Rmu_sc0003755.1_g000009

plastid-lipid-associated protein 13

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003755.1
OG0004957
Physical Location & Seq
Forward (+)
39170 .. 44723
5554 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1017 bp
ctgacttcacgcttccctcgcgcccttgaaccaccaccccacgcatctctcactctcccatcacccatagaatttcttctcttcaatggcgaccttactgggccagctctctgcgatttccgccatcggctcctgttgctcctcctcttcatcttcctcctcctccctctcttccaccaccaccacttcactggtttccgtcgccacctggccgcagtctgcccggaaactccccggagaccggagccggagtctccagaggtccgttgtccgagcaatggttcagacggtccccggagctccggggaaatggagaggctctccgctaaagaatcactgcttctcgccttcaaggatgctgggggttttgaggcattagtcactggaaagacgacagacatgcagcggattgatgtcaatgagaggattactgctttggagcgggtcaatccaacaccccgccctacaacgtcgccctttttggaaggacgatggaatttcgagtggtttgggtccggaagcccaggtctatttgctgctagatttctattagagagatttccttcgacagtggccagtttgtcaaaaatggaggtgctcatcaaggaagggaatgcaaagattacagcaaacatgaaaatattgaactcgatagaaagcaaattttctctgtcaaccaagttgtctgtggagggaccagttagaatgaaagaggaatatgttgaggggattcttgacacaccaacagttattgaagaaacaatacctgaacagctaaaaggtgcacttggtcaggcagtcaacacagtgcaacagcttcctgttccaattagggatgccttcgccagtgggttgagagttcctttaactggagctttcgagagactcttcatgatttcctatcttgatatggagatactgatcataagagatgctgctggaattcctgaaatacttacaaggttagattcaccctcatctcccctggcagaaaccatcacggagtatgagagctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAP_fibrillin

Protein Analysis

338

Amino Acids

37.52

Weight (kDa)

5.63

Isoelectric Point (pI)

