Rw6G014060

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0010635
Physical Location & Seq
Forward (+)
26092036 .. 26096331
4296 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G014060.1

Sequence Viewer

Length: 570 bp
ATGGTCCTTGGTGACAAGAGCAAGTTACTTCAAATAATTGATGCTAGATGGCTTTTCTTGGCGTGTCACCCTCGCTTGTGGCTGCGAGTTGAACGATCCATTAAAGATCCATTGGAGCCTGGCGTCTTCCCCAGCATTGAGACAGCGGTTGCTGCCGCAAGGCTTGGCGACACCATTCTAATTTCAGCAGGGGGAAAGCATCTTATTGGTGGAGGTGAGCTACCGGATGAGACAACCCTCATTTGTTCTCGAGGTGCAGACAGTGCATTGGAGTTCCTGTCCACCTGCAAATTGGCAAACTTAACTGTAAAGGCAGAGCCGGGTTGTTGCTTGCTTCATAGAAGTGGAAGACTCACAATAGATGGGTTCGTGCTTCAATGCCAGACAAATCCCCCAGACTTCCTTTCAGTCCCCATTGTGAGTACGGCAAGTGCGCAAACTCTGTTGTCTTCATCGGTGAAGTGTTATAAGGATGGTGTTTCTTGGAGGCCTCTGACATTGCAGCGAGTCCGAGTCATTCATGCTCGGACGTCGACTCTTGTTTTCTGGTTTGATATGGAGCAACAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like

Protein Analysis

189

Amino Acids

20.7

Weight (kDa)

8.19

Isoelectric Point (pI)

