Rh4AG226900

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0010635
Physical Location & Seq
Reverse (-)
52792937 .. 52794945
2009 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG226900.1

Sequence Viewer

Length: 570 bp
ATGTATGACAAAGTTGTTCTATTTCTGTCTCATAATTCTATTGAGTTTGCGGATCGCTATAACACCGCCCTAGTTTGCCACAGATGGCTTTTCTTGGTGTGTCACCCTCGCTTGTGGCTGCGAGTTGAACGATCCATTAAAGATCCATTGGAGCCTGGCGTCTTCCCCAGCATTGAGACAGCGGTTGCTGCCGCAAGGCTTGGCGACACCATTCTAATTTCAGCAGGGGGAAAGCATCTTATTGGTGGAGGTGAGCTGCCGGATGAGACAACCCTCATTTGTTCTCGAGGTGCAGACAGTGCATTGGAGTTCCTGTCCACCTGCAAATTGGCAAACTTAACTGTAAAGGCAGAGCCGGGTTGTTGCTTGCTTCATAGAAGTGGAAGACTCACAATAGATGGGTGCGTGCTTCAGTGCCAGACAAATCCCCTAGACTTCCTTTCAGTCCCCATTGTGAGTACGGCAAGTGCGCAAACTCTGTTGTCTTCATCGGTGAAGTGTTATAAGGATGGTGTTTCTGTTTCTCTGACTCAAATTGGAGGTGCCAACTGCCAAGGCTGTTTCAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like

Protein Analysis

189

Amino Acids

20.34

Weight (kDa)

6.49

Isoelectric Point (pI)

