Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004308.1

Orthogroup ID

OG0011993

Physical Location & Seq

Genomic Coordinates Reverse (-)

3286 .. 5254

Gene Structure 1969 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

atggcagtttttgagctttgtgggattgtttgttttcgtgttaaaacatataagcttaggttcaatgccacagcgttgcttgagaggctaaggaacaagaggcttgtgtatgttggggattccttgaatcgaaatcaatgggtttccatggtttgcctgatagagtcagctgttcctccagagctcaagtccatgtacaccaatggctccttgaccaccttcaaagcaactgaatacaatgccacaattgagttctattgggctccattgctagtggaatcgaactcagatcacccgatgaatcaccggttaccggaacggattgttagggttcaggcaattgaaaagcatgctagacattggactgatgcagactttcttgttttcaattcctatctttggtggagaaggtccatgatgagtgtcttgtggggatcttttgaaagctctgatggaatttacagagaggttgggatgcctagagtgtatgaaatggctctaaagacttggtcggattggttggaggtccatgttaatccaaacaagaccaagttgttctttgttagcatgtcacctactcaccaaagcgctgaagaatggggtgtgactactggcgagaattgctacggagaaactgaaccgattaaggaggagggctacaagggaaatgcatcggatccaaaaatgatgcgtgttgttgagaatgtacttggggagctgaaaacaagaggtttggatgtgcaaatactcaatataacgcaactctcagagtacagaaaagaaggtcatccatcaatttataggaagcagtgggatgctctaacagaaaagcaattagcaaaacctagcagttttgcagattgtatacattggtgcctccctggagtgccagacgtttggaatgagctcctctatgcttacatttttcaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009059 GO:0009987 GO:0010383 GO:0010410 GO:0012505 GO:0016051 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045491 GO:0045492 GO:0070589 GO:0070592 GO:0071554 GO:0071704 GO:0071840 GO:1901576 GO:1990538

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

310

Amino Acids

36.1

Weight (kDa)

6.47

Isoelectric Point (pI)

