Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004326.1

Orthogroup ID

OG0006560

Physical Location & Seq

Genomic Coordinates Forward (+)

17948 .. 20590

Gene Structure 2643 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

atggcgaatcgacggtgcctccaactcctgacccgccgcgtctccgccctattctcagccaacccaccattccacaccctctcaaccccacctcctcccctctgtacccaacaacccctcatctccaactccccactcgttttcaccccccattggtccgcccacacccgccatttctcgtcggaccgaaacgatgacgtaaatgaggacagtgacgacgacgacgacgacgatgaaattgggtacagtagtgacgacgggagtttatcgaagaatgacgacgacgacgatgaaattgggtacagtagtgacgacgggagtttatcgaagaatggtgggtcgaaaagagagtacacggcggaggagatggaggcggaggcggcgggtattgggtacaaagtggttgggccgcttgagaagactgatgatggggttttcaagccctatgaacccgttttcgctgtcattcagattggttcgcatcagttcaaagttagtaatggggactccattttcactgaaagattgaaattttgcgaggtcaatgataagttgatattgaataaggttctcttggtgggcacaagtagtcagacaatgatcggcaggccaatagttcctgatgcagcagttcatgcagttgttgaagagcatgcattagatgcaaaggtacttatttttaagaaaaagaggaggaagaattaccgtcggaccaaaggtcatcgccaagaattaaccaagttgaggattattgatattcaagggattcagaaaccagaacctgtagtcaccgaaaaaccttcaaaggcacctggtaagaagccagaaaaggttgcagttgctgcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000741 GO:0003674 GO:0003676 GO:0003677 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0009553 GO:0009555 GO:0009559 GO:0009561 GO:0009566 GO:0009567 GO:0009987 GO:0010197 GO:0016043 GO:0019953 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0048229 GO:0048284 GO:0048856 GO:0048869 GO:0051704 GO:0071840 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L21p

Protein Analysis

282

Amino Acids

31.23

Weight (kDa)

5.67

Isoelectric Point (pI)

