Rmu_sc0004550.1_g000009
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004550.1
OG0008985
Physical Location & Seq
Forward (+)
19438 .. 20576
1139 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 972 bp
atgaaacaaccatcgacacaaggtaggacatgtgtattggaagccaagcagttccacatggttaaactagaacagttagtagtctgtccaaacccgaataggaaacctgacgtcaccgccggtcgaatccacggccagatttccattccctctccgagcccgatccttttccccatctctcacccactcccctacaacacctctcgcttccactccaacagtccaactctctctctctctctctctctctcaacccgaacccgacccatggagcgcccgacccggccctacgccccgggcggccgcgaggactgctggagcgacgacgccacgtcagtgctgataacggcgtggggcgaccgttacctccgcctcaaccgcggcaacctccgccagaaggactggaaggaggtggcggactccgtcaactcccgccgcgacggcgccgttttcaagaccgacgggcagtgcaagaaccgaatcgacacgctgaagaagaagtacaagctcgaaaagtccaagcccttcccctccacgtggatcttctacgacagcctcgactcgctcatcggagtcccctcctcaaacgccgccgctttgaccagacccccgaagccactcacactcgccctgaccctcaagtccgccgccgaccccagtcccctgggtttccgtcgctgcggctccacggagagcgacggcgaggatgacgtggaggggggaggagtagggttggcgggtggggcggcgtgtaggcaactggcgagggcgatcttgaagttcggggagatttatgagaggatggagagttccaagcaggagcagatggttgaactggagaagcagaggatggctttcactaaggaacttgaggtgcagaggttgaatatgtttatggatgctcaattggagctggagaagatgaagaagcgccccaaatactcaaagcattcttccggaaagaagttgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

323

Amino Acids

36.17

Weight (kDa)

9.62

Isoelectric Point (pI)

