Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003629.1

Orthogroup ID

OG0011150

Physical Location & Seq

Genomic Coordinates Reverse (-)

277875 .. 281800

Gene Structure 3926 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

atgacttcctatgggtttctgttgtacggccctggctcatatgcttggtaccagtatcttgatcatgctttgccagagaaaacagtcatgaaccttttgttgaaggttttattgaaccaagttgtgcttggtccatctgtgattgctgttgtttttgcatggaacaatttatggcaagggaaactctcacagcttccagataaataccgtaaagatgctcttcccacattactttatggatttaggttctggatacccgtcagtctattaaacttctgggttgtacctcttcaagcccgtgtagctttcatgtgtgtgggttcaatattctggaacttctgcttgtcttcaacaatgagcaaaagaaatttccagaagcaacttcttaatgcagttggcgtcaagtttagagatgattgtaaaaccttggacctagactggaatgagtacaagcagaaagatactgatattgccagtggaattgttaatgacatgttatattcaaagctattgtcaccccctcaacaaatattggagtacaagatcatgtctattctaaaaccactggcccaagtgcaacttccagtggattggaatgagatacataaacgtcacccagtacaacgaatcagcccatatactgattggaacgaagacatgatgaacagaagaaccaactctaacagttcagccacatttaatccgagacttgcctaccctcctccttctcttcctcctcctcctccgcctcctcctcgtacccatgataatccatatgactacttttttccttcttcttctccaccttccctttcttctcctcctccgccctccctttcttctcctcttaaccatcttactccatatgactactttttttcaattgatgatgatgatgttaatgatcactggcatttcgaggaacctgttcagcccctgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006950 GO:0006979 GO:0008150 GO:0009987 GO:0030154 GO:0032502 GO:0033554 GO:0034599 GO:0034614 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043473 GO:0044424 GO:0044444 GO:0044464 GO:0048066 GO:0048869 GO:0050896 GO:0050931 GO:0050935 GO:0051716 GO:0070887 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

Mpv17_PMP22

Protein Analysis

313

Amino Acids

36.12

Weight (kDa)

6.37

Isoelectric Point (pI)