38.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L21p	PF00829	153 - 253	7.4e-32	Ribosomal prokaryotic L21 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006560)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30930
fragaria_vesca	FvH4_3g09190
malus_domestica	MD05G1312600.v1.1 MD10G1294400.v1.1
prunus_persica	Prupe.4G047500_v2.0.a1 Prupe.4G047500_v2.0.a1 Prupe.4G047500_v2.0.a1 Prupe.4G047500_v2.0.a1 Prupe.4G047500_v2.0.a1
pyrus_communis	pycom05g29050 pycom10g24610
rosa_chinensis	RchiOBHm_Chr5g0008411
rosa_laevigata	RLG00000031342 RLG00000031387 RLG00000031569 RLG00000035355
rosa_multiflora	Rmu_sc0004326.1_g000002
rosa_roxburghii	Rroxscaffold_1G00068080
rosa_rugosa	Rorug04G0435600
rosa_samantha	Rh5AG064300 Rh5BG061500 Rh5CG071400 Rh5CG071700 Rh5DG060400 Rh5DG064100
rosa_wichuraiana	Rw5G005650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	15, 808
AccII	CGCG	1 cut(s)	39
AcsI	RAATTY	1 cut(s)	530
AfaI	GTAC	6 cut(s)	106, 245, 302, 353, 395, 672
AfiI	CCNNNNNNNGG	2 cut(s)	153, 744
AgsI	TTSAA	7 cut(s)	439, 490, 529, 562, 647, 761, 804
AhdI	GACNNNNNGTC	1 cut(s)	717
AjnI	CCWGG	1 cut(s)	811
AjuI	GAANNNNNNNTTGG	2 cut(s)	53, 85
Alw26I	GTCTC	1 cut(s)	46
AlwNI	CAGNNNCTG	2 cut(s)	782, 842
AoxI	GGCC	2 cut(s)	407, 608
ApeKI	GCWGC	2 cut(s)	626, 842
ApoI	RAATTY	1 cut(s)	530
AspS9I	GGNCC	4 cut(s)	156, 184, 407, 711
AsuHPI	GGTGA	2 cut(s)	136, 781
AvaII	GGWCC	3 cut(s)	156, 184, 711
BaeGI	GKGCMC	1 cut(s)	584
BaeI	ACNNNNGTAYC	4 cut(s)	235, 268, 292, 325
BanI	GGYRCC	2 cut(s)	15, 808
BbsI	GAAGAC	1 cut(s)	425
BbvI	GCAGC	2 cut(s)	638, 829
BccI	CCATC	2 cut(s)	361, 422
BceAI	ACGGC	1 cut(s)	372
BciT130I	CCWGG	1 cut(s)	813
BcoDI	GTCTC	1 cut(s)	46
BfmI	CTRYAG	1 cut(s)	783
BisI	GCNGC	5 cut(s)	37, 381, 410, 627, 843
BlsI	GCNGC	5 cut(s)	38, 382, 411, 628, 844
Bme1390I	CCNGG	1 cut(s)	813
Bme18I	GGWCC	3 cut(s)	156, 184, 711
BmeRI	GACNNNNNGTC	1 cut(s)	717
BmgT120I	GGNCC	4 cut(s)	156, 184, 407, 711
BmiI	GGNNCC	2 cut(s)	17, 810
BmrFI	CCNGG	1 cut(s)	813
BmsI	GCATC	3 cut(s)	490, 613, 652
BpiI	GAAGAC	1 cut(s)	425
BpuEI	CTTGAG	1 cut(s)	434
BsaXI	ACNNNNNCTCC	3 cut(s)	33, 76, 106
Bsc4I	CCNNNNNNNGG	2 cut(s)	153, 744
BseBI	CCWGG	1 cut(s)	813
BseLI	CCNNNNNNNGG	2 cut(s)	153, 744
BseMII	CTCAG	1 cut(s)	69
BseRI	GAGGAG	3 cut(s)	84, 377, 706
BseSI	GKGCMC	1 cut(s)	584
BseXI	GCAGC	2 cut(s)	638, 829
Bsh1236I	CGCG	1 cut(s)	39
BshFI	GGCC	2 cut(s)	409, 610
BshNI	GGYRCC	2 cut(s)	15, 808
BslFI	GGGAC	1 cut(s)	518
BslI	CCNNNNNNNGG	2 cut(s)	153, 744
BsmAI	GTCTC	1 cut(s)	46
BsmBI	CGTCTC	1 cut(s)	46
BsmFI	GGGAC	1 cut(s)	518
BsnI	GGCC	2 cut(s)	409, 610