43.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 468
AarI CACCTGC 1 cut(s) 293
AatII GACGTC 1 cut(s) 533
Acc16I TGCGCA 1 cut(s) 435
Acc36I ACCTGC 1 cut(s) 293
AccI GTMKAC 1 cut(s) 533
AciI CCGC 2 cut(s) 146, 156
AclWI GGATC 2 cut(s) 90, 101
AcyI GRCGYC 2 cut(s) 123, 530
AfaI GTAC 1 cut(s) 424
AgsI TTSAA 3 cut(s) 32, 92, 377
AjnI CCWGG 1 cut(s) 118
AluBI AGCT 1 cut(s) 220
AluI AGCT 1 cut(s) 220
Alw26I GTCTC 2 cut(s) 134, 224
AlwI GGATC 2 cut(s) 90, 101
Ama87I CYCGRG 1 cut(s) 249
AoxI GGCC 1 cut(s) 488
ApeKI GCWGC 3 cut(s) 82, 152, 502
AspLEI GCGC 1 cut(s) 436
AspS9I GGNCC 1 cut(s) 4
AsuC2I CCSGG 1 cut(s) 321
AsuHPI GGTGA 4 cut(s) 23, 59, 227, 469
AvaI CYCGRG 1 cut(s) 249
AvaII GGWCC 1 cut(s) 4
BbsI GAAGAC 3 cut(s) 118, 355, 441
BbvI GCAGC 3 cut(s) 69, 139, 514
BccI CCATC 3 cut(s) 42, 356, 467
BceAI ACGGC 1 cut(s) 441
BciT130I CCWGG 1 cut(s) 120
BcnI CCSGG 1 cut(s) 321
BcoDI GTCTC 2 cut(s) 134, 224
BfaI CTAG 1 cut(s) 45
BfuAI ACCTGC 1 cut(s) 293
BisI GCNGC 4 cut(s) 83, 153, 156, 503
BlsI GCNGC 4 cut(s) 84, 154, 157, 504
Bme1390I CCNGG 2 cut(s) 120, 321
Bme18I GGWCC 1 cut(s) 4
BmeT110I CYCGRG 1 cut(s) 249
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 1 cut(s) 117
BmrFI CCNGG 2 cut(s) 120, 321
BmsI GCATC 2 cut(s) 31, 208
BpiI GAAGAC 3 cut(s) 118, 355, 441
BpuMI CCSGG 1 cut(s) 321
BsaHI GRCGYC 2 cut(s) 123, 530
BsaJI CCNNGG 1 cut(s) 7
BsaWI WCCGGW 1 cut(s) 223
BsaXI ACNNNNNCTCC 2 cut(s) 263, 293
Bse3DI GCAATG 1 cut(s) 497
BseBI CCWGG 1 cut(s) 120
BseDI CCNNGG 1 cut(s) 7
BseGI GGATG 2 cut(s) 232, 478
BseMI GCAATG 1 cut(s) 497
BseXI GCAGC 3 cut(s) 69, 139, 514
BseYI CCCAGC 1 cut(s) 131
BsgI GTGCAG 1 cut(s) 276
BshFI GGCC 1 cut(s) 490
BsiHKCI CYCGRG 1 cut(s) 249
BsiSI CCGG 2 cut(s) 224, 320
BslFI GGGAC 1 cut(s) 395
BsmAI GTCTC 2 cut(s) 134, 224
BsmFI GGGAC 1 cut(s) 395
BsnI GGCC 1 cut(s) 490
BsoBI CYCGRG 1 cut(s) 249
Bsp143I GATC 2 cut(s) 95, 106
BspACI CCGC 2 cut(s) 146, 156
BspANI GGCC 1 cut(s) 490
BspLI GGNNCC 1 cut(s) 117
BspMI ACCTGC 1 cut(s) 293
BspPI GGATC 2 cut(s) 90, 101
BsrDI GCAATG 1 cut(s) 497
BssECI CCNNGG 1 cut(s) 7
BssMI GATC 2 cut(s) 95, 106
BssNI GRCGYC 2 cut(s) 123, 530
BssT1I CCWWGG 1 cut(s) 7
Bst2UI CCWGG 1 cut(s) 120
Bst4CI ACNGT 2 cut(s) 263, 307
BstACI GRCGYC 2 cut(s) 123, 530
BstAPI GCANNNNNTGC 1 cut(s) 263
BstC8I GCNNGC 1 cut(s) 332
BstF5I GGATG 2 cut(s) 232, 478
BstHHI GCGC 1 cut(s) 436
BstKTI GATC 2 cut(s) 98, 109
BstMAI GTCTC 2 cut(s) 134, 224
BstMBI GATC 2 cut(s) 95, 106
BstMWI GCNNNNNNNGC 2 cut(s) 152, 263
BstNI CCWGG 1 cut(s) 120
BstSCI CCNGG 2 cut(s) 118, 319
BstV1I GCAGC 3 cut(s) 69, 139, 514
BstV2I GAAGAC 3 cut(s) 118, 355, 441
BstX2I RGATCY 1 cut(s) 106
BstYI RGATCY 1 cut(s) 106
BsuRI GGCC 1 cut(s) 490
BtsCI GGATG 2 cut(s) 232, 478
BtsIMutI CAGTG 1 cut(s) 268
BveI ACCTGC 1 cut(s) 293
Cac8I GCNNGC 1 cut(s) 332
CfoI GCGC 1 cut(s) 436
Cfr13I GGNCC 1 cut(s) 4
CseI GACGC 1 cut(s) 112
Csp6I GTAC 1 cut(s) 423
CviAII CATG 1 cut(s) 521
CviJI RGCY 7 cut(s) 52, 82, 118, 163, 220, 319, 490
CviKI_1 RGCY 7 cut(s) 52, 82, 118, 163, 220, 319, 490
CviQI GTAC 1 cut(s) 423
DpnI GATC 2 cut(s) 97, 108
DpnII GATC 2 cut(s) 95, 106
Eco130I CCWWGG 1 cut(s) 7
Eco147I AGGCCT 1 cut(s) 490
Eco47I GGWCC 1 cut(s) 4
Eco88I CYCGRG 1 cut(s) 249
EcoRII CCWGG 1 cut(s) 118
EcoT14I CCWWGG 1 cut(s) 7
ErhI CCWWGG 1 cut(s) 7
FaeI CATG 1 cut(s) 524
FaiI YATR 4 cut(s) 339, 468, 522, 557
FaqI GGGAC 1 cut(s) 395
FatI CATG 1 cut(s) 520
FblI GTMKAC 1 cut(s) 533
Fnu4HI GCNGC 4 cut(s) 83, 153, 156, 503