37.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 504
AarI CACCTGC 1 cut(s) 329
Acc16I TGCGCA 1 cut(s) 471
Acc36I ACCTGC 1 cut(s) 329
AccB1I GGYRCC 1 cut(s) 542
AciI CCGC 4 cut(s) 50, 66, 182, 192
AclWI GGATC 3 cut(s) 60, 126, 137
AcuI CTGAAG 1 cut(s) 395
AcyI GRCGYC 1 cut(s) 159
AfaI GTAC 1 cut(s) 460
AgsI TTSAA 2 cut(s) 128, 565
AjnI CCWGG 1 cut(s) 154
AluBI AGCT 1 cut(s) 256
AluI AGCT 1 cut(s) 256
Alw26I GTCTC 3 cut(s) 33, 170, 260
AlwI GGATC 3 cut(s) 60, 126, 137
Ama87I CYCGRG 1 cut(s) 285
ApeKI GCWGC 3 cut(s) 118, 188, 256
AspLEI GCGC 1 cut(s) 472
AsuC2I CCSGG 1 cut(s) 357
AsuHPI GGTGA 3 cut(s) 95, 263, 505
AvaI CYCGRG 1 cut(s) 285
BanI GGYRCC 1 cut(s) 542
BbsI GAAGAC 3 cut(s) 154, 391, 477
BbvI GCAGC 3 cut(s) 105, 175, 243
BccI CCATC 3 cut(s) 78, 392, 503
BceAI ACGGC 1 cut(s) 477
BciT130I CCWGG 1 cut(s) 156
BcnI CCSGG 1 cut(s) 357
BcoDI GTCTC 3 cut(s) 33, 170, 260
BfaI CTAG 3 cut(s) 71, 431, 568
BfuAI ACCTGC 1 cut(s) 329
BisI GCNGC 4 cut(s) 119, 189, 192, 257
BlsI GCNGC 4 cut(s) 120, 190, 193, 258
Bme1390I CCNGG 2 cut(s) 156, 357
BmeT110I CYCGRG 1 cut(s) 285
BmiI GGNNCC 2 cut(s) 153, 544
BmrFI CCNGG 2 cut(s) 156, 357
BmsI GCATC 1 cut(s) 244
BpiI GAAGAC 3 cut(s) 154, 391, 477
BpuMI CCSGG 1 cut(s) 357
BsaHI GRCGYC 1 cut(s) 159
BsaJI CCNNGG 1 cut(s) 553
BsaXI ACNNNNNCTCC 2 cut(s) 299, 329
BseBI CCWGG 1 cut(s) 156
BseDI CCNNGG 1 cut(s) 553
BseGI GGATG 2 cut(s) 268, 514
BseXI GCAGC 3 cut(s) 105, 175, 243
BseYI CCCAGC 1 cut(s) 167
BsgI GTGCAG 1 cut(s) 312
BshNI GGYRCC 1 cut(s) 542
BsiHKCI CYCGRG 1 cut(s) 285
BsiSI CCGG 2 cut(s) 260, 356
BslFI GGGAC 1 cut(s) 431
BsmAI GTCTC 3 cut(s) 33, 170, 260
BsmFI GGGAC 1 cut(s) 431
BsoBI CYCGRG 1 cut(s) 285
Bsp143I GATC 3 cut(s) 52, 131, 142
BspACI CCGC 4 cut(s) 50, 66, 182, 192
BspLI GGNNCC 2 cut(s) 153, 544
BspMI ACCTGC 1 cut(s) 329
BspPI GGATC 3 cut(s) 60, 126, 137
BspT107I GGYRCC 1 cut(s) 542
BssECI CCNNGG 1 cut(s) 553
BssMI GATC 3 cut(s) 52, 131, 142
BssNI GRCGYC 1 cut(s) 159
BssT1I CCWWGG 1 cut(s) 553
Bst2UI CCWGG 1 cut(s) 156
Bst4CI ACNGT 2 cut(s) 299, 343
BstACI GRCGYC 1 cut(s) 159
BstAPI GCANNNNNTGC 1 cut(s) 299
BstC8I GCNNGC 2 cut(s) 368, 407
BstF5I GGATG 2 cut(s) 268, 514
BstHHI GCGC 1 cut(s) 472
BstKTI GATC 3 cut(s) 55, 134, 145
BstMAI GTCTC 3 cut(s) 33, 170, 260
BstMBI GATC 3 cut(s) 52, 131, 142
BstMWI GCNNNNNNNGC 2 cut(s) 188, 299
BstNI CCWGG 1 cut(s) 156
BstSCI CCNGG 2 cut(s) 154, 355
BstV1I GCAGC 3 cut(s) 105, 175, 243
BstV2I GAAGAC 3 cut(s) 154, 391, 477
BstX2I RGATCY 1 cut(s) 142
BstYI RGATCY 1 cut(s) 142
BtsCI GGATG 2 cut(s) 268, 514
BtsIMutI CAGTG 2 cut(s) 304, 419
BveI ACCTGC 1 cut(s) 329
Cac8I GCNNGC 2 cut(s) 368, 407
CfoI GCGC 1 cut(s) 472
CseI GACGC 1 cut(s) 148
Csp6I GTAC 1 cut(s) 459
CviJI RGCY 7 cut(s) 88, 118, 154, 199, 256, 355, 558
CviKI_1 RGCY 7 cut(s) 88, 118, 154, 199, 256, 355, 558
CviQI GTAC 1 cut(s) 459
DpnI GATC 3 cut(s) 54, 133, 144
DpnII GATC 3 cut(s) 52, 131, 142
Eco130I CCWWGG 1 cut(s) 553
Eco57I CTGAAG 1 cut(s) 395
Eco88I CYCGRG 1 cut(s) 285
EcoRII CCWGG 1 cut(s) 154
EcoT14I CCWWGG 1 cut(s) 553
ErhI CCWWGG 1 cut(s) 553