50.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAP_fibrillin PF04755 131 - 314 5.8e-11 PAP_fibrillin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 442
AccII CGCG 1 cut(s) 21
AccIII TCCGGA 1 cut(s) 515
AciI CCGC 6 cut(s) 121, 213, 324, 406, 442, 460
AcoI YGGCCR 2 cut(s) 210, 573
AcsI RAATTY 4 cut(s) 71, 496, 662, 942
AfiI CCNNNNNNNGG 3 cut(s) 241, 278, 869
AgsI TTSAA 5 cut(s) 29, 85, 352, 646, 755
AjnI CCWGG 3 cut(s) 207, 523, 984
AluBI AGCT 6 cut(s) 107, 300, 775, 817, 875, 1014
AluI AGCT 6 cut(s) 107, 300, 775, 817, 875, 1014
Alw21I GWGCWC 3 cut(s) 302, 600, 787
Alw26I GTCTC 3 cut(s) 232, 258, 877
Alw44I GTGCAC 1 cut(s) 783
Aor13HI TCCGGA 1 cut(s) 515
AoxI GGCC 3 cut(s) 101, 210, 573
ApaLI GTGCAC 1 cut(s) 783
ApeKI GCWGC 3 cut(s) 403, 536, 935
ApoI RAATTY 4 cut(s) 71, 496, 662, 942
Asp700I GAANNNNTTC 1 cut(s) 75
AspLEI GCGC 1 cut(s) 23
AspS9I GGNCC 5 cut(s) 101, 262, 290, 513, 695
AsuC2I CCSGG 4 cut(s) 224, 235, 295, 304
AsuHPI GGTGA 2 cut(s) 54, 963
AvaII GGWCC 4 cut(s) 262, 290, 513, 695
BaeGI GKGCMC 1 cut(s) 787
BalI TGGCCA 1 cut(s) 575
BanII GRGCYC 1 cut(s) 302
BarI GAAGNNNNNNTAC 2 cut(s) 747, 779
Bbv12I GWGCWC 3 cut(s) 302, 600, 787
BbvI GCAGC 3 cut(s) 415, 523, 922
BccI CCATC 4 cut(s) 67, 132, 486, 1004
BcgI CGANNNNNNTGC 2 cut(s) 382, 416
BciT130I CCWGG 3 cut(s) 209, 525, 986
BclI TGATCA 1 cut(s) 921
BcnI CCSGG 4 cut(s) 224, 235, 295, 304
BcoDI GTCTC 3 cut(s) 232, 258, 877
BfaI CTAG 1 cut(s) 540
BisI GCNGC 4 cut(s) 213, 404, 537, 936
BlsI GCNGC 4 cut(s) 214, 405, 538, 937
Bme1390I CCNGG 7 cut(s) 209, 224, 235, 295, 304, 525, 986
Bme18I GGWCC 4 cut(s) 262, 290, 513, 695
BmgT120I GGNCC 5 cut(s) 101, 262, 290, 513, 695
BmiI GGNNCC 5 cut(s) 131, 246, 292, 514, 696
BmrFI CCNGG 7 cut(s) 209, 224, 235, 295, 304, 525, 986
BmrI ACTGGG 1 cut(s) 108
BmsI GCATC 4 cut(s) 53, 346, 826, 922
BmuI ACTGGG 1 cut(s) 108
BplI GAGNNNNNCTC 2 cut(s) 305, 337
BpmI CTGGAG 2 cut(s) 240, 891
BpuMI CCSGG 4 cut(s) 224, 235, 295, 304
BsaBI GATNNNNATC 1 cut(s) 920
BsaI GGTCTC 1 cut(s) 232
BsaJI CCNNGG 5 cut(s) 233, 293, 303, 523, 984
BsaWI WCCGGW 2 cut(s) 241, 515
BsaXI ACNNNNNCTCC 2 cut(s) 236, 266
Bsc4I CCNNNNNNNGG 3 cut(s) 241, 278, 869
Bse1I ACTGG 7 cut(s) 103, 196, 388, 576, 698, 846, 874
Bse3DI GCAATG 1 cut(s) 283
Bse8I GATNNNNATC 1 cut(s) 920
BseAI TCCGGA 1 cut(s) 515
