Rorug04G0439200

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0010635
Physical Location & Seq
Reverse (-)
59613010 .. 59614167
1158 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0439200.1

Sequence Viewer

Length: 1158 bp
ATGCTCTCATTCCGGCTATACGCCGCCGTTTCGTTCCTCTTCAGTGTCTCCCTCCTCTTCCCTCCCTTTTGCATTGGGATTCGCTCCTTCCCGACCCGCGCCATCGACGCCTCCGGAGACGGCGCTTCCGCGGCCTGGTCGCGATTCTCCGAGGCGCCGGATTATCGTAACGGAGAGGAATGCGCCACGTCGTTTAACCGCGAGATGGTGTCCTCGTGCGACGCGTCGTTGGTCCACATCGCGATGACTCTTGACTCGGAGTATCTCCGGGGCTCCGTCGCCGCCGTCCACTCGGTTCTGAAGCACGCTTCTTGCCCCGAAAACGTGTTCTTTCACTTCATCGCGGCCGAGTTCGACCCGGCCAGCCCTCGGGTCCTGACCCAACTCGTCCGATCCACTTTTCCCTCCCTCAATTTCAAGGTCTATATTTTCCGGGAAGACACCGTCATCAACCTAATCTCCACTTCAATCCGGGTCGCCCTGGAAAACCCGCTTAACTACGCCCGGAACTACTTGGGCGACATATTGGGCCGGTGCGTGGAGCGGGTCATCTACTTGGACTCCGACGTCCTCGTAGTCGACGACATTCACAAGCTCTGGAATATCTCCCTAACCGGGTCGCGGGTCATCGGAGCCCCGGAGTACTGCCACGCCAACTTCACCAAGTACTTCACCGACGGGTTCTGGTCGGACCCGGTTCTCTCCCGGGTCTTCGCGACCCGGAACCCCTGCTACTTCAACACCGGCGTCATGGTCATGGACCTAGTCCGATGGCGGGAAGGAAACTTCCGGAAGAAGATCGAGAACTGGATGGAGTTGCAGAGGAAGCGAAGGATTTACGATCTGGGTTCTCTCCCGCCGTTTTTGCTTGTCTTTGCCGGAAATGTGGAGGCCATAGATCACCGGTGGAACCAGCACGGCCTCGGCGGCGACAATGTCAGAGGCAGCTGCCGGTCTCTGCATCCTGGGCCGGTTTCTTTACTCCATTGGAGCGGAAAAGGCAAGCCGTGGGTGAGACTGGAGTCGAAGAAGGCTTGCCCTCTGGACCATGTTTGGGAGCCTTATGATCTCTACAAGCACCGCAACGTTGCAAAGTATCAGTCTTTTTCATCAATTTCTGCTTCTACATTGATTGGGTTTTCGACCTATTTGTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like

Protein Analysis

385

Amino Acids

43.61

Weight (kDa)

8.51

Isoelectric Point (pI)

