Rh7BG328900

Belongs to the eIF-2B alpha beta delta subunits family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
Physical Location & Seq
Reverse (-)
33994294 .. 33997369
3076 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG328900.1

Sequence Viewer

Length: 342 bp
ATGGCAAATGGGAAAGAGATGAGTTCCAGTGAATTTGACAATTCCACATATGAAGACTGTGGAGAGGTGAAAATTGAGTGTTACATGCCAGACGTGCATACTCTCGTGAATTATTTCATTATCAAGCTGAAAAAGCGGTATACGTCTGAGTTACTTCGCTCGGTGATTTTGTCGCAACGTGTGCCCTACACGAATCAAGCTGGAGCATTGATTGATGCTGTAAAGGCTGTTGGGGAGCAGCTGATTGCTGCAAATCCTGTGGATGAACCTGCAAAACAAGTGAAGAGCGCAATTCCGTTAAAGGACAGTAGCAAGTCTCATGTAGCTTTCAAGTCCATGTAA

Protein Analysis

113

Amino Acids

12.53

Weight (kDa)

6.72

Isoelectric Point (pI)

46.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000605)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07300 AT3G07300 AT3G07300
fragaria_vesca FvH4_1g26370 FvH4_4g04150 FvH4_7g02780 FvH4_7g02780 FvH4_7g02780 FvH4_7g02780
malus_domestica MD02G1290200.v1.1 MD07G1036800.v1.1 MD13G1218100.v1.1 MD13G1218200.v1.1
prunus_persica Prupe.1G044800_v2.0.a1 Prupe.2G032300_v2.0.a1 Prupe.2G032300_v2.0.a1 Prupe.2G032300_v2.0.a1
pyrus_communis pycom07g02550
rosa_chinensis RchiOBHm_Chr1g0313651 RchiOBHm_Chr1g0322021 RchiOBHm_Chr1g0322871 RchiOBHm_Chr1g0322881 RchiOBHm_Chr1g0378031 RchiOBHm_Chr2g0146721 RchiOBHm_Chr4g0394571 RchiOBHm_Chr4g0444661
rosa_laevigata RLG00000009689 RLG00000014710 RLG00000020215 RLG00000028674 RLG00000030393
rosa_multiflora Rmu_sc0001168.1_g000008 Rmu_sc0001168.1_g000019 Rmu_sc0001986.1_g000042 Rmu_sc0005424.1_g000018
rosa_roxburghii Rroxscaffold_1G00066950 Rroxscaffold_4G00308160 Rroxscaffold_4G00327340 Rroxscaffold_4G00331500 Rroxscaffold_5G00339610 Rroxscaffold_5G00370190 Rroxscaffold_6G00400520 Rroxscaffold_7G00188200
rosa_rugosa Rorug01G0035100 Rorug01G0035200 Rorug01G0131800.1 Rorug01G0193700 Rorug03G0291700 Rorug03G0291800 Rorug03G0291800 Rorug03G0291900 Rorug03G0364400.1 Rorug04G0439300 Rorug04G0439400 Rorug05G0543000 Rorug07G0306800
rosa_samantha Rh1AG048400 Rh1AG309400 Rh1AG358100 Rh1AG424800 Rh1BG046200 Rh1CG052500 Rh1DG056700 Rh2AG452600 Rh2BG465300 Rh2CG439500 Rh2DG245700 Rh2DG245800 Rh2DG474300 Rh4AG053000 Rh4BG050900 Rh4CG057700 Rh4DG049700 Rh5BG052500 Rh5DG543800 Rh6DG164300 Rh7AG422900 Rh7BG328900