Bsp1286I	GDGCHC	1 cut(s)	584
Bsp143I	GATC	1 cut(s)	600
BspANI	GGCC	2 cut(s)	409, 610
BspCNI	CTCAG	1 cut(s)	68
BspFNI	CGCG	1 cut(s)	39
BspLI	GGNNCC	2 cut(s)	17, 810
BspQI	GCTCTTC	1 cut(s)	642
BspT107I	GGYRCC	2 cut(s)	15, 808
BssMI	GATC	1 cut(s)	600
Bst2UI	CCWGG	1 cut(s)	813
Bst4CI	ACNGT	5 cut(s)	15, 212, 248, 305, 707
Bst6I	CTCTTC	1 cut(s)	642
BstAPI	GCANNNNNTGC	3 cut(s)	635, 662, 842
BstC8I	GCNNGC	2 cut(s)	608, 654
BstDEI	CTNAG	1 cut(s)	55
BstFNI	CGCG	1 cut(s)	39
BstKTI	GATC	1 cut(s)	603
BstMAI	GTCTC	1 cut(s)	46
BstMBI	GATC	1 cut(s)	600
BstMWI	GCNNNNNNNGC	4 cut(s)	380, 635, 662, 842
BstNI	CCWGG	1 cut(s)	813
BstNSI	RCATGY	1 cut(s)	656
BstSCI	CCNGG	1 cut(s)	811
BstSFI	CTRYAG	1 cut(s)	783
BstSLI	GKGCMC	1 cut(s)	584
BstUI	CGCG	1 cut(s)	39
BstV1I	GCAGC	2 cut(s)	638, 829
BstV2I	GAAGAC	1 cut(s)	425
BsuRI	GGCC	2 cut(s)	409, 610
BtgZI	GCGATG	1 cut(s)	707
BtsIMutI	CAGTG	2 cut(s)	217, 516
Cac8I	GCNNGC	2 cut(s)	608, 654
CaiI	CAGNNNCTG	2 cut(s)	782, 842
Cfr13I	GGNCC	4 cut(s)	156, 184, 407, 711
CpoI	CGGWCCG	1 cut(s)	184
CseI	GACGC	1 cut(s)	28
CsiI	ACCWGGT	1 cut(s)	811
Csp6I	GTAC	6 cut(s)	105, 244, 301, 352, 394, 671
CspI	CGGWCCG	1 cut(s)	184
CviAII	CATG	2 cut(s)	635, 653
CviJI	RGCY	5 cut(s)	59, 409, 442, 610, 823
CviKI_1	RGCY	5 cut(s)	59, 409, 442, 610, 823
CviQI	GTAC	6 cut(s)	105, 244, 301, 352, 394, 671
DdeI	CTNAG	1 cut(s)	55
DpnI	GATC	1 cut(s)	602
DpnII	GATC	1 cut(s)	600
DriI	GACNNNNNGTC	1 cut(s)	717
Eam1104I	CTCTTC	1 cut(s)	642
Eam1105I	GACNNNNNGTC	1 cut(s)	717
EarI	CTCTTC	1 cut(s)	642
EciI	GGCGGA	4 cut(s)	34, 148, 374, 389
Eco47I	GGWCC	3 cut(s)	156, 184, 711
EcoRII	CCWGG	1 cut(s)	811
EcoT22I	ATGCAT	1 cut(s)	658
Esp3I	CGTCTC	1 cut(s)	46
FaeI	CATG	2 cut(s)	638, 656
FaiI	YATR	4 cut(s)	447, 636, 654, 847
FalI	AAGNNNNNCTT	2 cut(s)	557, 589
FaqI	GGGAC	1 cut(s)	518
FatI	CATG	2 cut(s)	634, 652
FauI	CCCGC	3 cut(s)	41, 176, 376
Fnu4HI	GCNGC	5 cut(s)	37, 381, 410, 627, 843
Fsp4HI	GCNGC	5 cut(s)	37, 381, 410, 627, 843
GluI	GCNGC	5 cut(s)	37, 381, 410, 627, 843
HaeIII	GGCC	2 cut(s)	409, 610
HgaI	GACGC	1 cut(s)	28
Hin1II	CATG	2 cut(s)	638, 656
HinfI	GANTC	3 cut(s)	7, 506, 766
HphI	GGTGA	2 cut(s)	136, 781
Hpy166II	GTNNAC	1 cut(s)	354
Hpy188I	TCNGA	5 cut(s)	184, 471, 594, 711, 771
Hpy188III	TCNNGA	2 cut(s)	28, 620
Hpy8I	GTNNAC	1 cut(s)	354
HpyAV	CCTTC	1 cut(s)	810
HpyCH4III	ACNGT	5 cut(s)	15, 212, 248, 305, 707
HpyCH4IV	ACGT	1 cut(s)	198
HpyCH4V	TGCA	6 cut(s)	626, 638, 656, 665, 836, 845
HpyF10VI	GCNNNNNNNGC	4 cut(s)	380, 635, 662, 842
HpyF3I	CTNAG	1 cut(s)	55
HpySE526I	ACGT	1 cut(s)	198
Hsp92II	CATG	2 cut(s)	638, 656
