Rh3DG152900

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0010635
Physical Location & Seq
Reverse (-)
13163788 .. 13164102
315 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG152900.1

Sequence Viewer

Length: 315 bp
ATGTATGACAAAGTGGTTCTATTTCTGTCTCATATTTCTATTGAGTTTGCAGATTGTTATAACACCGCCCTGGTTTGCCACGGATGCCTTTTCTTGGCATGCCACCCTCAATTATGGCTGCAAGTTGAACGATCCATTAAAGATCCATTGGAGCCTGGCGTCTTCCCCATCATTGAGACAGCAGTTGCTGCTGCAAGGTTTGTAAAGTTGTTTCTGTCTGTATTCCACTTTAGCTCATTCGGTGGAGTATTAGAACTAATCATTCTTATTTTTCGTGACATGTTTTTTGTTACAGGCCTGGCGACACCATCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like

Protein Analysis

104

Amino Acids

11.68

Weight (kDa)

5.68

Isoelectric Point (pI)

52.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 60
AciI CCGC 1 cut(s) 66
AclWI GGATC 2 cut(s) 126, 137
AcyI GRCGYC 1 cut(s) 159
AfiI CCNNNNNNNGG 1 cut(s) 94
AflIII ACRYGT 1 cut(s) 279
AgsI TTSAA 1 cut(s) 128
AjnI CCWGG 3 cut(s) 69, 154, 297
AluBI AGCT 1 cut(s) 234
AluI AGCT 1 cut(s) 234
Alw26I GTCTC 2 cut(s) 33, 170
AlwI GGATC 2 cut(s) 126, 137
AlwNI CAGNNNCTG 1 cut(s) 188
AoxI GGCC 1 cut(s) 295
ApeKI GCWGC 3 cut(s) 118, 188, 191
ArsI GACNNNNNNTTYG 2 cut(s) 269, 301
BbsI GAAGAC 1 cut(s) 154
BbvI GCAGC 3 cut(s) 105, 175, 178
BccI CCATC 1 cut(s) 176
BciT130I CCWGG 3 cut(s) 71, 156, 299
BcoDI GTCTC 2 cut(s) 33, 170
BisI GCNGC 3 cut(s) 119, 189, 192
BlsI GCNGC 3 cut(s) 120, 190, 193
Bme1390I CCNGG 3 cut(s) 71, 156, 299
BmiI GGNNCC 1 cut(s) 153
BmrFI CCNGG 3 cut(s) 71, 156, 299
BmsI GCATC 1 cut(s) 74
BpiI GAAGAC 1 cut(s) 154
BsaHI GRCGYC 1 cut(s) 159
BsaJI CCNNGG 2 cut(s) 69, 79
Bsc4I CCNNNNNNNGG 1 cut(s) 94
BseBI CCWGG 3 cut(s) 71, 156, 299
BseDI CCNNGG 2 cut(s) 69, 79
BseGI GGATG 2 cut(s) 89, 308
BseLI CCNNNNNNNGG 1 cut(s) 94
BseXI GCAGC 3 cut(s) 105, 175, 178
BshFI GGCC 1 cut(s) 297
BslI CCNNNNNNNGG 1 cut(s) 94
BsmAI GTCTC 2 cut(s) 33, 170
BsnI GGCC 1 cut(s) 297
Bsp143I GATC 2 cut(s) 131, 142
BspACI CCGC 1 cut(s) 66
BspANI GGCC 1 cut(s) 297
BspLI GGNNCC 1 cut(s) 153
BspPI GGATC 2 cut(s) 126, 137
BssECI CCNNGG 2 cut(s) 69, 79
BssMI GATC 2 cut(s) 131, 142
BssNI GRCGYC 1 cut(s) 159
Bst2UI CCWGG 3 cut(s) 71, 156, 299
BstACI GRCGYC 1 cut(s) 159
BstAPI GCANNNNNTGC 1 cut(s) 188
BstC8I GCNNGC 1 cut(s) 100
BstDSI CCRYGG 1 cut(s) 79
BstF5I GGATG 2 cut(s) 89, 308
BstKTI GATC 2 cut(s) 134, 145
BstMAI GTCTC 2 cut(s) 33, 170
BstMBI GATC 2 cut(s) 131, 142
BstMWI GCNNNNNNNGC 2 cut(s) 84, 188
BstNI CCWGG 3 cut(s) 71, 156, 299
BstNSI RCATGY 2 cut(s) 102, 283
BstSCI CCNGG 3 cut(s) 69, 154, 297