rosa_wichuraiana Rw1G004380 Rw4G004270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 277
AccI GTMKAC 1 cut(s) 140
AciI CCGC 1 cut(s) 136
AcsI RAATTY 1 cut(s) 32
AflIII ACRYGT 1 cut(s) 178
AgsI TTSAA 1 cut(s) 331
AjiI CACGTC 1 cut(s) 94
AluBI AGCT 4 cut(s) 127, 200, 241, 326
AluI AGCT 4 cut(s) 127, 200, 241, 326
Alw26I GTCTC 1 cut(s) 321
ApeKI GCWGC 2 cut(s) 238, 248
ApoI RAATTY 1 cut(s) 32
Asp700I GAANNNNTTC 1 cut(s) 113
AspLEI GCGC 1 cut(s) 290
AsuHPI GGTGA 2 cut(s) 79, 175
BaeGI GKGCMC 1 cut(s) 186
BauI CACGAG 1 cut(s) 104
BbsI GAAGAC 1 cut(s) 60
BbvI GCAGC 2 cut(s) 235, 250
BcoDI GTCTC 1 cut(s) 321
BfuAI ACCTGC 1 cut(s) 277
BisI GCNGC 2 cut(s) 239, 249
BlsI GCNGC 2 cut(s) 240, 250
BmgBI CACGTC 1 cut(s) 94
BmsI GCATC 1 cut(s) 205
BpiI GAAGAC 1 cut(s) 60
BpmI CTGGAG 1 cut(s) 222
Bse1I ACTGG 1 cut(s) 27
BseGI GGATG 1 cut(s) 268
BseMII CTCAG 1 cut(s) 138
BseNI ACTGG 1 cut(s) 27
BseSI GKGCMC 1 cut(s) 186
BseXI GCAGC 2 cut(s) 235, 250
BsmAI GTCTC 1 cut(s) 321
Bsp1286I GDGCHC 1 cut(s) 186
BspACI CCGC 1 cut(s) 136
BspCNI CTCAG 1 cut(s) 139
BspMI ACCTGC 1 cut(s) 277
BspQI GCTCTTC 1 cut(s) 278
BsrI ACTGG 1 cut(s) 27
BssNAI GTATAC 1 cut(s) 141
BssSI CACGAG 1 cut(s) 104
Bst1107I GTATAC 1 cut(s) 141
Bst2BI CACGAG 1 cut(s) 104
Bst4CI ACNGT 2 cut(s) 59, 308
Bst6I CTCTTC 1 cut(s) 278
BstAPI GCANNNNNTGC 1 cut(s) 181
BstDEI CTNAG 1 cut(s) 147
BstF5I GGATG 1 cut(s) 268
BstHHI GCGC 1 cut(s) 290
BstMAI GTCTC 1 cut(s) 321
BstMWI GCNNNNNNNGC 4 cut(s) 94, 133, 181, 224
BstNSI RCATGY 1 cut(s) 88
BstSLI GKGCMC 1 cut(s) 186
BstV1I GCAGC 2 cut(s) 235, 250
BstV2I GAAGAC 1 cut(s) 60
BstZ17I GTATAC 1 cut(s) 141
BtrI CACGTC 1 cut(s) 94
BtsCI GGATG 1 cut(s) 268
BtsIMutI CAGTG 1 cut(s) 34
BveI ACCTGC 1 cut(s) 277
CfoI GCGC 1 cut(s) 290
CspCI CAANNNNNGTGG 2 cut(s) 240, 275
CviAII CATG 3 cut(s) 85, 320, 337
CviJI RGCY 5 cut(s) 127, 200, 227, 241, 326
CviKI_1 RGCY 5 cut(s) 127, 200, 227, 241, 326
DdeI CTNAG 1 cut(s) 147
Eam1104I CTCTTC 1 cut(s) 278
EarI CTCTTC 1 cut(s) 278
FaeI CATG 3 cut(s) 88, 323, 340
FaiI YATR 7 cut(s) 49, 51, 86, 99, 141, 321, 338