BseBI CCWGG 3 cut(s) 209, 525, 986
BseDI CCNNGG 5 cut(s) 233, 293, 303, 523, 984
BseGI GGATG 2 cut(s) 361, 841
BseJI GATNNNNATC 1 cut(s) 920
BseLI CCNNNNNNNGG 3 cut(s) 241, 278, 869
BseMI GCAATG 1 cut(s) 283
BseNI ACTGG 7 cut(s) 103, 196, 388, 576, 698, 846, 874
BseRI GAGGAG 4 cut(s) 131, 134, 149, 152
BseSI GKGCMC 1 cut(s) 787
BseXI GCAGC 3 cut(s) 415, 523, 922
BseYI CCCAGC 1 cut(s) 359
Bsh1236I CGCG 1 cut(s) 21
BshFI GGCC 3 cut(s) 103, 212, 575
BsiHKAI GWGCWC 3 cut(s) 302, 600, 787
BsiSI CCGG 7 cut(s) 224, 235, 242, 248, 295, 303, 516
BslFI GGGAC 2 cut(s) 276, 708
BslI CCNNNNNNNGG 3 cut(s) 241, 278, 869
BsmAI GTCTC 3 cut(s) 232, 258, 877
BsmFI GGGAC 2 cut(s) 276, 708
BsmI GAATGC 1 cut(s) 619
BsnI GGCC 3 cut(s) 103, 212, 575
Bso31I GGTCTC 1 cut(s) 232
Bsp1286I GDGCHC 3 cut(s) 302, 600, 787
Bsp13I TCCGGA 1 cut(s) 515
Bsp143I GATC 1 cut(s) 921
BspACI CCGC 6 cut(s) 121, 213, 324, 406, 442, 460
BspANI GGCC 3 cut(s) 103, 212, 575
BspEI TCCGGA 1 cut(s) 515
BspFNI CGCG 1 cut(s) 21
BspHI TCATGA 1 cut(s) 891
BspLI GGNNCC 5 cut(s) 131, 246, 292, 514, 696
BspTNI GGTCTC 1 cut(s) 232
BsrBI CCGCTC 1 cut(s) 442
BsrDI GCAATG 1 cut(s) 283
BsrI ACTGG 7 cut(s) 103, 196, 388, 576, 698, 846, 874
BssECI CCNNGG 5 cut(s) 233, 293, 303, 523, 984
BssMI GATC 1 cut(s) 921
Bst2UI CCWGG 3 cut(s) 209, 525, 986
Bst4CI ACNGT 4 cut(s) 290, 571, 748, 808
Bst6I CTCTTC 4 cut(s) 86, 152, 176, 893
BstC8I GCNNGC 1 cut(s) 105
BstF5I GGATG 2 cut(s) 361, 841
BstFNI CGCG 1 cut(s) 21
BstHHI GCGC 1 cut(s) 23
BstKTI GATC 1 cut(s) 924
BstMAI GTCTC 3 cut(s) 232, 258, 877
BstMBI GATC 1 cut(s) 921
BstMWI GCNNNNNNNGC 3 cut(s) 18, 120, 136
BstNI CCWGG 3 cut(s) 209, 525, 986
BstNSI RCATGY 1 cut(s) 403
BstSCI CCNGG 7 cut(s) 207, 222, 233, 293, 302, 523, 984
BstSLI GKGCMC 1 cut(s) 787
BstUI CGCG 1 cut(s) 21
BstV1I GCAGC 3 cut(s) 415, 523, 922
BstXI CCANNNNNNTGG 1 cut(s) 191
BsuRI GGCC 3 cut(s) 103, 212, 575
BtsCI GGATG 2 cut(s) 361, 841
BtsI GCAGTG 1 cut(s) 335
BtsIMutI CAGTG 6 cut(s) 189, 335, 381, 576, 813, 853
Cac8I GCNNGC 1 cut(s) 105
CciI TCATGA 1 cut(s) 891
CfoI GCGC 1 cut(s) 23
Cfr13I GGNCC 5 cut(s) 101, 262, 290, 513, 695
CviAII CATG 3 cut(s) 400, 634, 892
DpnI GATC 1 cut(s) 923
DpnII GATC 1 cut(s) 921
EaeI YGGCCR 2 cut(s) 210, 573
Eam1104I CTCTTC 4 cut(s) 86, 152, 176, 893
EarI CTCTTC 4 cut(s) 86, 152, 176, 893
EciI GGCGGA 1 cut(s) 110