45.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_8 PF01501 79 - 339 7.2e-55 Glycosyl transferase family 8
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 566, 1150
AatII GACGTC 1 cut(s) 570
AccB1I GGYRCC 1 cut(s) 154
AccBSI CCGCTC 2 cut(s) 544, 993
AccI GTMKAC 1 cut(s) 579
AccII CGCG 9 cut(s) 99, 131, 142, 201, 224, 242, 344, 622, 716
AccIII TCCGGA 2 cut(s) 113, 789
AclI AACGTT 1 cut(s) 1086
AclWI GGATC 1 cut(s) 387
AcoI YGGCCR 2 cut(s) 345, 360
AcuI CTGAAG 2 cut(s) 25, 320
AcyI GRCGYC 4 cut(s) 108, 155, 567, 747
AfaI GTAC 2 cut(s) 644, 668
AfiI CCNNNNNNNGG 8 cut(s) 135, 205, 369, 538, 615, 621, 775, 1054
AflIII ACRYGT 2 cut(s) 222, 324
AgeI ACCGGT 1 cut(s) 903
AgsI TTSAA 3 cut(s) 418, 468, 739
AjiI CACGTC 1 cut(s) 189
AjnI CCWGG 3 cut(s) 134, 480, 964
AluBI AGCT 2 cut(s) 595, 948
AluI AGCT 2 cut(s) 595, 948
Alw26I GTCTC 4 cut(s) 52, 111, 960, 1009
AlwI GGATC 1 cut(s) 387
Ama87I CYCGRG 2 cut(s) 369, 705
Aor13HI TCCGGA 2 cut(s) 113, 789
AoxI GGCC 7 cut(s) 132, 345, 360, 529, 891, 919, 968
ApeKI GCWGC 2 cut(s) 945, 948
ArsI GACNNNNNNTTYG 2 cut(s) 1085, 1117
AsiGI ACCGGT 1 cut(s) 903
AspLEI GCGC 4 cut(s) 101, 125, 157, 185
AspS9I GGNCC 7 cut(s) 232, 373, 529, 691, 760, 968, 1045
AsuHPI GGTGA 4 cut(s) 652, 664, 893, 1024
AvaI CYCGRG 2 cut(s) 369, 705
AvaII GGWCC 5 cut(s) 232, 373, 691, 760, 1045
BanI GGYRCC 1 cut(s) 154
BanII GRGCYC 2 cut(s) 275, 637
BauI CACGAG 1 cut(s) 214
BbsI GAAGAC 2 cut(s) 444, 703
BbvI GCAGC 2 cut(s) 935, 957
BccI CCATC 4 cut(s) 110, 199, 765, 805
BceAI ACGGC 6 cut(s) 11, 136, 269, 844, 934, 991
BciT130I CCWGG 3 cut(s) 136, 482, 966
BcoDI GTCTC 4 cut(s) 52, 111, 960, 1009
BfaI CTAG 1 cut(s) 764
BfoI RGCGCY 2 cut(s) 126, 158
BglI GCCNNNNNGGC 1 cut(s) 927
BisI GCNGC 7 cut(s) 24, 132, 282, 345, 928, 946, 949
BlsI GCNGC 7 cut(s) 25, 133, 283, 346, 929, 947, 950
BmcAI AGTACT 2 cut(s) 644, 668
Bme18I GGWCC 5 cut(s) 232, 373, 691, 760, 1045
BmeT110I CYCGRG 2 cut(s) 369, 705
BmgBI CACGTC 1 cut(s) 189
BmgT120I GGNCC 7 cut(s) 232, 373, 529, 691, 760, 968, 1045
BmiI GGNNCC 8 cut(s) 156, 274, 374, 634, 693, 725, 911, 1059
BmsI GCATC 1 cut(s) 970
BoxI GACNNNNGTC 1 cut(s) 1021
BpiI GAAGAC 2 cut(s) 444, 703
BpmI CTGGAG 1 cut(s) 1040
BsaHI GRCGYC 4 cut(s) 108, 155, 567, 747
BsaI GGTCTC 1 cut(s) 960
