Rmu_sc0004304.1_g000004

Protein odr-4 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004304.1
OG0003215
Physical Location & Seq
Forward (+)
13906 .. 22281
8376 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1116 bp
atggacttcgataaccttctcgatttcaagaacgacgacccactcctcaaccctctgctaagaaaaggtgggtcttctcttctcttcgaattggtgaggtcttggttgccaagtgggaaggttaagcctgtgcggttgaatgatgtgaactgggggattagttggaaagatcggcgaattccattattcgtcataggcaagctcagctctaccctcgaccgaggcttcgtctttgatttggtcccgactccgcctaacgacgccggagctccgccttgttccctcgtcgagcccgataagagaaagggccccaagcccaaatctcagtcctctgattcccactctctctcaattgacaatgattgggtcgccgaacatgctcgtcaggtgtcaagaatgttggtgggcggcatgaaggtggttgggatttacatttggattagcgataatgcattcaagaattcaaacattgtgctttgccagactgtaatgggagttgccaaagctgcgccgctctctgagagtgattgggatgagagacttcttattcacatttgctatagtccaaggagatggacatgtcgaaattgtatggtgacttcaaatattacatcaagcagcctaagaccttgtgacttcaaaatgggaagggtcctagcttcccttcaaagatttaggtgcatgtacaacttcgatattaggttacctatatctcacaagaattcatcaaatgttcagactatgagtgaagctcttcgtcatgaaatttcaattcatgctaaatatttaaaaagtgcaaaagccacgctggatggaaatttggttgtacacaatgatctatgcacatcagatggtttgcatgaagtagaattgctgttaccatttgtggaagatactgaagtatgcagccaaaaagatgctcttggtgttcttgcttttagtggttctgtttgttcctttgcatacttaaatattcgagaaccaatttcacaagctgttactgatataaagggtagttttgagagagtgacttggccttatggttctggccttctgggagatggagaaaatctgaaaaaggaagaagaggactggttgcagaagaggagttcataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ODR4-like

Protein Analysis

371

Amino Acids

41.55

Weight (kDa)

7.55

Isoelectric Point (pI)