FokI GGATG 2 cut(s) 239, 485
Fsp4HI GCNGC 4 cut(s) 83, 153, 156, 503
FspBI CTAG 1 cut(s) 45
FspI TGCGCA 1 cut(s) 435
GlaI GCGC 1 cut(s) 435
GluI GCNGC 4 cut(s) 83, 153, 156, 503
GsaI CCCAGC 1 cut(s) 135
HaeIII GGCC 1 cut(s) 490
HapII CCGG 2 cut(s) 224, 320
HgaI GACGC 1 cut(s) 112
HhaI GCGC 1 cut(s) 436
Hin1I GRCGYC 2 cut(s) 123, 530
Hin1II CATG 1 cut(s) 524
Hin6I GCGC 1 cut(s) 434
HinP1I GCGC 1 cut(s) 434
HincII GTYRAC 1 cut(s) 534
HindII GTYRAC 1 cut(s) 534
HinfI GANTC 4 cut(s) 351, 507, 513, 535
HpaII CCGG 2 cut(s) 224, 320
HphI GGTGA 4 cut(s) 23, 59, 227, 469
Hpy166II GTNNAC 2 cut(s) 282, 534
Hpy188I TCNGA 3 cut(s) 495, 512, 528
Hpy188III TCNNGA 1 cut(s) 249
Hpy8I GTNNAC 2 cut(s) 282, 534
Hpy99I CGWCG 1 cut(s) 535
HpyCH4III ACNGT 2 cut(s) 263, 307
HpyCH4IV ACGT 1 cut(s) 530
HpyCH4V TGCA 4 cut(s) 257, 266, 288, 502
HpyF10VI GCNNNNNNNGC 2 cut(s) 152, 263
HpySE526I ACGT 1 cut(s) 530
Hsp92I GRCGYC 2 cut(s) 123, 530
Hsp92II CATG 1 cut(s) 524
HspAI GCGC 1 cut(s) 434
Kzo9I GATC 2 cut(s) 95, 106
LmnI GCTCC 2 cut(s) 115, 559
Lsp1109I GCAGC 3 cut(s) 69, 139, 514
LweI GCATC 2 cut(s) 31, 208
MaeI CTAG 1 cut(s) 45
MaeII ACGT 1 cut(s) 530
MaeIII GTNAC 3 cut(s) 11, 24, 65
MalI GATC 2 cut(s) 97, 108
MboI GATC 2 cut(s) 95, 106
MboII GAAGA 3 cut(s) 118, 360, 441
MflI RGATCY 1 cut(s) 106
MluCI AATT 3 cut(s) 36, 180, 290
MlyI GAGTC 4 cut(s) 345, 516, 522, 529
MnlI CCTC 6 cut(s) 81, 206, 245, 248, 480, 501
MseI TTAA 2 cut(s) 102, 302
MslI CAYNNNNRTG 1 cut(s) 342
MspA1I CMGCKG 1 cut(s) 146
MspI CCGG 2 cut(s) 224, 320
MspR9I CCNGG 2 cut(s) 120, 321
MvaI CCWGG 1 cut(s) 120
MwoI GCNNNNNNNGC 2 cut(s) 152, 263
NciI CCSGG 1 cut(s) 321
NdeII GATC 2 cut(s) 95, 106
NlaIII CATG 1 cut(s) 524
NlaIV GGNNCC 1 cut(s) 117
NmuCI GTSAC 2 cut(s) 11, 65
NsbI TGCGCA 1 cut(s) 435
PaeR7I CTCGAG 1 cut(s) 249
PaqCI CACCTGC 1 cut(s) 293
PceI AGGCCT 1 cut(s) 490
PkrI GCNGC 4 cut(s) 84, 154, 157, 504
PleI GAGTC 4 cut(s) 345, 515, 521, 529
PpsI GAGTC 4 cut(s) 345, 515, 521, 529
PsiI TTATAA 1 cut(s) 468
Psp6I CCWGG 1 cut(s) 118
PspFI CCCAGC 1 cut(s) 131
PspGI CCWGG 1 cut(s) 118
PspN4I GGNNCC 1 cut(s) 117
PspPI GGNCC 1 cut(s) 4
PsuI RGATCY 1 cut(s) 106
RsaI GTAC 1 cut(s) 424
RsaNI GTAC 1 cut(s) 423
RseI CAYNNNNRTG 1 cut(s) 342
SalI GTCGAC 1 cut(s) 532
SaqAI TTAA 2 cut(s) 102, 302
SatI GCNGC 4 cut(s) 83, 153, 156, 503
Sau3AI GATC 2 cut(s) 95, 106
Sau96I GGNCC 1 cut(s) 4
SchI GAGTC 4 cut(s) 345, 516, 522, 529
ScrFI CCNGG 2 cut(s) 120, 321
SetI ASST 5 cut(s) 217, 222, 256, 287, 533
SfaNI GCATC 2 cut(s) 31, 208
Sfr274I CTCGAG 1 cut(s) 249
SinI GGWCC 1 cut(s) 4
SlaI CTCGAG 1 cut(s) 249
SmiMI CAYNNNNRTG 1 cut(s) 342
SmlI CTYRAG 1 cut(s) 249
SmoI CTYRAG 1 cut(s) 249
Sse9I AATT 3 cut(s) 36, 180, 290
SseBI AGGCCT 1 cut(s) 490
SsiI CCGC 2 cut(s) 146, 156
SspMI CTAG 1 cut(s) 45
StuI AGGCCT 1 cut(s) 490
StyD4I CCNGG 2 cut(s) 118, 319
StyI CCWWGG 1 cut(s) 7
TaaI ACNGT 2 cut(s) 263, 307
TaiI ACGT 1 cut(s) 533
TaqI TCGA 2 cut(s) 250, 533
TasI AATT 3 cut(s) 36, 180, 290
TauI GCSGC 1 cut(s) 158
Tru1I TTAA 2 cut(s) 102, 302
Tru9I TTAA 2 cut(s) 102, 302
TscAI CASTG 1 cut(s) 268
TseFI GTSAC 2 cut(s) 11, 65
TseI GCWGC 3 cut(s) 82, 152, 502
Tsp45I GTSAC 2 cut(s) 11, 65
TspDTI ATGAA 3 cut(s) 326, 441, 509
TspRI CASTG 1 cut(s) 268
VpaK11BI GGWCC 1 cut(s) 4
XcmI CCANNNNNNNNNTGG 1 cut(s) 289
XhoI CTCGAG 1 cut(s) 249
XmiI GTMKAC 1 cut(s) 533
XspI CTAG 1 cut(s) 45
ZraI GACGTC 1 cut(s) 531
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.