BsaWI WCCGGW 3 cut(s) 113, 789, 903
BsaXI ACNNNNNCTCC 4 cut(s) 443, 473, 545, 575
Bsc4I CCNNNNNNNGG 8 cut(s) 135, 205, 369, 538, 615, 621, 775, 1054
Bse118I RCCGGY 5 cut(s) 531, 743, 903, 951, 970
Bse1I ACTGG 2 cut(s) 812, 1023
BseAI TCCGGA 2 cut(s) 113, 789
BseBI CCWGG 3 cut(s) 136, 482, 966
BseGI GGATG 2 cut(s) 816, 961
BseLI CCNNNNNNNGG 8 cut(s) 135, 205, 369, 538, 615, 621, 775, 1054
BseNI ACTGG 2 cut(s) 812, 1023
BseRI GAGGAG 1 cut(s) 44
BseX3I CGGCCG 1 cut(s) 345
BseXI GCAGC 2 cut(s) 935, 957
Bsh1236I CGCG 9 cut(s) 99, 131, 142, 201, 224, 242, 344, 622, 716
Bsh1285I CGRYCG 1 cut(s) 348
BshFI GGCC 7 cut(s) 134, 347, 362, 531, 893, 921, 970
BshNI GGYRCC 1 cut(s) 154
BshTI ACCGGT 1 cut(s) 903
BsiEI CGRYCG 1 cut(s) 348
BsiHKCI CYCGRG 2 cut(s) 369, 705
BslI CCNNNNNNNGG 8 cut(s) 135, 205, 369, 538, 615, 621, 775, 1054
BsmAI GTCTC 4 cut(s) 52, 111, 960, 1009
BsmBI CGTCTC 1 cut(s) 111
BsmI GAATGC 1 cut(s) 185
BsnI GGCC 7 cut(s) 134, 347, 362, 531, 893, 921, 970
Bso31I GGTCTC 1 cut(s) 960
BsoBI CYCGRG 2 cut(s) 369, 705
Bsp1286I GDGCHC 2 cut(s) 275, 637
Bsp13I TCCGGA 2 cut(s) 113, 789
Bsp143I GATC 5 cut(s) 392, 798, 841, 898, 1066
Bsp68I TCGCGA 3 cut(s) 142, 242, 716
BspANI GGCC 7 cut(s) 134, 347, 362, 531, 893, 921, 970
BspEI TCCGGA 2 cut(s) 113, 789
BspFNI CGCG 9 cut(s) 99, 131, 142, 201, 224, 242, 344, 622, 716
BspLI GGNNCC 8 cut(s) 156, 274, 374, 634, 693, 725, 911, 1059
BspPI GGATC 1 cut(s) 387
BspT107I GGYRCC 1 cut(s) 154
BspTNI GGTCTC 1 cut(s) 960
BsrBI CCGCTC 2 cut(s) 544, 993
BsrFI RCCGGY 5 cut(s) 531, 743, 903, 951, 970
BsrI ACTGG 2 cut(s) 812, 1023
BssAI RCCGGY 5 cut(s) 531, 743, 903, 951, 970
BssMI GATC 5 cut(s) 392, 798, 841, 898, 1066
BssNI GRCGYC 4 cut(s) 108, 155, 567, 747
BssSI CACGAG 1 cut(s) 214
Bst2BI CACGAG 1 cut(s) 214
Bst2UI CCWGG 3 cut(s) 136, 482, 966
Bst4CI ACNGT 1 cut(s) 445
Bst6I CTCTTC 2 cut(s) 44, 62
BstACI GRCGYC 4 cut(s) 108, 155, 567, 747
BstC8I GCNNGC 4 cut(s) 306, 364, 1004, 1036
BstDSI CCRYGG 2 cut(s) 129, 1007
BstF5I GGATG 2 cut(s) 816, 961
BstFNI CGCG 9 cut(s) 99, 131, 142, 201, 224, 242, 344, 622, 716
BstH2I RGCGCY 2 cut(s) 126, 158
BstHHI GCGC 4 cut(s) 101, 125, 157, 185
BstKTI GATC 5 cut(s) 395, 801, 844, 901, 1069
BstMAI GTCTC 4 cut(s) 52, 111, 960, 1009
