Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004353.1

Orthogroup ID

OG0005275

Physical Location & Seq

Genomic Coordinates Forward (+)

38560 .. 39028

Gene Structure 469 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 469 bp

atggcttccaatacgccgaatttggagtgccgcatgtacgaagcaaaatacccggaggtagacgcggcggtgatgatccaggtcaatagcattgacgacgtgggtgccaaggtctccctcctcgagtacaacaacatggagggcatgattcccttgacggagctaagcaatcgtcgcctccggagcatcaacaaacacgtcaaggtgggccgcatcgagcccgtcctggtttacaaggtcgacgaacacaagggctacatagacttgagcaagcggaggctttcccacgaagacatccaggcctgcgacgaaaagtacaacaagagcaagctcgtccactccatcatgcgccacgtggccgagactttgaacattgatttggaggagttgtacgtcaacattgcatggccgctgtaccggaagtacggccatgcagctgaagctttcaaaataatcgccacggattccg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000077 GO:0000278 GO:0002181 GO:0002183 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003743 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005840 GO:0005850 GO:0005851 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0006950 GO:0006974 GO:0007049 GO:0007093 GO:0007346 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0010564 GO:0010948 GO:0019538 GO:0022402 GO:0031570 GO:0031571 GO:0032991 GO:0033290 GO:0033554 GO:0034641 GO:0034645 GO:0043021 GO:0043022 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0043614 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0044773 GO:0044774 GO:0044783 GO:0044819 GO:0044877 GO:0045786 GO:0045930 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0051726 GO:0065007 GO:0070993 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902806 GO:1902807 GO:1903047 GO:1990904 GO:2000045 GO:2000134

KEGG Pathways

Metabolic & Signaling

ko03013 ko04138 ko04140 ko04141 ko04210 ko04932 ko05160 ko05162 ko05164 ko05168 map03013 map04138 map04140 map04141 map04210 map04932 map05160 map05162 map05164 map05168

Pfam Domains

Protein Families

EIF_2_alpha S1

Protein Analysis

156

Amino Acids

17.95

Weight (kDa)

6.3

Isoelectric Point (pI)