47.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ODR4-like PF14778 64 - 337 4e-70 Odorant response abnormal 4-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 514
AciI CCGC 5 cut(s) 133, 251, 272, 408, 512
AcsI RAATTY 5 cut(s) 177, 460, 721, 765, 817
AcuI CTGAAG 1 cut(s) 918
AcyI GRCGYC 1 cut(s) 261
AfaI GTAC 2 cut(s) 686, 828
AflIII ACRYGT 1 cut(s) 578
AgsI TTSAA 8 cut(s) 28, 139, 457, 465, 603, 640, 668, 771
AluBI AGCT 7 cut(s) 202, 207, 269, 506, 659, 752, 995
AluI AGCT 7 cut(s) 202, 207, 269, 506, 659, 752, 995
Alw21I GWGCWC 1 cut(s) 271
Alw26I GTCTC 1 cut(s) 532
AoxI GGCC 3 cut(s) 307, 1034, 1048
ApaI GGGCCC 1 cut(s) 311
ApeKI GCWGC 3 cut(s) 506, 618, 906
ApoI RAATTY 5 cut(s) 177, 460, 721, 765, 817
ArsI GACNNNNNNTTYG 2 cut(s) 209, 241
Asp700I GAANNNNTTC 1 cut(s) 753
AspLEI GCGC 1 cut(s) 511
AspS9I GGNCC 4 cut(s) 241, 307, 308, 652
AsuHPI GGTGA 2 cut(s) 106, 607
AsuII TTCGAA 1 cut(s) 87
AvaII GGWCC 2 cut(s) 241, 652
BaeGI GKGCMC 1 cut(s) 311
BaeI ACNNNNGTAYC 2 cut(s) 885, 918
BanII GRGCYC 3 cut(s) 271, 294, 311
BarI GAAGNNNNNNTAC 2 cut(s) 583, 615
BbsI GAAGAC 1 cut(s) 66
Bbv12I GWGCWC 1 cut(s) 271
BbvI GCAGC 3 cut(s) 493, 630, 918
BccI CCATC 4 cut(s) 567, 806, 845, 1055
BcoDI GTCTC 1 cut(s) 532
BfaI CTAG 1 cut(s) 656
BfmI CTRYAG 1 cut(s) 559
BisI GCNGC 5 cut(s) 409, 507, 512, 619, 907
BlpI GCTNAGC 1 cut(s) 203
BlsI GCNGC 5 cut(s) 410, 508, 513, 620, 908
Bme18I GGWCC 2 cut(s) 241, 652
BmgT120I GGNCC 4 cut(s) 241, 307, 308, 652
BmiI GGNNCC 4 cut(s) 243, 309, 310, 653
BmrI ACTGGG 1 cut(s) 160
BmsI GCATC 1 cut(s) 907
BmuI ACTGGG 1 cut(s) 160
BpiI GAAGAC 1 cut(s) 66
BplI GAGNNNNNCTC 2 cut(s) 736, 768
Bpu1102I GCTNAGC 1 cut(s) 203
Bpu14I TTCGAA 1 cut(s) 87
BsaHI GRCGYC 1 cut(s) 261
BsaJI CCNNGG 2 cut(s) 220, 566
Bse1I ACTGG 2 cut(s) 155, 1097
BseDI CCNNGG 2 cut(s) 220, 566
BseGI GGATG 2 cut(s) 538, 817
BseMII CTCAG 3 cut(s) 217, 338, 510
BseNI ACTGG 2 cut(s) 155, 1097
BseRI GAGGAG 1 cut(s) 35
BseSI GKGCMC 1 cut(s) 311
BseXI GCAGC 3 cut(s) 493, 630, 918
Bsh1285I CGRYCG 1 cut(s) 220
BshFI GGCC 3 cut(s) 309, 1036, 1050
BsiEI CGRYCG 1 cut(s) 220
BsiHKAI GWGCWC 1 cut(s) 271
BsiSI CCGG 1 cut(s) 264
BslFI GGGAC 1 cut(s) 227
BsmAI GTCTC 1 cut(s) 532
BsmFI GGGAC 1 cut(s) 227
BsmI GAATGC 1 cut(s) 452
BsnI GGCC 3 cut(s) 309, 1036, 1050
Bsp119I TTCGAA 1 cut(s) 87
Bsp120I GGGCCC 1 cut(s) 307
Bsp1286I GDGCHC 3 cut(s) 271, 294, 311
Bsp1407I TGTACA 2 cut(s) 684, 826
Bsp143I GATC 2 cut(s) 169, 835
Bsp1720I GCTNAGC 1 cut(s) 203
BspACI CCGC 5 cut(s) 133, 251, 272, 408, 512
BspANI GGCC 3 cut(s) 309, 1036, 1050
BspCNI CTCAG 3 cut(s) 216, 337, 511
BspHI TCATGA 1 cut(s) 760
BspLI GGNNCC 4 cut(s) 243, 309, 310, 653
BspQI GCTCTTC 1 cut(s) 759
BspT104I TTCGAA 1 cut(s) 87
BsrBI CCGCTC 1 cut(s) 514
BsrGI TGTACA 2 cut(s) 684, 826
BsrI ACTGG 2 cut(s) 155, 1097
BssECI CCNNGG 2 cut(s) 220, 566
BssMI GATC 2 cut(s) 169, 835
BssNI GRCGYC 1 cut(s) 261
BssT1I CCWWGG 1 cut(s) 566
Bst4CI ACNGT 1 cut(s) 487