FaiI YATR 5 cut(s) 6, 33, 60, 375, 504
FaqI GGGAC 1 cut(s) 431
Fnu4HI GCNGC 4 cut(s) 119, 189, 192, 257
FokI GGATG 2 cut(s) 275, 521
Fsp4HI GCNGC 4 cut(s) 119, 189, 192, 257
FspBI CTAG 3 cut(s) 71, 431, 568
FspI TGCGCA 1 cut(s) 471
GlaI GCGC 1 cut(s) 471
GluI GCNGC 4 cut(s) 119, 189, 192, 257
GsaI CCCAGC 1 cut(s) 171
HapII CCGG 2 cut(s) 260, 356
HgaI GACGC 1 cut(s) 148
HhaI GCGC 1 cut(s) 472
Hin1I GRCGYC 1 cut(s) 159
Hin6I GCGC 1 cut(s) 470
HinP1I GCGC 1 cut(s) 470
HinfI GANTC 2 cut(s) 387, 529
HpaII CCGG 2 cut(s) 260, 356
HphI GGTGA 3 cut(s) 95, 263, 505
Hpy166II GTNNAC 1 cut(s) 318
Hpy188I TCNGA 1 cut(s) 528
Hpy188III TCNNGA 1 cut(s) 285
Hpy8I GTNNAC 1 cut(s) 318
HpyCH4III ACNGT 2 cut(s) 299, 343
HpyCH4V TGCA 3 cut(s) 293, 302, 324
HpyF10VI GCNNNNNNNGC 2 cut(s) 188, 299
Hsp92I GRCGYC 1 cut(s) 159
HspAI GCGC 1 cut(s) 470
Kzo9I GATC 3 cut(s) 52, 131, 142
LmnI GCTCC 1 cut(s) 151
LpnPI CCDG 9 cut(s) 141, 168, 181, 210, 273, 326, 334, 369, 431
Lsp1109I GCAGC 3 cut(s) 105, 175, 243
LweI GCATC 1 cut(s) 244
MaeI CTAG 3 cut(s) 71, 431, 568
MaeIII GTNAC 1 cut(s) 101
MalI GATC 3 cut(s) 54, 133, 144
MboI GATC 3 cut(s) 52, 131, 142
MboII GAAGA 3 cut(s) 154, 396, 477
MflI RGATCY 1 cut(s) 142
MluCI AATT 4 cut(s) 34, 216, 326, 534
MlyI GAGTC 2 cut(s) 381, 523
MnlI CCTC 5 cut(s) 117, 242, 281, 284, 533
MseI TTAA 2 cut(s) 138, 338
MslI CAYNNNNRTG 1 cut(s) 378
MspA1I CMGCKG 1 cut(s) 182
MspI CCGG 2 cut(s) 260, 356
MspR9I CCNGG 2 cut(s) 156, 357
MvaI CCWGG 1 cut(s) 156
MwoI GCNNNNNNNGC 2 cut(s) 188, 299
NciI CCSGG 1 cut(s) 357
NdeII GATC 3 cut(s) 52, 131, 142
NlaIV GGNNCC 2 cut(s) 153, 544
NmuCI GTSAC 1 cut(s) 101
NsbI TGCGCA 1 cut(s) 471
PaeR7I CTCGAG 1 cut(s) 285
PaqCI CACCTGC 1 cut(s) 329
PkrI GCNGC 4 cut(s) 120, 190, 193, 258
PleI GAGTC 2 cut(s) 381, 523
PpsI GAGTC 2 cut(s) 381, 523
PsiI TTATAA 1 cut(s) 504
Psp6I CCWGG 1 cut(s) 154
PspFI CCCAGC 1 cut(s) 167
PspGI CCWGG 1 cut(s) 154
PspN4I GGNNCC 2 cut(s) 153, 544
PsuI RGATCY 1 cut(s) 142
RsaI GTAC 1 cut(s) 460
RsaNI GTAC 1 cut(s) 459
RseI CAYNNNNRTG 1 cut(s) 378
SaqAI TTAA 2 cut(s) 138, 338
SatI GCNGC 4 cut(s) 119, 189, 192, 257
Sau3AI GATC 3 cut(s) 52, 131, 142
SchI GAGTC 2 cut(s) 381, 523
ScrFI CCNGG 2 cut(s) 156, 357
SetI ASST 5 cut(s) 253, 258, 292, 323, 544
SfaNI GCATC 1 cut(s) 244
Sfr274I CTCGAG 1 cut(s) 285
SlaI CTCGAG 1 cut(s) 285
SmiMI CAYNNNNRTG 1 cut(s) 378
SmlI CTYRAG 1 cut(s) 285
SmoI CTYRAG 1 cut(s) 285
Sse9I AATT 4 cut(s) 34, 216, 326, 534
SsiI CCGC 4 cut(s) 50, 66, 182, 192
SspMI CTAG 3 cut(s) 71, 431, 568
StyD4I CCNGG 2 cut(s) 154, 355
StyI CCWWGG 1 cut(s) 553
TaaI ACNGT 2 cut(s) 299, 343
TaqI TCGA 1 cut(s) 286
TasI AATT 4 cut(s) 34, 216, 326, 534
TauI GCSGC 1 cut(s) 194
Tru1I TTAA 2 cut(s) 138, 338
Tru9I TTAA 2 cut(s) 138, 338
TscAI CASTG 2 cut(s) 304, 419
TseFI GTSAC 1 cut(s) 101
TseI GCWGC 3 cut(s) 118, 188, 256
Tsp45I GTSAC 1 cut(s) 101
TspDTI ATGAA 2 cut(s) 362, 477
TspRI CASTG 2 cut(s) 304, 419
XcmI CCANNNNNNNNNTGG 1 cut(s) 325
XhoI CTCGAG 1 cut(s) 285
XspI CTAG 3 cut(s) 71, 431, 568
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.