Ecl136II GAGCTC 1 cut(s) 300
Eco24I GRGCYC 1 cut(s) 302
Eco31I GGTCTC 1 cut(s) 232
Eco47I GGWCC 4 cut(s) 262, 290, 513, 695
Eco53kI GAGCTC 1 cut(s) 300
EcoICRI GAGCTC 1 cut(s) 300
EcoRI GAATTC 1 cut(s) 942
EcoRII CCWGG 3 cut(s) 207, 523, 984
EcoT38I GRGCYC 1 cut(s) 302
FaeI CATG 3 cut(s) 403, 637, 895
FaiI YATR 8 cut(s) 68, 401, 635, 720, 893, 911, 926, 1008
FalI AAGNNNNNCTT 2 cut(s) 771, 803
FaqI GGGAC 2 cut(s) 276, 708
FatI CATG 3 cut(s) 399, 633, 891
FauI CCCGC 2 cut(s) 435, 467
FbaI TGATCA 1 cut(s) 921
Fnu4HI GCNGC 4 cut(s) 213, 404, 537, 936
FokI GGATG 2 cut(s) 368, 848
FriOI GRGCYC 1 cut(s) 302
Fsp4HI GCNGC 4 cut(s) 213, 404, 537, 936
FspBI CTAG 1 cut(s) 540
GlaI GCGC 1 cut(s) 22
GluI GCNGC 4 cut(s) 213, 404, 537, 936
GsaI CCCAGC 1 cut(s) 363
GsuI CTGGAG 2 cut(s) 240, 891
HaeIII GGCC 3 cut(s) 103, 212, 575
HapII CCGG 7 cut(s) 224, 235, 242, 248, 295, 303, 516
HhaI GCGC 1 cut(s) 23
Hin1II CATG 3 cut(s) 403, 637, 895
Hin6I GCGC 1 cut(s) 21
HinP1I GCGC 1 cut(s) 21
HincII GTYRAC 2 cut(s) 675, 802
HindII GTYRAC 2 cut(s) 675, 802
HinfI GANTC 5 cut(s) 251, 332, 730, 885, 968
HpaII CCGG 7 cut(s) 224, 235, 242, 248, 295, 303, 516
HphI GGTGA 2 cut(s) 54, 963
Hpy166II GTNNAC 3 cut(s) 675, 785, 802
Hpy188I TCNGA 2 cut(s) 273, 286
Hpy188III TCNNGA 7 cut(s) 257, 516, 734, 880, 892, 905, 947
Hpy8I GTNNAC 3 cut(s) 675, 785, 802
Hpy99I CGWCG 2 cut(s) 204, 475
HpyAV CCTTC 5 cut(s) 358, 479, 573, 602, 850
HpyCH4III ACNGT 4 cut(s) 290, 571, 748, 808
HpyCH4IV ACGT 1 cut(s) 470
HpyCH4V TGCA 4 cut(s) 403, 617, 785, 811
HpyF10VI GCNNNNNNNGC 3 cut(s) 18, 120, 136
HpySE526I ACGT 1 cut(s) 470
Hsp92II CATG 3 cut(s) 403, 637, 895
HspAI GCGC 1 cut(s) 21
Kpn2I TCCGGA 1 cut(s) 515
Ksp22I TGATCA 1 cut(s) 921
Kzo9I GATC 1 cut(s) 921
LmnI GCTCC 7 cut(s) 135, 144, 244, 297, 305, 439, 872
Lsp1109I GCAGC 3 cut(s) 415, 523, 922
LweI GCATC 4 cut(s) 53, 346, 826, 922
MaeI CTAG 1 cut(s) 540
MaeII ACGT 1 cut(s) 470
MaeIII GTNAC 1 cut(s) 379
MalI GATC 1 cut(s) 923
MbiI CCGCTC 1 cut(s) 442
MboI GATC 1 cut(s) 921
MboII GAAGA 7 cut(s) 68, 73, 139, 145, 163, 767, 880
MhlI GDGCHC 3 cut(s) 302, 600, 787
MlsI TGGCCA 1 cut(s) 575
MluCI AATT 5 cut(s) 71, 496, 662, 828, 942
MluNI TGGCCA 1 cut(s) 575
MlyI GAGTC 2 cut(s) 260, 879
MmeI TCCRAC 1 cut(s) 476
Mox20I TGGCCA 1 cut(s) 575
MroI TCCGGA 1 cut(s) 515
MroXI GAANNNNTTC 1 cut(s) 75