BstV1I GCAGC 3 cut(s) 105, 175, 178
BstV2I GAAGAC 1 cut(s) 154
BstX2I RGATCY 1 cut(s) 142
BstYI RGATCY 1 cut(s) 142
BsuRI GGCC 1 cut(s) 297
BtgI CCRYGG 1 cut(s) 79
BtsCI GGATG 2 cut(s) 89, 308
Cac8I GCNNGC 1 cut(s) 100
CaiI CAGNNNCTG 1 cut(s) 188
CseI GACGC 1 cut(s) 148
CviAII CATG 2 cut(s) 99, 280
CviJI RGCY 4 cut(s) 118, 154, 234, 297
CviKI_1 RGCY 4 cut(s) 118, 154, 234, 297
DpnI GATC 2 cut(s) 133, 144
DpnII GATC 2 cut(s) 131, 142
Eco147I AGGCCT 1 cut(s) 297
EcoRII CCWGG 3 cut(s) 69, 154, 297
FaeI CATG 2 cut(s) 102, 283
FaiI YATR 6 cut(s) 6, 33, 60, 100, 115, 281
FatI CATG 2 cut(s) 98, 279
Fnu4HI GCNGC 3 cut(s) 119, 189, 192
FokI GGATG 2 cut(s) 96, 295
Fsp4HI GCNGC 3 cut(s) 119, 189, 192
GluI GCNGC 3 cut(s) 119, 189, 192
HaeIII GGCC 1 cut(s) 297
HgaI GACGC 1 cut(s) 148
Hin1I GRCGYC 1 cut(s) 159
Hin1II CATG 2 cut(s) 102, 283
Hpy188III TCNNGA 1 cut(s) 275
HpyCH4V TGCA 3 cut(s) 50, 121, 194
HpyF10VI GCNNNNNNNGC 2 cut(s) 84, 188
Hsp92I GRCGYC 1 cut(s) 159
Hsp92II CATG 2 cut(s) 102, 283
Kzo9I GATC 2 cut(s) 131, 142
LmnI GCTCC 1 cut(s) 151
LpnPI CCDG 7 cut(s) 56, 83, 141, 168, 279, 284, 311
Lsp1109I GCAGC 3 cut(s) 105, 175, 178
LweI GCATC 1 cut(s) 74
MaeIII GTNAC 2 cut(s) 275, 289
MalI GATC 2 cut(s) 133, 144
MboI GATC 2 cut(s) 131, 142
MboII GAAGA 1 cut(s) 154
MflI RGATCY 1 cut(s) 142
MluCI AATT 1 cut(s) 110
MnlI CCTC 1 cut(s) 117
MseI TTAA 1 cut(s) 138
MspR9I CCNGG 3 cut(s) 71, 156, 299
MvaI CCWGG 3 cut(s) 71, 156, 299
MwoI GCNNNNNNNGC 2 cut(s) 84, 188
NdeII GATC 2 cut(s) 131, 142
NlaIII CATG 2 cut(s) 102, 283
NlaIV GGNNCC 1 cut(s) 153
NmuCI GTSAC 1 cut(s) 275
NspI RCATGY 2 cut(s) 102, 283
PaeI GCATGC 1 cut(s) 102
PceI AGGCCT 1 cut(s) 297
PciI ACATGT 1 cut(s) 279
PkrI GCNGC 3 cut(s) 120, 190, 193
PscI ACATGT 1 cut(s) 279
PsiI TTATAA 1 cut(s) 60
Psp6I CCWGG 3 cut(s) 69, 154, 297
PspGI CCWGG 3 cut(s) 69, 154, 297
PspN4I GGNNCC 1 cut(s) 153
PstNI CAGNNNCTG 1 cut(s) 188
PsuI RGATCY 1 cut(s) 142
SaqAI TTAA 1 cut(s) 138
SatI GCNGC 3 cut(s) 119, 189, 192
Sau3AI GATC 2 cut(s) 131, 142
ScrFI CCNGG 3 cut(s) 71, 156, 299
SetI ASST 2 cut(s) 200, 236
SfaNI GCATC 1 cut(s) 74
SphI GCATGC 1 cut(s) 102
Sse9I AATT 1 cut(s) 110
SseBI AGGCCT 1 cut(s) 297
SsiI CCGC 1 cut(s) 66
StuI AGGCCT 1 cut(s) 297
StyD4I CCNGG 3 cut(s) 69, 154, 297
TasI AATT 1 cut(s) 110
Tru1I TTAA 1 cut(s) 138
Tru9I TTAA 1 cut(s) 138
TseFI GTSAC 1 cut(s) 275
TseI GCWGC 3 cut(s) 118, 188, 191
Tsp45I GTSAC 1 cut(s) 275
TspGWI ACGGA 1 cut(s) 96
XceI RCATGY 2 cut(s) 102, 283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.