53.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mpv17_PMP22	PF04117	57 - 116	2.4e-15	Mpv17 / PMP22 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011150)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42770
fragaria_vesca	FvH4_6g27820 FvH4_6g27820
malus_domestica	MD09G1234300.v1.1 MD17G1263400.v1.1
prunus_persica	Prupe.3G112500_v2.0.a1 Prupe.3G112500_v2.0.a1 Prupe.3G112500_v2.0.a1
pyrus_communis	pycom17g26360
rosa_chinensis	RchiOBHm_Chr2g0131101
rosa_laevigata	RLG00000019167
rosa_multiflora	Rmu_sc0003629.1_g000065 Rmu_sc0034784.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113200
rosa_rugosa	Rorug02G0295000
rosa_samantha	Rh2AG347300 Rh2BG354800 Rh2CG333500 Rh2DG372700
rosa_wichuraiana	Rw2G028200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	48
AccB1I	GGYRCC	1 cut(s)	48
AciI	CCGC	2 cut(s)	746, 827
AcsI	RAATTY	1 cut(s)	367
AcyI	GRCGYC	1 cut(s)	399
AfaI	GTAC	7 cut(s)	26, 50, 285, 449, 539, 621, 760
AflIII	ACRYGT	1 cut(s)	492
AgsI	TTSAA	7 cut(s)	103, 115, 293, 324, 351, 504, 882
AjnI	CCWGG	1 cut(s)	31
AjuI	GAANNNNNNNTTGG	2 cut(s)	564, 596
AluBI	AGCT	3 cut(s)	193, 305, 508
AluI	AGCT	3 cut(s)	193, 305, 508
Alw26I	GTCTC	1 cut(s)	700
AlwNI	CAGNNNCTG	1 cut(s)	937
AoxI	GGCC	2 cut(s)	28, 567
ApoI	RAATTY	1 cut(s)	367
ArsI	GACNNNNNNTTYG	2 cut(s)	497, 529
Asp700I	GAANNNNTTC	1 cut(s)	927
Asp718I	GGTACC	1 cut(s)	48
AspS9I	GGNCC	4 cut(s)	29, 131, 430, 568
AsuHPI	GGTGA	2 cut(s)	507, 605
AvaII	GGWCC	2 cut(s)	131, 430
BanI	GGYRCC	1 cut(s)	48
BbsI	GAAGAC	2 cut(s)	339, 660
BccI	CCATC	2 cut(s)	142, 861
BceAI	ACGGC	1 cut(s)	43
BciT130I	CCWGG	1 cut(s)	33
BciVI	GTATCC	1 cut(s)	246
BclI	TGATCA	2 cut(s)	61, 904
BcoDI	GTCTC	1 cut(s)	700
BfaI	CTAG	1 cut(s)	434
BfuI	GTATCC	1 cut(s)	246
Bme1390I	CCNGG	1 cut(s)	33
Bme18I	GGWCC	2 cut(s)	131, 430
BmgT120I	GGNCC	4 cut(s)	29, 131, 430, 568
BmiI	GGNNCC	2 cut(s)	50, 924
BmrFI	CCNGG	1 cut(s)	33
BmrI	ACTGGG	1 cut(s)	611
BmsI	GCATC	1 cut(s)	205
BmuI	ACTGGG	1 cut(s)	611
BpiI	GAAGAC	2 cut(s)	339, 660
BsaHI	GRCGYC	1 cut(s)	399
BsaJI	CCNNGG	2 cut(s)	31, 426
Bse1I	ACTGG	7 cut(s)	52, 443, 474, 570, 584, 617, 914
BseBI	CCWGG	1 cut(s)	33
BseDI	CCNNGG	2 cut(s)	31, 426
BseNI	ACTGG	7 cut(s)	52, 443, 474, 570, 584, 617, 914
BseRI	GAGGAG	9 cut(s)	711, 726, 729, 732, 741, 744, 810, 813, 834
BshFI	GGCC	2 cut(s)	30, 569
BshNI	GGYRCC	1 cut(s)	48
BsmAI	GTCTC	1 cut(s)	700
BsnI	GGCC	2 cut(s)	30, 569
Bsp143I	GATC	3 cut(s)	61, 543, 904
BspACI	CCGC	2 cut(s)	746, 827
BspANI	GGCC	2 cut(s)	30, 569
BspHI	TCATGA	1 cut(s)	87
BspLI	GGNNCC	2 cut(s)	50, 924
BspQI	GCTCTTC	1 cut(s)	225
BspT107I	GGYRCC	1 cut(s)	48
BsrI	ACTGG	7 cut(s)	52, 443, 474, 570, 584, 617, 914
BssECI	CCNNGG	2 cut(s)	31, 426
BssMI	GATC	3 cut(s)	61, 543, 904
BssNI	GRCGYC	1 cut(s)	399
BssT1I	CCWWGG	1 cut(s)	426
Bst2UI	CCWGG	1 cut(s)	33
Bst4CI	ACNGT	3 cut(s)	85, 209, 686
Bst6I	CTCTTC	3 cut(s)	225, 294, 735
BstACI	GRCGYC	1 cut(s)	399
BstKTI	GATC	3 cut(s)	64, 546, 907
BstMAI	GTCTC	1 cut(s)	700
BstMBI	GATC	3 cut(s)	61, 543, 904
BstMWI	GCNNNNNNNGC	1 cut(s)	302
BstNI	CCWGG	1 cut(s)	33
BstNSI	RCATGY	1 cut(s)	496
BstSCI	CCNGG	1 cut(s)	31
BstV2I	GAAGAC	2 cut(s)	339, 660
BstXI	CCANNNNNNTGG	1 cut(s)	591
BsuI	GTATCC	1 cut(s)	246
BsuRI	GGCC	2 cut(s)	30, 569
BtsIMutI	CAGTG	4 cut(s)	481, 563, 591, 907
CaiI	CAGNNNCTG	1 cut(s)	937
CciI	TCATGA	1 cut(s)	87
Cfr13I	GGNCC	4 cut(s)	29, 131, 430, 568
CseI	GACGC	1 cut(s)	388
Csp6I	GTAC	7 cut(s)	25, 49, 284, 448, 538, 620, 759
CviAII	CATG	8 cut(s)	65, 88, 159, 310, 493, 547, 658, 764