FatI CATG 3 cut(s) 84, 319, 336
FauNDI CATATG 1 cut(s) 49
FblI GTMKAC 1 cut(s) 140
Fnu4HI GCNGC 2 cut(s) 239, 249
FokI GGATG 1 cut(s) 275
Fsp4HI GCNGC 2 cut(s) 239, 249
GlaI GCGC 1 cut(s) 289
GluI GCNGC 2 cut(s) 239, 249
GsuI CTGGAG 1 cut(s) 222
HhaI GCGC 1 cut(s) 290
Hin1II CATG 3 cut(s) 88, 323, 340
Hin6I GCGC 1 cut(s) 288
HinP1I GCGC 1 cut(s) 288
HinfI GANTC 1 cut(s) 193
HphI GGTGA 2 cut(s) 79, 175
Hpy166II GTNNAC 1 cut(s) 141
Hpy188I TCNGA 1 cut(s) 148
Hpy188III TCNNGA 1 cut(s) 106
Hpy8I GTNNAC 1 cut(s) 141
HpyCH4III ACNGT 2 cut(s) 59, 308
HpyCH4IV ACGT 3 cut(s) 93, 143, 178
HpyCH4V TGCA 3 cut(s) 97, 251, 272
HpyF10VI GCNNNNNNNGC 4 cut(s) 94, 133, 181, 224
HpyF3I CTNAG 1 cut(s) 147
HpySE526I ACGT 3 cut(s) 93, 143, 178
Hsp92II CATG 3 cut(s) 88, 323, 340
HspAI GCGC 1 cut(s) 288
LguI GCTCTTC 1 cut(s) 278
LmnI GCTCC 2 cut(s) 203, 235
LpnPI CCDG 5 cut(s) 40, 102, 186, 270, 282
Lsp1109I GCAGC 2 cut(s) 235, 250
LweI GCATC 1 cut(s) 205
MaeII ACGT 3 cut(s) 93, 143, 178
MaeIII GTNAC 2 cut(s) 80, 150
MboII GAAGA 2 cut(s) 65, 295
MhlI GDGCHC 1 cut(s) 186
MluCI AATT 5 cut(s) 32, 40, 72, 109, 291
MnlI CCTC 1 cut(s) 58
MroXI GAANNNNTTC 1 cut(s) 113
MseI TTAA 1 cut(s) 299
MspA1I CMGCKG 1 cut(s) 241
MwoI GCNNNNNNNGC 4 cut(s) 94, 133, 181, 224
NdeI CATATG 1 cut(s) 49
NlaIII CATG 3 cut(s) 88, 323, 340
NspI RCATGY 1 cut(s) 88
PciSI GCTCTTC 1 cut(s) 278
PdmI GAANNNNTTC 1 cut(s) 113
PfeI GAWTC 1 cut(s) 193
PkrI GCNGC 2 cut(s) 240, 250
PvuII CAGCTG 1 cut(s) 241
SapI GCTCTTC 1 cut(s) 278
SaqAI TTAA 1 cut(s) 299
SatI GCNGC 2 cut(s) 239, 249
SduI GDGCHC 1 cut(s) 186
SetI ASST 9 cut(s) 69, 96, 129, 146, 181, 202, 243, 271, 328
SfaNI GCATC 1 cut(s) 205
Sse9I AATT 5 cut(s) 32, 40, 72, 109, 291
SsiI CCGC 1 cut(s) 136
TaaI ACNGT 2 cut(s) 59, 308
TaiI ACGT 3 cut(s) 96, 146, 181
TasI AATT 5 cut(s) 32, 40, 72, 109, 291
TfiI GAWTC 1 cut(s) 193
Tru1I TTAA 1 cut(s) 299
Tru9I TTAA 1 cut(s) 299
TscAI CASTG 1 cut(s) 34
TseI GCWGC 2 cut(s) 238, 248
TspDTI ATGAA 3 cut(s) 66, 106, 279
TspGWI ACGGA 1 cut(s) 285
TspRI CASTG 1 cut(s) 34
XapI RAATTY 1 cut(s) 32
XceI RCATGY 1 cut(s) 88
XmiI GTMKAC 1 cut(s) 140
XmnI GAANNNNTTC 1 cut(s) 113
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.