43.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
S1	PF00575	18 - 92	1.7e-12	S1 RNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005275)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05470
fragaria_vesca	FvH4_6g15100 FvH4_7g25050
malus_domestica	MD01G1157300.v1.1 MD07G1226100.v1.1
prunus_persica	Prupe.2G255200_v2.0.a1
pyrus_communis	pycom01g17410 pycom07g20450
rosa_chinensis	RchiOBHm_Chr1g0370911 RchiOBHm_Chr3g0468371
rosa_laevigata	RLG00000024436 RLG00000026999
rosa_multiflora	Rmu_co7996168.1_g000001 Rmu_sc0001018.1_g000002 Rmu_sc0004353.1_g000010 Rmu_sc0014003.1_g000002
rosa_roxburghii	Rroxscaffold_4G00286130 Rroxscaffold_6G00412840
rosa_rugosa	Rorug01G0360200 Rorug03G0095000
rosa_samantha	Rh1AG370200 Rh1BG333800 Rh1CG347100 Rh1DG365000 Rh3AG142800 Rh3BG165200 Rh3DG164800
rosa_wichuraiana	Rw1G032580 Rw3G013490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	104
AccI	GTMKAC	2 cut(s)	60, 240
AccII	CGCG	1 cut(s)	65
AccIII	TCCGGA	1 cut(s)	180
AciI	CCGC	6 cut(s)	31, 65, 68, 211, 274, 410
AclWI	GGATC	1 cut(s)	70
AcoI	YGGCCR	3 cut(s)	357, 407, 427
AcsI	RAATTY	1 cut(s)	19
AcuI	CTGAAG	1 cut(s)	459
AcvI	CACGTG	1 cut(s)	355
AfaI	GTAC	6 cut(s)	38, 128, 317, 392, 416, 425
AflIII	ACRYGT	1 cut(s)	196
AgsI	TTSAA	2 cut(s)	370, 448
AjiI	CACGTC	2 cut(s)	100, 199
AjnI	CCWGG	3 cut(s)	78, 225, 297
AjuI	GAANNNNNNNTTGG	2 cut(s)	362, 394
AluBI	AGCT	4 cut(s)	163, 331, 437, 443
AluI	AGCT	4 cut(s)	163, 331, 437, 443
Alw26I	GTCTC	2 cut(s)	118, 356
AlwI	GGATC	1 cut(s)	70
Ama87I	CYCGRG	1 cut(s)	122
Aor13HI	TCCGGA	1 cut(s)	180
AoxI	GGCC	5 cut(s)	208, 300, 357, 407, 427
ApeKI	GCWGC	1 cut(s)	434
ApoI	RAATTY	1 cut(s)	19
AspLEI	GCGC	1 cut(s)	351
AspS9I	GGNCC	1 cut(s)	208
AsuC2I	CCSGG	1 cut(s)	53
AsuHPI	GGTGA	1 cut(s)	82
AvaI	CYCGRG	1 cut(s)	122
BanI	GGYRCC	1 cut(s)	104
BanII	GRGCYC	1 cut(s)	222
BbrPI	CACGTG	1 cut(s)	355
BbsI	GAAGAC	1 cut(s)	297
BbvI	GCAGC	1 cut(s)	446
BccI	CCATC	1 cut(s)	350
BceAI	ACGGC	1 cut(s)	442
BcgI	CGANNNNNNTGC	2 cut(s)	86, 120
BciT130I	CCWGG	3 cut(s)	80, 227, 299
BcnI	CCSGG	1 cut(s)	53
BcoDI	GTCTC	2 cut(s)	118, 356
BisI	GCNGC	5 cut(s)	31, 66, 211, 410, 435
BlpI	GCTNAGC	1 cut(s)	164
BlsI	GCNGC	5 cut(s)	32, 67, 212, 411, 436
Bme1390I	CCNGG	4 cut(s)	53, 80, 227, 299
BmeT110I	CYCGRG	1 cut(s)	122
BmgBI	CACGTC	2 cut(s)	100, 199
BmgT120I	GGNCC	1 cut(s)	208
BmiI	GGNNCC	1 cut(s)	106
BmrFI	CCNGG	4 cut(s)	53, 80, 227, 299
BmsI	GCATC	2 cut(s)	195, 222
BpiI	GAAGAC	1 cut(s)	297
Bpu1102I	GCTNAGC	1 cut(s)	164
BpuEI	CTTGAG	1 cut(s)	286
BpuMI	CCSGG	1 cut(s)	53
BsaAI	YACGTR	1 cut(s)	355
BsaI	GGTCTC	1 cut(s)	118
BsaJI	CCNNGG	2 cut(s)	108, 459
BsaWI	WCCGGW	2 cut(s)	180, 417
BsaXI	ACNNNNNCTCC	2 cut(s)	374, 404
Bse3DI	GCAATG	1 cut(s)	399
BseAI	TCCGGA	1 cut(s)	180
BseBI	CCWGG	3 cut(s)	80, 227, 299
BseDI	CCNNGG	2 cut(s)	108, 459