Kzo9I	GATC	1 cut(s)	600
LguI	GCTCTTC	1 cut(s)	642
LpnPI	CCDG	8 cut(s)	41, 592, 633, 789, 795, 798, 825, 837
Lsp1109I	GCAGC	2 cut(s)	638, 829
LweI	GCATC	3 cut(s)	490, 613, 652
MabI	ACCWGGT	1 cut(s)	811
MaeII	ACGT	1 cut(s)	198
MaeIII	GTNAC	4 cut(s)	212, 251, 308, 787
MalI	GATC	1 cut(s)	602
MboI	GATC	1 cut(s)	600
MboII	GAAGA	5 cut(s)	283, 340, 430, 659, 709
MhlI	GDGCHC	1 cut(s)	584
MluCI	AATT	5 cut(s)	237, 294, 530, 700, 731
MlyI	GAGTC	1 cut(s)	500
MmeI	TCCRAC	4 cut(s)	46, 150, 162, 689
Mph1103I	ATGCAT	1 cut(s)	658
MseI	TTAA	2 cut(s)	681, 734
MspR9I	CCNGG	1 cut(s)	813
MvaI	CCWGG	1 cut(s)	813
MvnI	CGCG	1 cut(s)	39
MwoI	GCNNNNNNNGC	4 cut(s)	380, 635, 662, 842
NdeII	GATC	1 cut(s)	600
NlaIII	CATG	2 cut(s)	638, 656
NlaIV	GGNNCC	2 cut(s)	17, 810
NmuCI	GTSAC	4 cut(s)	212, 251, 308, 787
NsiI	ATGCAT	1 cut(s)	658
NspI	RCATGY	1 cut(s)	656
PaeI	GCATGC	1 cut(s)	656
PciSI	GCTCTTC	1 cut(s)	642
PcsI	WCGNNNNNNNCGW	4 cut(s)	222, 225, 228, 285
PfeI	GAWTC	2 cut(s)	7, 766
PkrI	GCNGC	5 cut(s)	38, 382, 411, 628, 844
PleI	GAGTC	1 cut(s)	500
PpsI	GAGTC	1 cut(s)	500
Psp6I	CCWGG	1 cut(s)	811
PspGI	CCWGG	1 cut(s)	811
PspN4I	GGNNCC	2 cut(s)	17, 810
PspPI	GGNCC	4 cut(s)	156, 184, 407, 711
PstNI	CAGNNNCTG	2 cut(s)	782, 842
RsaI	GTAC	6 cut(s)	106, 245, 302, 353, 395, 672
RsaNI	GTAC	6 cut(s)	105, 244, 301, 352, 394, 671
Rsr2I	CGGWCCG	1 cut(s)	184
RsrII	CGGWCCG	1 cut(s)	184
SapI	GCTCTTC	1 cut(s)	642
SaqAI	TTAA	2 cut(s)	681, 734
SatI	GCNGC	5 cut(s)	37, 381, 410, 627, 843
Sau3AI	GATC	1 cut(s)	600
Sau96I	GGNCC	4 cut(s)	156, 184, 407, 711
SchI	GAGTC	1 cut(s)	500
ScrFI	CCNGG	1 cut(s)	813
SduI	GDGCHC	1 cut(s)	584
SexAI	ACCWGGT	1 cut(s)	811
SfaNI	GCATC	3 cut(s)	490, 613, 652
SfcI	CTRYAG	1 cut(s)	783
SinI	GGWCC	3 cut(s)	156, 184, 711
SmlI	CTYRAG	1 cut(s)	413
SmoI	CTYRAG	1 cut(s)	413
SphI	GCATGC	1 cut(s)	656
Sse9I	AATT	5 cut(s)	237, 294, 530, 700, 731
StyD4I	CCNGG	1 cut(s)	811
TaaI	ACNGT	5 cut(s)	15, 212, 248, 305, 707
TaiI	ACGT	1 cut(s)	201
TaqI	TCGA	4 cut(s)	10, 269, 326, 341
TaqII	GACCGA	1 cut(s)	201
TasI	AATT	5 cut(s)	237, 294, 530, 700, 731
TatI	WGTACW	1 cut(s)	351
TauI	GCSGC	3 cut(s)	39, 383, 412
TfiI	GAWTC	2 cut(s)	7, 766
Tru1I	TTAA	2 cut(s)	681, 734
Tru9I	TTAA	2 cut(s)	681, 734
TscAI	CASTG	2 cut(s)	217, 523
TseFI	GTSAC	4 cut(s)	212, 251, 308, 787
TseI	GCWGC	2 cut(s)	626, 842
Tsp45I	GTSAC	4 cut(s)	212, 251, 308, 787
TspDTI	ATGAA	4 cut(s)	249, 306, 462, 623
TspRI	CASTG	2 cut(s)	217, 523
VpaK11BI	GGWCC	3 cut(s)	156, 184, 711
XapI	RAATTY	1 cut(s)	530
XceI	RCATGY	1 cut(s)	656
Zsp2I	ATGCAT	1 cut(s)	658

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.