BstMBI GATC 5 cut(s) 392, 798, 841, 898, 1066
BstMCI CGRYCG 1 cut(s) 348
BstMWI GCNNNNNNNGC 7 cut(s) 107, 131, 826, 865, 927, 967, 999
BstNI CCWGG 3 cut(s) 136, 482, 966
BstPAI GACNNNNGTC 1 cut(s) 1021
BstUI CGCG 9 cut(s) 99, 131, 142, 201, 224, 242, 344, 622, 716
BstV1I GCAGC 2 cut(s) 935, 957
BstV2I GAAGAC 2 cut(s) 444, 703
BstZI CGGCCG 1 cut(s) 345
BsuRI GGCC 7 cut(s) 134, 347, 362, 531, 893, 921, 970
BtgI CCRYGG 2 cut(s) 129, 1007
BtgZI GCGATG 3 cut(s) 223, 257, 325
BtrI CACGTC 1 cut(s) 189
BtsCI GGATG 2 cut(s) 816, 961
BtsIMutI CAGTG 1 cut(s) 49
BtuMI TCGCGA 3 cut(s) 142, 242, 716
Cac8I GCNNGC 4 cut(s) 306, 364, 1004, 1036
CfoI GCGC 4 cut(s) 101, 125, 157, 185
Cfr10I RCCGGY 5 cut(s) 531, 743, 903, 951, 970
Cfr13I GGNCC 7 cut(s) 232, 373, 529, 691, 760, 968, 1045
Cfr42I CCGCGG 1 cut(s) 132
Cfr9I CCCGGG 1 cut(s) 705
CseI GACGC 4 cut(s) 116, 213, 230, 736
Csp6I GTAC 2 cut(s) 643, 667
CspAI ACCGGT 1 cut(s) 903
CviAII CATG 3 cut(s) 751, 757, 1049
CviQI GTAC 2 cut(s) 643, 667
DinI GGCGCC 1 cut(s) 156
DpnI GATC 5 cut(s) 394, 800, 843, 900, 1068
DpnII GATC 5 cut(s) 392, 798, 841, 898, 1066
DrdI GACNNNNNNGTC 2 cut(s) 566, 1150
DseDI GACNNNNNNGTC 2 cut(s) 566, 1150
EaeI YGGCCR 2 cut(s) 345, 360
EagI CGGCCG 1 cut(s) 345
Eam1104I CTCTTC 2 cut(s) 44, 62
EarI CTCTTC 2 cut(s) 44, 62
EclXI CGGCCG 1 cut(s) 345
Eco24I GRGCYC 2 cut(s) 275, 637
Eco31I GGTCTC 1 cut(s) 960
Eco47I GGWCC 5 cut(s) 232, 373, 691, 760, 1045
Eco52I CGGCCG 1 cut(s) 345
Eco57I CTGAAG 2 cut(s) 25, 320
Eco88I CYCGRG 2 cut(s) 369, 705
EcoO109I RGGNCCY 1 cut(s) 373
EcoRII CCWGG 3 cut(s) 134, 480, 964
EcoT38I GRGCYC 2 cut(s) 275, 637
EgeI GGCGCC 1 cut(s) 156
EheI GGCGCC 1 cut(s) 156
Esp3I CGTCTC 1 cut(s) 111
FaeI CATG 3 cut(s) 754, 760, 1052
FaiI YATR 8 cut(s) 19, 426, 524, 752, 758, 896, 1050, 1065
FatI CATG 3 cut(s) 750, 756, 1048
FauI CCCGC 6 cut(s) 104, 498, 537, 615, 768, 864
FblI GTMKAC 1 cut(s) 579
Fnu4HI GCNGC 7 cut(s) 24, 132, 282, 345, 928, 946, 949
FokI GGATG 2 cut(s) 823, 948
FriOI GRGCYC 2 cut(s) 275, 637
Fsp4HI GCNGC 7 cut(s) 24, 132, 282, 345, 928, 946, 949
FspBI CTAG 1 cut(s) 764
GlaI GCGC 4 cut(s) 100, 124, 156, 184
GluI GCNGC 7 cut(s) 24, 132, 282, 345, 928, 946, 949
GsuI CTGGAG 1 cut(s) 1040
HaeII RGCGCY 2 cut(s) 126, 158
HaeIII GGCC 7 cut(s) 134, 347, 362, 531, 893, 921, 970