BseGI	GGATG	1 cut(s)	294
BseMI	GCAATG	1 cut(s)	399
BseRI	GAGGAG	2 cut(s)	110, 398
BseXI	GCAGC	1 cut(s)	446
Bsh1236I	CGCG	1 cut(s)	65
BshFI	GGCC	5 cut(s)	210, 302, 359, 409, 429
BshNI	GGYRCC	1 cut(s)	104
BsiHKCI	CYCGRG	1 cut(s)	122
BsiSI	CCGG	3 cut(s)	53, 181, 418
BsmAI	GTCTC	2 cut(s)	118, 356
BsnI	GGCC	5 cut(s)	210, 302, 359, 409, 429
Bso31I	GGTCTC	1 cut(s)	118
BsoBI	CYCGRG	1 cut(s)	122
Bsp1286I	GDGCHC	1 cut(s)	222
Bsp13I	TCCGGA	1 cut(s)	180
Bsp143I	GATC	1 cut(s)	75
Bsp1720I	GCTNAGC	1 cut(s)	164
BspACI	CCGC	6 cut(s)	31, 65, 68, 211, 274, 410
BspANI	GGCC	5 cut(s)	210, 302, 359, 409, 429
BspEI	TCCGGA	1 cut(s)	180
BspFNI	CGCG	1 cut(s)	65
BspLI	GGNNCC	1 cut(s)	106
BspPI	GGATC	1 cut(s)	70
BspT107I	GGYRCC	1 cut(s)	104
BspTNI	GGTCTC	1 cut(s)	118
BsrDI	GCAATG	1 cut(s)	399
BssECI	CCNNGG	2 cut(s)	108, 459
BssMI	GATC	1 cut(s)	75
BssT1I	CCWWGG	1 cut(s)	108
Bst2UI	CCWGG	3 cut(s)	80, 227, 299
BstBAI	YACGTR	1 cut(s)	355
BstC8I	GCNNGC	3 cut(s)	272, 304, 329
BstDEI	CTNAG	1 cut(s)	164
BstDSI	CCRYGG	1 cut(s)	459
BstF5I	GGATG	1 cut(s)	294
BstFNI	CGCG	1 cut(s)	65
BstHHI	GCGC	1 cut(s)	351
BstKTI	GATC	1 cut(s)	78
BstMAI	GTCTC	2 cut(s)	118, 356
BstMBI	GATC	1 cut(s)	75
BstMWI	GCNNNNNNNGC	3 cut(s)	174, 183, 440
BstNI	CCWGG	3 cut(s)	80, 227, 299
BstNSI	RCATGY	1 cut(s)	37
BstSCI	CCNGG	4 cut(s)	51, 78, 225, 297
BstUI	CGCG	1 cut(s)	65
BstV1I	GCAGC	1 cut(s)	446
BstV2I	GAAGAC	1 cut(s)	297
BsuRI	GGCC	5 cut(s)	210, 302, 359, 409, 429
BtgI	CCRYGG	1 cut(s)	459
BtrI	CACGTC	2 cut(s)	100, 199
BtsCI	GGATG	1 cut(s)	294
Cac8I	GCNNGC	3 cut(s)	272, 304, 329
CfoI	GCGC	1 cut(s)	351
Cfr13I	GGNCC	1 cut(s)	208
CseI	GACGC	1 cut(s)	71
Csp6I	GTAC	6 cut(s)	37, 127, 316, 391, 415, 424
CviAII	CATG	6 cut(s)	34, 136, 145, 346, 405, 431
CviQI	GTAC	6 cut(s)	37, 127, 316, 391, 415, 424
DdeI	CTNAG	1 cut(s)	164
DpnI	GATC	1 cut(s)	77
DpnII	GATC	1 cut(s)	75
EaeI	YGGCCR	3 cut(s)	357, 407, 427
Eco130I	CCWWGG	1 cut(s)	108
Eco147I	AGGCCT	1 cut(s)	302
Eco24I	GRGCYC	1 cut(s)	222
Eco31I	GGTCTC	1 cut(s)	118
Eco57I	CTGAAG	1 cut(s)	459
Eco72I	CACGTG	1 cut(s)	355
Eco88I	CYCGRG	1 cut(s)	122
EcoRII	CCWGG	3 cut(s)	78, 225, 297
EcoT14I	CCWWGG	1 cut(s)	108
EcoT38I	GRGCYC	1 cut(s)	222
ErhI	CCWWGG	1 cut(s)	108
FaeI	CATG	6 cut(s)	37, 139, 148, 349, 408, 434
FaiI	YATR	7 cut(s)	35, 137, 146, 260, 347, 406, 432
FatI	CATG	6 cut(s)	33, 135, 144, 345, 404, 430
FblI	GTMKAC	2 cut(s)	60, 240
Fnu4HI	GCNGC	5 cut(s)	31, 66, 211, 410, 435
FokI	GGATG	1 cut(s)	281
FriOI	GRGCYC	1 cut(s)	222
Fsp4HI	GCNGC	5 cut(s)	31, 66, 211, 410, 435
GlaI	GCGC	1 cut(s)	350
GluI	GCNGC	5 cut(s)	31, 66, 211, 410, 435
HaeIII	GGCC	5 cut(s)	210, 302, 359, 409, 429
HapII	CCGG	3 cut(s)	53, 181, 418
HgaI	GACGC	1 cut(s)	71
HhaI	GCGC	1 cut(s)	351
Hin1II	CATG	6 cut(s)	37, 139, 148, 349, 408, 434
Hin6I	GCGC	1 cut(s)	349