Bst6I CTCTTC 5 cut(s) 84, 89, 759, 1080, 1097
BstACI GRCGYC 1 cut(s) 261
BstAUI TGTACA 2 cut(s) 684, 826
BstBI TTCGAA 1 cut(s) 87
BstC8I GCNNGC 1 cut(s) 200
BstDEI CTNAG 5 cut(s) 59, 203, 324, 519, 623
BstEII GGTNACC 1 cut(s) 702
BstF5I GGATG 2 cut(s) 538, 817
BstHHI GCGC 1 cut(s) 511
BstKTI GATC 2 cut(s) 172, 838
BstMAI GTCTC 1 cut(s) 532
BstMBI GATC 2 cut(s) 169, 835
BstMCI CGRYCG 1 cut(s) 220
BstMWI GCNNNNNNNGC 3 cut(s) 204, 377, 506
BstNSI RCATGY 3 cut(s) 380, 582, 685
BstPI GGTNACC 1 cut(s) 702
BstSFI CTRYAG 1 cut(s) 559
BstSLI GKGCMC 1 cut(s) 311
BstV1I GCAGC 3 cut(s) 493, 630, 918
BstV2I GAAGAC 1 cut(s) 66
BstXI CCANNNNNNTGG 1 cut(s) 573
BsuRI GGCC 3 cut(s) 309, 1036, 1050
BtsCI GGATG 2 cut(s) 538, 817
Cac8I GCNNGC 1 cut(s) 200
CciI TCATGA 1 cut(s) 760
CfoI GCGC 1 cut(s) 511
Cfr13I GGNCC 4 cut(s) 241, 307, 308, 652
CseI GACGC 1 cut(s) 269
Csp6I GTAC 2 cut(s) 685, 827
CviAII CATG 7 cut(s) 377, 412, 579, 682, 761, 776, 860
CviQI GTAC 2 cut(s) 685, 827
DdeI CTNAG 5 cut(s) 59, 203, 324, 519, 623
DpnI GATC 2 cut(s) 171, 837
DpnII GATC 2 cut(s) 169, 835
DraI TTTAAA 1 cut(s) 789
Eam1104I CTCTTC 5 cut(s) 84, 89, 759, 1080, 1097
EarI CTCTTC 5 cut(s) 84, 89, 759, 1080, 1097
EciI GGCGGA 2 cut(s) 240, 261
Ecl136II GAGCTC 1 cut(s) 269
Eco130I CCWWGG 1 cut(s) 566
Eco24I GRGCYC 3 cut(s) 271, 294, 311
Eco47I GGWCC 2 cut(s) 241, 652
Eco53kI GAGCTC 1 cut(s) 269
Eco57I CTGAAG 1 cut(s) 918
Eco91I GGTNACC 1 cut(s) 702
EcoICRI GAGCTC 1 cut(s) 269
EcoO109I RGGNCCY 3 cut(s) 307, 308, 652
EcoO65I GGTNACC 1 cut(s) 702
EcoRI GAATTC 3 cut(s) 177, 460, 721
EcoT14I CCWWGG 1 cut(s) 566
EcoT22I ATGCAT 1 cut(s) 454
EcoT38I GRGCYC 3 cut(s) 271, 294, 311
ErhI CCWWGG 1 cut(s) 566
FaeI CATG 7 cut(s) 380, 415, 582, 685, 764, 779, 863
FalI AAGNNNNNCTT 2 cut(s) 906, 938
FaqI GGGAC 1 cut(s) 227
FatI CATG 7 cut(s) 376, 411, 578, 681, 760, 775, 859
Fnu4HI GCNGC 5 cut(s) 409, 507, 512, 619, 907
FokI GGATG 2 cut(s) 545, 824
FriOI GRGCYC 3 cut(s) 271, 294, 311
Fsp4HI GCNGC 5 cut(s) 409, 507, 512, 619, 907
FspBI CTAG 1 cut(s) 656
GlaI GCGC 1 cut(s) 510
GluI GCNGC 5 cut(s) 409, 507, 512, 619, 907
HaeIII GGCC 3 cut(s) 309, 1036, 1050
HapII CCGG 1 cut(s) 264
HgaI GACGC 1 cut(s) 269
HhaI GCGC 1 cut(s) 511
Hin1I GRCGYC 1 cut(s) 261
Hin1II CATG 7 cut(s) 380, 415, 582, 685, 764, 779, 863
Hin6I GCGC 1 cut(s) 509
HinP1I GCGC 1 cut(s) 509
HinfI GANTC 2 cut(s) 247, 335
HpaII CCGG 1 cut(s) 264
HphI GGTGA 2 cut(s) 106, 607
Hpy166II GTNNAC 2 cut(s) 148, 829
Hpy188I TCNGA 5 cut(s) 334, 520, 738, 850, 1074
Hpy188III TCNNGA 7 cut(s) 20, 28, 244, 393, 457, 761, 977
Hpy8I GTNNAC 2 cut(s) 148, 829
Hpy99I CGWCG 3 cut(s) 38, 263, 290
HpyAV CCTTC 6 cut(s) 26, 112, 409, 642, 674, 1061
HpyCH4III ACNGT 1 cut(s) 487
HpyCH4V TGCA 8 cut(s) 452, 681, 797, 843, 859, 906, 962, 1099
HpyF10VI GCNNNNNNNGC 3 cut(s) 204, 377, 506
HpyF3I CTNAG 5 cut(s) 59, 203, 324, 519, 623
Hsp92I GRCGYC 1 cut(s) 261
Hsp92II CATG 7 cut(s) 380, 415, 582, 685, 764, 779, 863