CviQI	GTAC	7 cut(s)	25, 49, 284, 448, 538, 620, 759
DpnI	GATC	3 cut(s)	63, 545, 906
DpnII	GATC	3 cut(s)	61, 543, 904
Eam1104I	CTCTTC	3 cut(s)	225, 294, 735
EarI	CTCTTC	3 cut(s)	225, 294, 735
EciI	GGCGGA	2 cut(s)	735, 816
Eco130I	CCWWGG	1 cut(s)	426
Eco47I	GGWCC	2 cut(s)	131, 430
EcoRII	CCWGG	1 cut(s)	31
EcoT14I	CCWWGG	1 cut(s)	426
ErhI	CCWWGG	1 cut(s)	426
FaeI	CATG	8 cut(s)	68, 91, 162, 313, 496, 550, 661, 767
FalI	AAGNNNNNCTT	6 cut(s)	111, 143, 204, 236, 564, 596
FatI	CATG	8 cut(s)	64, 87, 158, 309, 492, 546, 657, 763
FauNDI	CATATG	3 cut(s)	40, 775, 865
FbaI	TGATCA	2 cut(s)	61, 904
FspBI	CTAG	1 cut(s)	434
HaeIII	GGCC	2 cut(s)	30, 569
HgaI	GACGC	1 cut(s)	388
Hin1I	GRCGYC	1 cut(s)	399
Hin1II	CATG	8 cut(s)	68, 91, 162, 313, 496, 550, 661, 767
HinfI	GANTC	1 cut(s)	627
HphI	GGTGA	2 cut(s)	507, 605
Hpy188I	TCNGA	1 cut(s)	705
Hpy188III	TCNNGA	6 cut(s)	59, 88, 197, 250, 331, 373
HpyAV	CCTTC	4 cut(s)	97, 735, 801, 816
HpyCH4III	ACNGT	3 cut(s)	85, 209, 686
HpyCH4IV	ACGT	1 cut(s)	610
HpyCH4V	TGCA	3 cut(s)	158, 392, 577
HpyF10VI	GCNNNNNNNGC	1 cut(s)	302
HpySE526I	ACGT	1 cut(s)	610
Hsp92I	GRCGYC	1 cut(s)	399
Hsp92II	CATG	8 cut(s)	68, 91, 162, 313, 496, 550, 661, 767
KpnI	GGTACC	1 cut(s)	52
Ksp22I	TGATCA	2 cut(s)	61, 904
Kzo9I	GATC	3 cut(s)	61, 543, 904
LguI	GCTCTTC	1 cut(s)	225
LweI	GCATC	1 cut(s)	205
MaeI	CTAG	1 cut(s)	434
MaeII	ACGT	1 cut(s)	610
MaeIII	GTNAC	2 cut(s)	513, 611
MalI	GATC	3 cut(s)	63, 545, 906
MboI	GATC	3 cut(s)	61, 543, 904
MfeI	CAATTG	1 cut(s)	882
MluCI	AATT	4 cut(s)	166, 367, 480, 882
MroXI	GAANNNNTTC	1 cut(s)	927
MseI	TTAA	6 cut(s)	269, 387, 486, 699, 849, 900
MslI	CAYNNNNRTG	1 cut(s)	314
MspR9I	CCNGG	1 cut(s)	33
MunI	CAATTG	1 cut(s)	882
MvaI	CCWGG	1 cut(s)	33
MwoI	GCNNNNNNNGC	1 cut(s)	302
NdeI	CATATG	3 cut(s)	40, 775, 865
NdeII	GATC	3 cut(s)	61, 543, 904
NlaIII	CATG	8 cut(s)	68, 91, 162, 313, 496, 550, 661, 767
NlaIV	GGNNCC	2 cut(s)	50, 924
NmuCI	GTSAC	2 cut(s)	513, 611
NspI	RCATGY	1 cut(s)	496
PagI	TCATGA	1 cut(s)	87
PciI	ACATGT	1 cut(s)	492
PciSI	GCTCTTC	1 cut(s)	225
PdmI	GAANNNNTTC	1 cut(s)	927
PfeI	GAWTC	1 cut(s)	627
PscI	ACATGT	1 cut(s)	492
Psp6I	CCWGG	1 cut(s)	31
PspGI	CCWGG	1 cut(s)	31
PspN4I	GGNNCC	2 cut(s)	50, 924
PspPI	GGNCC	4 cut(s)	29, 131, 430, 568
PstNI	CAGNNNCTG	1 cut(s)	937
RsaI	GTAC	7 cut(s)	26, 50, 285, 449, 539, 621, 760
RsaNI	GTAC	7 cut(s)	25, 49, 284, 448, 538, 620, 759
RseI	CAYNNNNRTG	1 cut(s)	314
SapI	GCTCTTC	1 cut(s)	225
SaqAI	TTAA	6 cut(s)	269, 387, 486, 699, 849, 900
Sau3AI	GATC	3 cut(s)	61, 543, 904
Sau96I	GGNCC	4 cut(s)	29, 131, 430, 568
ScrFI	CCNGG	1 cut(s)	33
SfaNI	GCATC	1 cut(s)	205
SinI	GGWCC	2 cut(s)	131, 430
SmiMI	CAYNNNNRTG	1 cut(s)	314
Sse9I	AATT	4 cut(s)	166, 367, 480, 882
SsiI	CCGC	2 cut(s)	746, 827
SspI	AATATT	2 cut(s)	327, 531
SspMI	CTAG	1 cut(s)	434
StyD4I	CCNGG	1 cut(s)	31
StyI	CCWWGG	1 cut(s)	426
TaaI	ACNGT	3 cut(s)	85, 209, 686
TaiI	ACGT	1 cut(s)	613
TaqI	TCGA	1 cut(s)	918
TasI	AATT	4 cut(s)	166, 367, 480, 882
TatI	WGTACW	3 cut(s)	447, 537, 619
TfiI	GAWTC	1 cut(s)	627
Tru1I	TTAA	6 cut(s)	269, 387, 486, 699, 849, 900
Tru9I	TTAA	6 cut(s)	269, 387, 486, 699, 849, 900
TscAI	CASTG	4 cut(s)	481, 570, 591, 914
TseFI	GTSAC	2 cut(s)	513, 611
Tsp45I	GTSAC	2 cut(s)	513, 611
TspDTI	ATGAA	3 cut(s)	104, 298, 677
TspRI	CASTG	4 cut(s)	481, 570, 591, 914
VpaK11BI	GGWCC	2 cut(s)	131, 430
XapI	RAATTY	1 cut(s)	367
XceI	RCATGY	1 cut(s)	496
XcmI	CCANNNNNNNNNTGG	2 cut(s)	125, 642
XmnI	GAANNNNTTC	1 cut(s)	927
XspI	CTAG	1 cut(s)	434

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.