HgaI GACGC 4 cut(s) 116, 213, 230, 736
HhaI GCGC 4 cut(s) 101, 125, 157, 185
Hin1I GRCGYC 4 cut(s) 108, 155, 567, 747
Hin1II CATG 3 cut(s) 754, 760, 1052
Hin6I GCGC 4 cut(s) 99, 123, 155, 183
HinP1I GCGC 4 cut(s) 99, 123, 155, 183
HincII GTYRAC 1 cut(s) 580
HindII GTYRAC 1 cut(s) 580
HinfI GANTC 6 cut(s) 79, 144, 247, 254, 560, 1022
HphI GGTGA 4 cut(s) 652, 664, 893, 1024
Hpy166II GTNNAC 3 cut(s) 235, 289, 580
Hpy188I TCNGA 9 cut(s) 151, 259, 300, 392, 565, 632, 691, 770, 941
Hpy8I GTNNAC 3 cut(s) 235, 289, 580
Hpy99I CGWCG 8 cut(s) 110, 193, 224, 229, 281, 569, 584, 680
HpyAV CCTTC 4 cut(s) 97, 773, 825, 1024
HpyCH4III ACNGT 1 cut(s) 445
HpyCH4IV ACGT 4 cut(s) 188, 324, 567, 1086
HpyCH4V TGCA 4 cut(s) 72, 820, 961, 1091
HpyF10VI GCNNNNNNNGC 7 cut(s) 107, 131, 826, 865, 927, 967, 999
HpySE526I ACGT 4 cut(s) 188, 324, 567, 1086
Hsp92I GRCGYC 4 cut(s) 108, 155, 567, 747
Hsp92II CATG 3 cut(s) 754, 760, 1052
HspAI GCGC 4 cut(s) 99, 123, 155, 183
KasI GGCGCC 1 cut(s) 154
Kpn2I TCCGGA 2 cut(s) 113, 789
KspI CCGCGG 1 cut(s) 132
Kzo9I GATC 5 cut(s) 392, 798, 841, 898, 1066
LmnI GCTCC 6 cut(s) 89, 278, 541, 632, 990, 1057
Lsp1109I GCAGC 2 cut(s) 935, 957
LweI GCATC 1 cut(s) 970
MaeI CTAG 1 cut(s) 764
MaeII ACGT 4 cut(s) 188, 324, 567, 1086
MaeIII GTNAC 1 cut(s) 167
MalI GATC 5 cut(s) 394, 800, 843, 900, 1068
MbiI CCGCTC 2 cut(s) 544, 993
MboI GATC 5 cut(s) 392, 798, 841, 898, 1066
MboII GAAGA 7 cut(s) 31, 49, 449, 703, 805, 808, 1039
MhlI GDGCHC 2 cut(s) 275, 637
MluCI AATT 2 cut(s) 412, 1113
MluI ACGCGT 1 cut(s) 222
Mly113I GGCGCC 1 cut(s) 155
MlyI GAGTC 4 cut(s) 241, 248, 554, 1031
MmeI TCCRAC 2 cut(s) 588, 669
MroI TCCGGA 2 cut(s) 113, 789
MseI TTAA 2 cut(s) 195, 495
MslI CAYNNNNRTG 2 cut(s) 242, 755
MspA1I CMGCKG 2 cut(s) 131, 948
Mva1269I GAATGC 1 cut(s) 185
MvaI CCWGG 3 cut(s) 136, 482, 966
MvnI CGCG 9 cut(s) 99, 131, 142, 201, 224, 242, 344, 622, 716
MwoI GCNNNNNNNGC 7 cut(s) 107, 131, 826, 865, 927, 967, 999
NarI GGCGCC 1 cut(s) 155
NdeII GATC 5 cut(s) 392, 798, 841, 898, 1066
NlaIII CATG 3 cut(s) 754, 760, 1052
NlaIV GGNNCC 8 cut(s) 156, 274, 374, 634, 693, 725, 911, 1059
NmeAIII GCCGAG 2 cut(s) 373, 903
NruI TCGCGA 3 cut(s) 142, 242, 716
PcsI WCGNNNNNNNCGW 2 cut(s) 221, 579