HinP1I	GCGC	1 cut(s)	349
HincII	GTYRAC	2 cut(s)	241, 397
HindII	GTYRAC	2 cut(s)	241, 397
HindIII	AAGCTT	1 cut(s)	441
HinfI	GANTC	2 cut(s)	148, 464
HpaII	CCGG	3 cut(s)	53, 181, 418
HphI	GGTGA	1 cut(s)	82
Hpy166II	GTNNAC	5 cut(s)	61, 232, 241, 337, 397
Hpy188III	TCNNGA	1 cut(s)	181
Hpy8I	GTNNAC	5 cut(s)	61, 232, 241, 337, 397
Hpy99I	CGWCG	4 cut(s)	101, 177, 245, 311
HpyCH4IV	ACGT	4 cut(s)	99, 198, 354, 393
HpyCH4V	TGCA	2 cut(s)	404, 434
HpyF10VI	GCNNNNNNNGC	3 cut(s)	174, 183, 440
HpyF3I	CTNAG	1 cut(s)	164
HpySE526I	ACGT	4 cut(s)	99, 198, 354, 393
Hsp92II	CATG	6 cut(s)	37, 139, 148, 349, 408, 434
HspAI	GCGC	1 cut(s)	349
Kpn2I	TCCGGA	1 cut(s)	180
Kzo9I	GATC	1 cut(s)	75
LmnI	GCTCC	2 cut(s)	160, 183
Lsp1109I	GCAGC	1 cut(s)	446
LweI	GCATC	2 cut(s)	195, 222
MaeII	ACGT	4 cut(s)	99, 198, 354, 393
MalI	GATC	1 cut(s)	77
MboI	GATC	1 cut(s)	75
MboII	GAAGA	1 cut(s)	302
MhlI	GDGCHC	1 cut(s)	222
MluCI	AATT	1 cut(s)	19
MnlI	CCTC	7 cut(s)	49, 128, 131, 133, 188, 270, 376
MroI	TCCGGA	1 cut(s)	180
MspA1I	CMGCKG	2 cut(s)	412, 437
MspI	CCGG	3 cut(s)	53, 181, 418
MspR9I	CCNGG	4 cut(s)	53, 80, 227, 299
MvaI	CCWGG	3 cut(s)	80, 227, 299
MvnI	CGCG	1 cut(s)	65
MwoI	GCNNNNNNNGC	3 cut(s)	174, 183, 440
NciI	CCSGG	1 cut(s)	53
NdeII	GATC	1 cut(s)	75
NlaIII	CATG	6 cut(s)	37, 139, 148, 349, 408, 434
NlaIV	GGNNCC	1 cut(s)	106
NmeAIII	GCCGAG	1 cut(s)	385
NspI	RCATGY	1 cut(s)	37
PaeR7I	CTCGAG	1 cut(s)	122
PceI	AGGCCT	1 cut(s)	302
PfeI	GAWTC	2 cut(s)	148, 464
PkrI	GCNGC	5 cut(s)	32, 67, 212, 411, 436
PmaCI	CACGTG	1 cut(s)	355
PmlI	CACGTG	1 cut(s)	355
Ppu21I	YACGTR	1 cut(s)	355
Psp6I	CCWGG	3 cut(s)	78, 225, 297
PspCI	CACGTG	1 cut(s)	355
PspGI	CCWGG	3 cut(s)	78, 225, 297
PspN4I	GGNNCC	1 cut(s)	106
PspPI	GGNCC	1 cut(s)	208
PspXI	VCTCGAGB	1 cut(s)	122
PvuII	CAGCTG	1 cut(s)	437
RsaI	GTAC	6 cut(s)	38, 128, 317, 392, 416, 425
RsaNI	GTAC	6 cut(s)	37, 127, 316, 391, 415, 424
SalI	GTCGAC	1 cut(s)	239
SatI	GCNGC	5 cut(s)	31, 66, 211, 410, 435
Sau3AI	GATC	1 cut(s)	75
Sau96I	GGNCC	1 cut(s)	208
ScrFI	CCNGG	4 cut(s)	53, 80, 227, 299
SduI	GDGCHC	1 cut(s)	222
SfaNI	GCATC	2 cut(s)	195, 222
Sfr274I	CTCGAG	1 cut(s)	122
SlaI	CTCGAG	1 cut(s)	122
SmlI	CTYRAG	2 cut(s)	122, 265
SmoI	CTYRAG	2 cut(s)	122, 265
Sse9I	AATT	1 cut(s)	19
SseBI	AGGCCT	1 cut(s)	302
SsiI	CCGC	6 cut(s)	31, 65, 68, 211, 274, 410
StuI	AGGCCT	1 cut(s)	302
StyD4I	CCNGG	4 cut(s)	51, 78, 225, 297
StyI	CCWWGG	1 cut(s)	108
TaiI	ACGT	4 cut(s)	102, 201, 357, 396
TaqI	TCGA	3 cut(s)	123, 216, 240
TasI	AATT	1 cut(s)	19
TatI	WGTACW	2 cut(s)	126, 315
TauI	GCSGC	4 cut(s)	33, 68, 213, 412
TfiI	GAWTC	2 cut(s)	148, 464
TseI	GCWGC	1 cut(s)	434
TspGWI	ACGGA	1 cut(s)	173
XapI	RAATTY	1 cut(s)	19
XceI	RCATGY	1 cut(s)	37
XhoI	CTCGAG	1 cut(s)	122
XmiI	GTMKAC	2 cut(s)	60, 240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.