MscI TGGCCA 1 cut(s) 575
MseI TTAA 1 cut(s) 866
Msp20I TGGCCA 1 cut(s) 575
MspA1I CMGCKG 1 cut(s) 406
MspI CCGG 7 cut(s) 224, 235, 242, 248, 295, 303, 516
MspR9I CCNGG 7 cut(s) 209, 224, 235, 295, 304, 525, 986
Mva1269I GAATGC 1 cut(s) 619
MvaI CCWGG 3 cut(s) 209, 525, 986
MvnI CGCG 1 cut(s) 21
MwoI GCNNNNNNNGC 3 cut(s) 18, 120, 136
NciI CCSGG 4 cut(s) 224, 235, 295, 304
NdeII GATC 1 cut(s) 921
NlaIII CATG 3 cut(s) 403, 637, 895
NlaIV GGNNCC 5 cut(s) 131, 246, 292, 514, 696
NmuCI GTSAC 1 cut(s) 379
NspI RCATGY 1 cut(s) 403
PagI TCATGA 1 cut(s) 891
PctI GAATGC 1 cut(s) 619
PdmI GAANNNNTTC 1 cut(s) 75
PfeI GAWTC 3 cut(s) 332, 730, 968
PkrI GCNGC 4 cut(s) 214, 405, 538, 937
PleI GAGTC 2 cut(s) 259, 879
PpsI GAGTC 2 cut(s) 259, 879
Psp124BI GAGCTC 1 cut(s) 302
Psp6I CCWGG 3 cut(s) 207, 523, 984
PspFI CCCAGC 1 cut(s) 359
PspGI CCWGG 3 cut(s) 207, 523, 984
PspN4I GGNNCC 5 cut(s) 131, 246, 292, 514, 696
PspPI GGNCC 5 cut(s) 101, 262, 290, 513, 695
SacI GAGCTC 1 cut(s) 302
SaqAI TTAA 1 cut(s) 866
SatI GCNGC 4 cut(s) 213, 404, 537, 936
Sau3AI GATC 1 cut(s) 921
Sau96I GGNCC 5 cut(s) 101, 262, 290, 513, 695
SchI GAGTC 2 cut(s) 260, 879
ScrFI CCNGG 7 cut(s) 209, 224, 235, 295, 304, 525, 986
SduI GDGCHC 3 cut(s) 302, 600, 787
SfaNI GCATC 4 cut(s) 53, 346, 826, 922
SinI GGWCC 4 cut(s) 262, 290, 513, 695
Sse9I AATT 5 cut(s) 71, 496, 662, 828, 942
SsiI CCGC 6 cut(s) 121, 213, 324, 406, 442, 460
SspI AATATT 1 cut(s) 642
SspMI CTAG 1 cut(s) 540
SstI GAGCTC 1 cut(s) 302
StyD4I CCNGG 7 cut(s) 207, 222, 233, 293, 302, 523, 984
TaaI ACNGT 4 cut(s) 290, 571, 748, 808
TaiI ACGT 1 cut(s) 473
TaqI TCGA 4 cut(s) 501, 566, 650, 879
TasI AATT 5 cut(s) 71, 496, 662, 828, 942
TauI GCSGC 1 cut(s) 215
TfiI GAWTC 3 cut(s) 332, 730, 968
Tru1I TTAA 1 cut(s) 866
Tru9I TTAA 1 cut(s) 866
TscAI CASTG 6 cut(s) 196, 342, 388, 576, 813, 853
TseFI GTSAC 1 cut(s) 379
TseI GCWGC 3 cut(s) 403, 536, 935
Tsp45I GTSAC 1 cut(s) 379
TspDTI ATGAA 4 cut(s) 139, 650, 722, 880
TspGWI ACGGA 3 cut(s) 188, 254, 1016
TspRI CASTG 6 cut(s) 196, 342, 388, 576, 813, 853
VneI GTGCAC 1 cut(s) 783
VpaK11BI GGWCC 4 cut(s) 262, 290, 513, 695
XapI RAATTY 4 cut(s) 71, 496, 662, 942
XceI RCATGY 1 cut(s) 403
XcmI CCANNNNNNNNNTGG 2 cut(s) 188, 685
XmnI GAANNNNTTC 1 cut(s) 75
XspI CTAG 1 cut(s) 540
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.