40.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PC-Esterase	PF13839	20 - 306	1.9e-93	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011993)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38320 AT2G38320
fragaria_vesca	FvH4_6g10730 FvH4_6g10730 FvH4_6g10730
malus_domestica	MD12G1179000.v1.1
prunus_persica	Prupe.6G284100_v2.0.a1
pyrus_communis	pycom12g16890
rosa_chinensis	RchiOBHm_Chr3g0461761
rosa_laevigata	RLG00000024902
rosa_multiflora	Rmu_sc0004308.1_g000002
rosa_roxburghii	Rroxscaffold_6G00417980
rosa_rugosa	Rorug03G0053300 Rorug03G0053400
rosa_samantha	Rh3AG111500 Rh3BG114500 Rh3CG116800 Rh3DG116500
rosa_wichuraiana	Rw3G009440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	873
AccI	GTMKAC	1 cut(s)	865
AclWI	GGATC	3 cut(s)	442, 671, 684
AcsI	RAATTY	1 cut(s)	456
AcuI	CTGAAG	1 cut(s)	612
AfaI	GTAC	3 cut(s)	197, 708, 773
AfeI	AGCGCT	1 cut(s)	589
AfiI	CCNNNNNNNGG	2 cut(s)	313, 399
AgeI	ACCGGT	1 cut(s)	306
AgsI	TTSAA	7 cut(s)	64, 127, 223, 344, 388, 443, 929
AjnI	CCWGG	1 cut(s)	880
AluBI	AGCT	7 cut(s)	16, 55, 170, 184, 447, 718, 907
AluI	AGCT	7 cut(s)	16, 55, 170, 184, 447, 718, 907
Alw21I	GWGCWC	2 cut(s)	186, 909
AlwI	GGATC	3 cut(s)	442, 671, 684
Aor51HI	AGCGCT	1 cut(s)	589
ApoI	RAATTY	1 cut(s)	456
AsiGI	ACCGGT	1 cut(s)	306
AspLEI	GCGC	1 cut(s)	590
AspS9I	GGNCC	2 cut(s)	411, 526
AsuHPI	GGTGA	4 cut(s)	284, 296, 564, 572
AvaII	GGWCC	2 cut(s)	411, 526
BamHI	GGATCC	1 cut(s)	676
BanI	GGYRCC	1 cut(s)	873
BanII	GRGCYC	3 cut(s)	186, 265, 909
Bbv12I	GWGCWC	2 cut(s)	186, 909
BccI	CCATC	2 cut(s)	446, 799
BciT130I	CCWGG	1 cut(s)	882
BfaI	CTAG	4 cut(s)	272, 354, 480, 846
BfoI	RGCGCY	1 cut(s)	591
Bme1390I	CCNGG	1 cut(s)	882
Bme18I	GGWCC	2 cut(s)	411, 526
BmgT120I	GGNCC	2 cut(s)	411, 526
BmiI	GGNNCC	4 cut(s)	208, 264, 678, 875
BmrFI	CCNGG	1 cut(s)	882
BmsI	GCATC	5 cut(s)	358, 465, 678, 680, 805
BpmI	CTGGAG	2 cut(s)	162, 903
Bpu10I	CCTNAGC	2 cut(s)	56, 89
BpuEI	CTTGAG	2 cut(s)	101, 170
BsaJI	CCNNGG	2 cut(s)	147, 880
BsaWI	WCCGGW	2 cut(s)	306, 313
Bsc4I	CCNNNNNNNGG	2 cut(s)	313, 399
Bse118I	RCCGGY	1 cut(s)	306
Bse1I	ACTGG	1 cut(s)	616
Bse3DI	GCAATG	1 cut(s)	266
BseBI	CCWGG	1 cut(s)	882
BseDI	CCNNGG	2 cut(s)	147, 880
BseGI	GGATG	4 cut(s)	480, 742, 787, 820
BseLI	CCNNNNNNNGG	2 cut(s)	313, 399
BseMI	GCAATG	1 cut(s)	266
BseMII	CTCAG	2 cut(s)	300, 780
BseNI	ACTGG	1 cut(s)	616
BseRI	GAGGAG	2 cut(s)	665, 899
BshNI	GGYRCC	1 cut(s)	873
BshTI	ACCGGT	1 cut(s)	306
BsiHKAI	GWGCWC	2 cut(s)	186, 909
BsiSI	CCGG	2 cut(s)	307, 314
BslI	CCNNNNNNNGG	2 cut(s)	313, 399
Bsp1286I	GDGCHC	3 cut(s)	186, 265, 909
Bsp1407I	TGTACA	1 cut(s)	195
Bsp143I	GATC	3 cut(s)	289, 434, 676
Bsp19I	CCATGG	1 cut(s)	147
BspCNI	CTCAG	2 cut(s)	299, 779
BspLI	GGNNCC	4 cut(s)	208, 264, 678, 875
BspPI	GGATC	3 cut(s)	442, 671, 684
BspT107I	GGYRCC	1 cut(s)	873
BsrDI	GCAATG	1 cut(s)	266