HspAI GCGC 1 cut(s) 509
Kzo9I GATC 2 cut(s) 169, 835
LguI GCTCTTC 1 cut(s) 759
LmnI GCTCC 2 cut(s) 266, 274
LpnPI CCDG 9 cut(s) 136, 141, 277, 371, 494, 794, 1032, 1040, 1078
Lsp1109I GCAGC 3 cut(s) 493, 630, 918
LweI GCATC 1 cut(s) 907
MaeI CTAG 1 cut(s) 656
MaeIII GTNAC 6 cut(s) 595, 632, 702, 876, 997, 1027
MalI GATC 2 cut(s) 171, 837
MbiI CCGCTC 1 cut(s) 514
MboI GATC 2 cut(s) 169, 835
MboII GAAGA 8 cut(s) 66, 71, 76, 746, 902, 1094, 1097, 1114
MfeI CAATTG 1 cut(s) 351
MhlI GDGCHC 3 cut(s) 271, 294, 311
MlyI GAGTC 1 cut(s) 241
MmeI TCCRAC 1 cut(s) 143
MnlI CCTC 9 cut(s) 56, 63, 90, 215, 224, 293, 340, 1081, 1098
Mph1103I ATGCAT 1 cut(s) 454
MroXI GAANNNNTTC 1 cut(s) 753
MseI TTAA 3 cut(s) 123, 788, 968
MslI CAYNNNNRTG 1 cut(s) 416
MspI CCGG 1 cut(s) 264
MunI CAATTG 1 cut(s) 351
Mva1269I GAATGC 1 cut(s) 452
MwoI GCNNNNNNNGC 3 cut(s) 204, 377, 506
NdeII GATC 2 cut(s) 169, 835
NlaIII CATG 7 cut(s) 380, 415, 582, 685, 764, 779, 863
NlaIV GGNNCC 4 cut(s) 243, 309, 310, 653
NmuCI GTSAC 3 cut(s) 595, 632, 1027
NsiI ATGCAT 1 cut(s) 454
NspI RCATGY 3 cut(s) 380, 582, 685
NspV TTCGAA 1 cut(s) 87
PagI TCATGA 1 cut(s) 760
PciI ACATGT 1 cut(s) 578
PciSI GCTCTTC 1 cut(s) 759
PcsI WCGNNNNNNNCGW 1 cut(s) 291
PctI GAATGC 1 cut(s) 452
PdmI GAANNNNTTC 1 cut(s) 753
PfeI GAWTC 1 cut(s) 335
PkrI GCNGC 5 cut(s) 410, 508, 513, 620, 908
PleI GAGTC 1 cut(s) 241
PpsI GAGTC 1 cut(s) 241
PpuMI RGGWCCY 1 cut(s) 652
PscI ACATGT 1 cut(s) 578
Psp124BI GAGCTC 1 cut(s) 271
Psp5II RGGWCCY 1 cut(s) 652
PspEI GGTNACC 1 cut(s) 702
PspN4I GGNNCC 4 cut(s) 243, 309, 310, 653
PspOMI GGGCCC 1 cut(s) 307
PspPI GGNCC 4 cut(s) 241, 307, 308, 652
PspPPI RGGWCCY 1 cut(s) 652
RsaI GTAC 2 cut(s) 686, 828
RsaNI GTAC 2 cut(s) 685, 827
RseI CAYNNNNRTG 1 cut(s) 416
SacI GAGCTC 1 cut(s) 271
SapI GCTCTTC 1 cut(s) 759
SaqAI TTAA 3 cut(s) 123, 788, 968
SatI GCNGC 5 cut(s) 409, 507, 512, 619, 907
Sau3AI GATC 2 cut(s) 169, 835
Sau96I GGNCC 4 cut(s) 241, 307, 308, 652
SchI GAGTC 1 cut(s) 241
SduI GDGCHC 3 cut(s) 271, 294, 311
SfaNI GCATC 1 cut(s) 907
SfcI CTRYAG 1 cut(s) 559
SfuI TTCGAA 1 cut(s) 87
SinI GGWCC 2 cut(s) 241, 652
SmiMI CAYNNNNRTG 1 cut(s) 416
SsiI CCGC 5 cut(s) 133, 251, 272, 408, 512
SspI AATATT 3 cut(s) 607, 785, 973
SspMI CTAG 1 cut(s) 656
SstI GAGCTC 1 cut(s) 271
StyI CCWWGG 1 cut(s) 566
TaaI ACNGT 1 cut(s) 487
TaqI TCGA 8 cut(s) 9, 21, 87, 216, 288, 583, 693, 976
TaqII GACCGA 1 cut(s) 234
TatI WGTACW 2 cut(s) 684, 826
TauI GCSGC 2 cut(s) 411, 514
TfiI GAWTC 1 cut(s) 335
Tru1I TTAA 3 cut(s) 123, 788, 968
Tru9I TTAA 3 cut(s) 123, 788, 968
TseFI GTSAC 3 cut(s) 595, 632, 1027
TseI GCWGC 3 cut(s) 506, 618, 906
Tsp45I GTSAC 3 cut(s) 595, 632, 1027
TspDTI ATGAA 6 cut(s) 428, 714, 764, 777, 876, 1101
VpaK11BI GGWCC 2 cut(s) 241, 652
XapI RAATTY 5 cut(s) 177, 460, 721, 765, 817
XceI RCATGY 3 cut(s) 380, 582, 685
XmnI GAANNNNTTC 1 cut(s) 753
XspI CTAG 1 cut(s) 656
Zsp2I ATGCAT 1 cut(s) 454
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.