CATG	4 cut(s)	324, 343, 351, 415
FbaI	TGATCA	1 cut(s)	321
Fnu4HI	GCNGC	3 cut(s)	5, 169, 405
FokI	GGATG	1 cut(s)	131
FriOI	GRGCYC	1 cut(s)	219
Fsp4HI	GCNGC	3 cut(s)	5, 169, 405
FspBI	CTAG	1 cut(s)	132
GlaI	GCGC	1 cut(s)	279
GluI	GCNGC	3 cut(s)	5, 169, 405
HaeII	RGCGCY	1 cut(s)	281
HaeIII	GGCC	1 cut(s)	356
HhaI	GCGC	1 cut(s)	280
Hin1II	CATG	4 cut(s)	328, 347, 355, 419
Hin6I	GCGC	1 cut(s)	278
HinP1I	GCGC	1 cut(s)	278
HinfI	GANTC	1 cut(s)	290
Hpy166II	GTNNAC	2 cut(s)	33, 269
Hpy188I	TCNGA	1 cut(s)	115
Hpy8I	GTNNAC	2 cut(s)	33, 269
HpyCH4III	ACNGT	1 cut(s)	149
HpyCH4V	TGCA	9 cut(s)	7, 33, 90, 171, 208, 244, 296, 398, 404
HpyF10VI	GCNNNNNNNGC	4 cut(s)	214, 302, 353, 404
HpyF3I	CTNAG	2 cut(s)	68, 114
Hsp92II	CATG	4 cut(s)	328, 347, 355, 419
HspAI	GCGC	1 cut(s)	278
Ksp22I	TGATCA	1 cut(s)	321
Kzo9I	GATC	4 cut(s)	15, 110, 187, 321
LmnI	GCTCC	2 cut(s)	214, 222
LpnPI	CCDG	7 cut(s)	26, 41, 138, 214, 243, 390, 426
Lsp1109I	GCAGC	2 cut(s)	155, 416
LweI	GCATC	1 cut(s)	243
MaeI	CTAG	1 cut(s)	132
MaeIII	GTNAC	1 cut(s)	446
MalI	GATC	4 cut(s)	17, 112, 189, 323
MboI	GATC	4 cut(s)	15, 110, 187, 321
MboII	GAAGA	3 cut(s)	10, 40, 273
MflI	RGATCY	2 cut(s)	15, 110
MhlI	GDGCHC	3 cut(s)	35, 219, 343
MlsI	TGGCCA	1 cut(s)	356
MluCI	AATT	4 cut(s)	79, 156, 251, 297
MluNI	TGGCCA	1 cut(s)	356
MnlI	CCTC	5 cut(s)	56, 109, 204, 257, 450
Mox20I	TGGCCA	1 cut(s)	356
MscI	TGGCCA	1 cut(s)	356
Msp20I	TGGCCA	1 cut(s)	356
MwoI	GCNNNNNNNGC	4 cut(s)	214, 302, 353, 404
NdeII	GATC	4 cut(s)	15, 110, 187, 321
NlaIII	CATG	4 cut(s)	328, 347, 355, 419
NspI	RCATGY	1 cut(s)	419
PaeI	GCATGC	1 cut(s)	419
PcsI	WCGNNNNNNNCGW	1 cut(s)	89
PfeI	GAWTC	1 cut(s)	290
PkrI	GCNGC	3 cut(s)	6, 170, 406
Psp124BI	GAGCTC	1 cut(s)	219
PsuI	RGATCY	2 cut(s)	15, 110
RsaI	GTAC	2 cut(s)	151, 435
RsaNI	GTAC	2 cut(s)	150, 434
SacI	GAGCTC	1 cut(s)	219
SatI	GCNGC	3 cut(s)	5, 169, 405
Sau3AI	GATC	4 cut(s)	15, 110, 187, 321
SduI	GDGCHC	3 cut(s)	35, 219, 343
SetI	ASST	5 cut(s)	133, 219, 226, 268, 379
SfaNI	GCATC	1 cut(s)	243
SmlI	CTYRAG	1 cut(s)	315
SmoI	CTYRAG	1 cut(s)	315
SphI	GCATGC	1 cut(s)	419
Sse9I	AATT	4 cut(s)	79, 156, 251, 297
SspMI	CTAG	1 cut(s)	132
SstI	GAGCTC	1 cut(s)	219
StyI	CCWWGG	1 cut(s)	131
TaaI	ACNGT	1 cut(s)	149
TasI	AATT	4 cut(s)	79, 156, 251, 297
TatI	WGTACW	2 cut(s)	149, 433
TfiI	GAWTC	1 cut(s)	290
TscAI	CASTG	1 cut(s)	35
TseI	GCWGC	3 cut(s)	4, 168, 404
TspDTI	ATGAA	1 cut(s)	135
TspRI	CASTG	1 cut(s)	35
VneI	GTGCAC	1 cut(s)	31
XapI	RAATTY	2 cut(s)	79, 156
XceI	RCATGY	1 cut(s)	419
XmaJI	CCTAGG	1 cut(s)	131
XspI	CTAG	1 cut(s)	132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.