BsrFI	RCCGGY	1 cut(s)	306
BsrGI	TGTACA	1 cut(s)	195
BsrI	ACTGG	1 cut(s)	616
BssAI	RCCGGY	1 cut(s)	306
BssECI	CCNNGG	2 cut(s)	147, 880
BssMI	GATC	3 cut(s)	289, 434, 676
BssNAI	GTATAC	1 cut(s)	866
BssT1I	CCWWGG	1 cut(s)	147
Bst1107I	GTATAC	1 cut(s)	866
Bst2UI	CCWGG	1 cut(s)	882
BstAUI	TGTACA	1 cut(s)	195
BstC8I	GCNNGC	1 cut(s)	351
BstDEI	CTNAG	4 cut(s)	56, 89, 286, 766
BstDSI	CCRYGG	1 cut(s)	147
BstEII	GGTNACC	1 cut(s)	309
BstF5I	GGATG	4 cut(s)	480, 742, 787, 820
BstH2I	RGCGCY	1 cut(s)	591
BstHHI	GCGC	1 cut(s)	590
BstKTI	GATC	3 cut(s)	292, 437, 679
BstMBI	GATC	3 cut(s)	289, 434, 676
BstMWI	GCNNNNNNNGC	2 cut(s)	85, 621
BstNI	CCWGG	1 cut(s)	882
BstNSI	RCATGY	2 cut(s)	353, 571
BstPI	GGTNACC	1 cut(s)	309
BstSCI	CCNGG	1 cut(s)	880
BstX2I	RGATCY	2 cut(s)	434, 676
BstXI	CCANNNNNNTGG	1 cut(s)	897
BstYI	RGATCY	2 cut(s)	434, 676
BstZ17I	GTATAC	1 cut(s)	866
BtgI	CCRYGG	1 cut(s)	147
BtsCI	GGATG	4 cut(s)	480, 742, 787, 820
BtsI	GCAGTG	1 cut(s)	815
BtsIMutI	CAGTG	1 cut(s)	815
Cac8I	GCNNGC	1 cut(s)	351
CfoI	GCGC	1 cut(s)	590
Cfr10I	RCCGGY	1 cut(s)	306
Cfr13I	GGNCC	2 cut(s)	411, 526
Csp6I	GTAC	3 cut(s)	196, 707, 772
CspAI	ACCGGT	1 cut(s)	306
CviAII	CATG	6 cut(s)	148, 193, 350, 415, 530, 568
CviQI	GTAC	3 cut(s)	196, 707, 772
DdeI	CTNAG	4 cut(s)	56, 89, 286, 766
DpnI	GATC	3 cut(s)	291, 436, 678
DpnII	GATC	3 cut(s)	289, 434, 676
Ecl136II	GAGCTC	2 cut(s)	184, 907
Eco130I	CCWWGG	1 cut(s)	147
Eco24I	GRGCYC	3 cut(s)	186, 265, 909
Eco47I	GGWCC	2 cut(s)	411, 526
Eco47III	AGCGCT	1 cut(s)	589
Eco53kI	GAGCTC	2 cut(s)	184, 907
Eco57I	CTGAAG	1 cut(s)	612
Eco91I	GGTNACC	1 cut(s)	309
EcoICRI	GAGCTC	2 cut(s)	184, 907
EcoO65I	GGTNACC	1 cut(s)	309
EcoRII	CCWGG	1 cut(s)	880
EcoT14I	CCWWGG	1 cut(s)	147
EcoT22I	ATGCAT	1 cut(s)	673
EcoT38I	GRGCYC	3 cut(s)	186, 265, 909
ErhI	CCWWGG	1 cut(s)	147
FaeI	CATG	6 cut(s)	151, 196, 353, 418, 533, 571
FalI	AAGNNNNNCTT	2 cut(s)	542, 574
FatI	CATG	6 cut(s)	147, 192, 349, 414, 529, 567
FblI	GTMKAC	1 cut(s)	865
FokI	GGATG	4 cut(s)	487, 749, 774, 827
FriOI	GRGCYC	3 cut(s)	186, 265, 909
FspBI	CTAG	4 cut(s)	272, 354, 480, 846
GlaI	GCGC	1 cut(s)	589
GsuI	CTGGAG	2 cut(s)	162, 903
HaeII	RGCGCY	1 cut(s)	591
HapII	CCGG	2 cut(s)	307, 314
HhaI	GCGC	1 cut(s)	590
Hin1II	CATG	6 cut(s)	151, 196, 353, 418, 533, 571
Hin6I	GCGC	1 cut(s)	588
HinP1I	GCGC	1 cut(s)	588
HindIII	AAGCTT	1 cut(s)	53
HinfI	GANTC	5 cut(s)	119, 127, 164, 278, 301
HpaII	CCGG	2 cut(s)	307, 314
HphI	GGTGA	4 cut(s)	284, 296, 564, 572
Hpy166II	GTNNAC	2 cut(s)	198, 866
Hpy188I	TCNGA	5 cut(s)	289, 451, 514, 676, 769
Hpy188III	TCNNGA	1 cut(s)	179
Hpy8I	GTNNAC	2 cut(s)	198, 866
HpyAV	CCTTC	3 cut(s)	229, 402, 776
HpyCH4IV	ACGT	1 cut(s)	894
HpyCH4V	TGCA	4 cut(s)	371, 671, 742, 857
HpyF10VI	GCNNNNNNNGC	2 cut(s)	85, 621
HpyF3I	CTNAG	4 cut(s)	56, 89, 286, 766
HpySE526I	ACGT	1 cut(s)	894
Hsp92II	CATG	6 cut(s)	151, 196, 353, 418, 533, 571