PctI GAATGC 1 cut(s) 185
PfeI GAWTC 2 cut(s) 79, 144
PflFI GACNNNGTC 3 cut(s) 443, 764, 935
PfoI TCCNGGA 1 cut(s) 432
PinAI ACCGGT 1 cut(s) 903
PkrI GCNGC 7 cut(s) 25, 133, 283, 346, 929, 947, 950
PleI GAGTC 4 cut(s) 241, 248, 554, 1030
PluTI GGCGCC 1 cut(s) 158
PpsI GAGTC 4 cut(s) 241, 248, 554, 1030
PpuMI RGGWCCY 1 cut(s) 373
PshAI GACNNNNGTC 1 cut(s) 1021
Psp1406I AACGTT 1 cut(s) 1086
Psp5II RGGWCCY 1 cut(s) 373
Psp6I CCWGG 3 cut(s) 134, 480, 964
PspGI CCWGG 3 cut(s) 134, 480, 964
PspN4I GGNNCC 8 cut(s) 156, 274, 374, 634, 693, 725, 911, 1059
PspPI GGNCC 7 cut(s) 232, 373, 529, 691, 760, 968, 1045
PspPPI RGGWCCY 1 cut(s) 373
PsrI GAACNNNNNNTAC 2 cut(s) 716, 748
PsyI GACNNNGTC 3 cut(s) 443, 764, 935
PvuII CAGCTG 1 cut(s) 948
RruI TCGCGA 3 cut(s) 142, 242, 716
RsaI GTAC 2 cut(s) 644, 668
RsaNI GTAC 2 cut(s) 643, 667
RseI CAYNNNNRTG 2 cut(s) 242, 755
SacII CCGCGG 1 cut(s) 132
SalI GTCGAC 1 cut(s) 578
SaqAI TTAA 2 cut(s) 195, 495
SatI GCNGC 7 cut(s) 24, 132, 282, 345, 928, 946, 949
Sau3AI GATC 5 cut(s) 392, 798, 841, 898, 1066
Sau96I GGNCC 7 cut(s) 232, 373, 529, 691, 760, 968, 1045
ScaI AGTACT 2 cut(s) 644, 668
SchI GAGTC 4 cut(s) 241, 248, 554, 1031
SduI GDGCHC 2 cut(s) 275, 637
SfaNI GCATC 1 cut(s) 970
SfoI GGCGCC 1 cut(s) 156
Sfr303I CCGCGG 1 cut(s) 132
SgrAI CRCCGGYG 2 cut(s) 743, 903
SgrBI CCGCGG 1 cut(s) 132
SinI GGWCC 5 cut(s) 232, 373, 691, 760, 1045
SmaI CCCGGG 1 cut(s) 707
SmiMI CAYNNNNRTG 2 cut(s) 242, 755
Sse9I AATT 2 cut(s) 412, 1113
SspDI GGCGCC 1 cut(s) 154
SspMI CTAG 1 cut(s) 764
TaaI ACNGT 1 cut(s) 445
TaiI ACGT 4 cut(s) 191, 327, 570, 1089
TaqI TCGA 6 cut(s) 105, 354, 579, 801, 1025, 1142
TasI AATT 2 cut(s) 412, 1113
TatI WGTACW 2 cut(s) 642, 666
TauI GCSGC 5 cut(s) 26, 134, 284, 347, 930
TfiI GAWTC 2 cut(s) 79, 144
Tru1I TTAA 2 cut(s) 195, 495
Tru9I TTAA 2 cut(s) 195, 495
TscAI CASTG 1 cut(s) 49
TseI GCWGC 2 cut(s) 945, 948
TspDTI ATGAA 2 cut(s) 328, 1098
TspGWI ACGGA 2 cut(s) 186, 265
TspMI CCCGGG 1 cut(s) 705
TspRI CASTG 1 cut(s) 49
Tth111I GACNNNGTC 3 cut(s) 443, 764, 935
VpaK11BI GGWCC 5 cut(s) 232, 373, 691, 760, 1045
XmaI CCCGGG 1 cut(s) 705
XmiI GTMKAC 1 cut(s) 579
XspI CTAG 1 cut(s) 764
ZraI GACGTC 1 cut(s) 568
ZrmI AGTACT 2 cut(s) 644, 668
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.