HspAI	GCGC	1 cut(s)	588
Kzo9I	GATC	3 cut(s)	289, 434, 676
LmnI	GCTCC	4 cut(s)	212, 268, 715, 912
LpnPI	CCDG	9 cut(s)	170, 192, 320, 320, 327, 597, 867, 894, 903
LweI	GCATC	5 cut(s)	358, 465, 678, 680, 805
MaeI	CTAG	4 cut(s)	272, 354, 480, 846
MaeII	ACGT	1 cut(s)	894
MaeIII	GTNAC	3 cut(s)	309, 570, 604
MalI	GATC	3 cut(s)	291, 436, 678
MboI	GATC	3 cut(s)	289, 434, 676
MboII	GAAGA	1 cut(s)	605
MfeI	CAATTG	2 cut(s)	246, 339
MflI	RGATCY	2 cut(s)	434, 676
MhlI	GDGCHC	3 cut(s)	186, 265, 909
MluCI	AATT	7 cut(s)	246, 339, 388, 456, 619, 795, 833
MlyI	GAGTC	1 cut(s)	173
MmeI	TCCRAC	2 cut(s)	492, 501
Mph1103I	ATGCAT	1 cut(s)	673
MseI	TTAA	3 cut(s)	42, 534, 645
MspA1I	CMGCKG	1 cut(s)	170
MspI	CCGG	2 cut(s)	307, 314
MspR9I	CCNGG	1 cut(s)	882
MunI	CAATTG	2 cut(s)	246, 339
MvaI	CCWGG	1 cut(s)	882
MwoI	GCNNNNNNNGC	2 cut(s)	85, 621
NcoI	CCATGG	1 cut(s)	147
NdeII	GATC	3 cut(s)	289, 434, 676
NlaIII	CATG	6 cut(s)	151, 196, 353, 418, 533, 571
NlaIV	GGNNCC	4 cut(s)	208, 264, 678, 875
NmuCI	GTSAC	2 cut(s)	570, 604
NsiI	ATGCAT	1 cut(s)	673
NspI	RCATGY	2 cut(s)	353, 571
PaeI	GCATGC	1 cut(s)	353
PfeI	GAWTC	4 cut(s)	119, 127, 278, 301
PflFI	GACNNNGTC	1 cut(s)	508
PinAI	ACCGGT	1 cut(s)	306
PleI	GAGTC	1 cut(s)	172
PpsI	GAGTC	1 cut(s)	172
Psp124BI	GAGCTC	2 cut(s)	186, 909
Psp6I	CCWGG	1 cut(s)	880
PspEI	GGTNACC	1 cut(s)	309
PspGI	CCWGG	1 cut(s)	880
PspN4I	GGNNCC	4 cut(s)	208, 264, 678, 875
PspPI	GGNCC	2 cut(s)	411, 526
PsuI	RGATCY	2 cut(s)	434, 676
PsyI	GACNNNGTC	1 cut(s)	508
PvuII	CAGCTG	1 cut(s)	170
RsaI	GTAC	3 cut(s)	197, 708, 773
RsaNI	GTAC	3 cut(s)	196, 707, 772
SacI	GAGCTC	2 cut(s)	186, 909
SaqAI	TTAA	3 cut(s)	42, 534, 645
Sau3AI	GATC	3 cut(s)	289, 434, 676
Sau96I	GGNCC	2 cut(s)	411, 526
SchI	GAGTC	1 cut(s)	173
ScrFI	CCNGG	1 cut(s)	882
SduI	GDGCHC	3 cut(s)	186, 265, 909
SfaNI	GCATC	5 cut(s)	358, 465, 678, 680, 805
SinI	GGWCC	2 cut(s)	411, 526
SmlI	CTYRAG	2 cut(s)	80, 185
SmoI	CTYRAG	2 cut(s)	80, 185
SphI	GCATGC	1 cut(s)	353
Sse9I	AATT	7 cut(s)	246, 339, 388, 456, 619, 795, 833
SspMI	CTAG	4 cut(s)	272, 354, 480, 846
SstI	GAGCTC	2 cut(s)	186, 909
StyD4I	CCNGG	1 cut(s)	880
StyI	CCWWGG	1 cut(s)	147
TaiI	ACGT	1 cut(s)	897
TaqI	TCGA	2 cut(s)	130, 281
TasI	AATT	7 cut(s)	246, 339, 388, 456, 619, 795, 833
TatI	WGTACW	3 cut(s)	195, 706, 771
TfiI	GAWTC	4 cut(s)	119, 127, 278, 301
Tru1I	TTAA	3 cut(s)	42, 534, 645
Tru9I	TTAA	3 cut(s)	42, 534, 645
TscAI	CASTG	1 cut(s)	815
TseFI	GTSAC	2 cut(s)	570, 604
Tsp45I	GTSAC	2 cut(s)	570, 604
TspDTI	ATGAA	2 cut(s)	314, 504
TspGWI	ACGGA	2 cut(s)	334, 642
TspRI	CASTG	1 cut(s)	815
Tth111I	GACNNNGTC	1 cut(s)	508
VpaK11BI	GGWCC	2 cut(s)	411, 526
XapI	RAATTY	1 cut(s)	456
XceI	RCATGY	2 cut(s)	353, 571
XmiI	GTMKAC	1 cut(s)	865
XspI	CTAG	4 cut(s)	272, 354, 480, 846
Zsp2I	ATGCAT	1 cut(s)	673

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.