46.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 104 - 189 8.9e-19 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 640
AatII GACGTC 1 cut(s) 114
AccB1I GGYRCC 1 cut(s) 443
AccII CGCG 3 cut(s) 306, 381, 438
AccIII TCCGGA 1 cut(s) 956
AclWI GGATC 2 cut(s) 157, 548
AcoI YGGCCR 2 cut(s) 133, 301
AcuI CTGAAG 1 cut(s) 512
AcvI CACGTG 1 cut(s) 537
AcyI GRCGYC 3 cut(s) 111, 327, 444
AfaI GTAC 1 cut(s) 503
AfiI CCNNNNNNNGG 3 cut(s) 268, 397, 537
AflIII ACRYGT 1 cut(s) 29
AgsI TTSAA 4 cut(s) 454, 778, 833, 886
AhdI GACNNNNNGTC 1 cut(s) 331
AjiI CACGTC 2 cut(s) 333, 712
AjnI CCWGG 1 cut(s) 663
AleI CACNNNNGTG 1 cut(s) 335
AloI GAACNNNNNNTCC 2 cut(s) 793, 825
AluBI AGCT 2 cut(s) 508, 913
AluI AGCT 2 cut(s) 508, 913
AlwI GGATC 2 cut(s) 157, 548
Ama87I CYCGRG 1 cut(s) 295
Aor13HI TCCGGA 1 cut(s) 956
AoxI GGCC 3 cut(s) 133, 284, 301
ApeKI GCWGC 1 cut(s) 678
AspLEI GCGC 3 cut(s) 276, 446, 933
AspS9I GGNCC 1 cut(s) 285
AsuC2I CCSGG 3 cut(s) 283, 296, 297
AsuHPI GGTGA 2 cut(s) 106, 173
AvaI CYCGRG 1 cut(s) 295
BanI GGYRCC 1 cut(s) 443
BanII GRGCYC 1 cut(s) 161
BarI GAAGNNNNNNTAC 2 cut(s) 485, 517
BbrPI CACGTG 1 cut(s) 537
BbvI GCAGC 1 cut(s) 665
BccI CCATC 5 cut(s) 19, 182, 796, 820, 844
BceAI ACGGC 5 cut(s) 148, 363, 431, 457, 715
BciT130I CCWGG 1 cut(s) 665
BcnI CCSGG 3 cut(s) 283, 296, 297
BfaI CTAG 1 cut(s) 68
BfoI RGCGCY 3 cut(s) 277, 447, 934
BglI GCCNNNNNGGC 1 cut(s) 441
Bme1390I CCNGG 4 cut(s) 283, 296, 297, 665
BmeRI GACNNNNNGTC 1 cut(s) 331
BmeT110I CYCGRG 1 cut(s) 295
BmgBI CACGTC 2 cut(s) 333, 712
BmgT120I GGNCC 1 cut(s) 285
BmiI GGNNCC 2 cut(s) 445, 685
BmrFI CCNGG 4 cut(s) 283, 296, 297, 665
BmrI ACTGGG 1 cut(s) 651
BmsI GCATC 1 cut(s) 889
BmuI ACTGGG 1 cut(s) 651
BoxI GACNNNNGTC 1 cut(s) 657
BpmI CTGGAG 3 cut(s) 337, 857, 935
BpuEI CTTGAG 2 cut(s) 623, 890
BpuMI CCSGG 3 cut(s) 283, 296, 297
BsaAI YACGTR 1 cut(s) 537
BsaHI GRCGYC 3 cut(s) 111, 327, 444
BsaJI CCNNGG 8 cut(s) 130, 267, 294, 295, 379, 663, 664, 687
BsaWI WCCGGW 1 cut(s) 956
Bsc4I CCNNNNNNNGG 3 cut(s) 268, 397, 537
Bse118I RCCGGY 1 cut(s) 119
Bse1I ACTGG 4 cut(s) 407, 657, 765, 840
BseAI TCCGGA 1 cut(s) 956
BseBI CCWGG 1 cut(s) 665
BseDI CCNNGG 8 cut(s) 130, 267, 294, 295, 379, 663, 664, 687
BseGI GGATG 4 cut(s) 712, 807, 855, 904
BseLI CCNNNNNNNGG 3 cut(s) 268, 397, 537
BseNI ACTGG 4 cut(s) 407, 657, 765, 840
BseRI GAGGAG 2 cut(s) 571, 738
BseX3I CGGCCG 1 cut(s) 301
BseXI GCAGC 1 cut(s) 665
BsgI GTGCAG 1 cut(s) 896
Bsh1236I CGCG 3 cut(s) 306, 381, 438
Bsh1285I CGRYCG 3 cut(s) 124, 304, 361
BshFI GGCC 3 cut(s) 135, 286, 303
BshNI GGYRCC 1 cut(s) 443
BsiEI CGRYCG 3 cut(s) 124, 304, 361
BsiHKCI CYCGRG 1 cut(s) 295
BsiSI CCGG 4 cut(s) 120, 283, 296, 957
BslFI GGGAC 2 cut(s) 560, 645
BslI CCNNNNNNNGG 3 cut(s) 268, 397, 537
BsmFI GGGAC 2 cut(s) 560, 645
BsmI GAATGC 1 cut(s) 949
BsnI GGCC 3 cut(s) 135, 286, 303
BsoBI CYCGRG 1 cut(s) 295
Bsp1286I GDGCHC 1 cut(s) 161
Bsp13I TCCGGA 1 cut(s) 956
Bsp143I GATC 3 cut(s) 162, 540, 771
Bsp19I CCATGG 1 cut(s) 267
BspANI GGCC 3 cut(s) 135, 286, 303
BspEI TCCGGA 1 cut(s) 956
BspFNI CGCG 3 cut(s) 306, 381, 438
BspLI GGNNCC 2 cut(s) 445, 685
BspPI GGATC 2 cut(s) 157, 548
BspT107I GGYRCC 1 cut(s) 443
BsrFI RCCGGY 1 cut(s) 119
BsrI ACTGG 4 cut(s) 407, 657, 765, 840
BssAI RCCGGY 1 cut(s) 119
BssECI CCNNGG 8 cut(s) 130, 267, 294, 295, 379, 663, 664, 687
BssMI GATC 3 cut(s) 162, 540, 771
BssNI GRCGYC 3 cut(s) 111, 327, 444
BssT1I CCWWGG 1 cut(s) 267
Bst2UI CCWGG 1 cut(s) 665
Bst4CI ACNGT 3 cut(s) 75, 221, 362
BstACI GRCGYC 3 cut(s) 111, 327, 444
BstBAI YACGTR 1 cut(s) 537
BstDEI CTNAG 1 cut(s) 861
BstDSI CCRYGG 4 cut(s) 130, 267, 379, 687
BstF5I GGATG 4 cut(s) 712, 807, 855, 904
BstFNI CGCG 3 cut(s) 306, 381, 438
BstH2I RGCGCY 3 cut(s) 277, 447, 934
BstHHI GCGC 3 cut(s) 276, 446, 933
BstKTI GATC 3 cut(s) 165, 543, 774
BstMBI GATC 3 cut(s) 162, 540, 771
BstMCI CGRYCG 3 cut(s) 124, 304, 361
BstMWI GCNNNNNNNGC 5 cut(s) 312, 378, 390, 441, 743
BstNI CCWGG 1 cut(s) 665
BstNSI RCATGY 1 cut(s) 33
BstPAI GACNNNNGTC 1 cut(s) 657
BstSCI CCNGG 4 cut(s) 281, 294, 295, 663
BstUI CGCG 3 cut(s) 306, 381, 438
BstV1I GCAGC 1 cut(s) 665
BstX2I RGATCY 1 cut(s) 540
BstXI CCANNNNNNTGG 1 cut(s) 664
BstYI RGATCY 1 cut(s) 540
BstZI CGGCCG 1 cut(s) 301
BsuRI GGCC 3 cut(s) 135, 286, 303
BtgI CCRYGG 4 cut(s) 130, 267, 379, 687
BtrI CACGTC 2 cut(s) 333, 712
BtsCI GGATG 4 cut(s) 712, 807, 855, 904
BtsI GCAGTG 1 cut(s) 473
BtsIMutI CAGTG 2 cut(s) 342, 473
CciNI GCGGCCGC 1 cut(s) 301
CfoI GCGC 3 cut(s) 276, 446, 933
Cfr10I RCCGGY 1 cut(s) 119
Cfr13I GGNCC 1 cut(s) 285
Cfr42I CCGCGG 1 cut(s) 382
Cfr9I CCCGGG 1 cut(s) 295
CseI GACGC 1 cut(s) 335
Csp6I GTAC 1 cut(s) 502
CviAII CATG 3 cut(s) 30, 58, 268
CviQI GTAC 1 cut(s) 502
DdeI CTNAG 1 cut(s) 861
DinI GGCGCC 1 cut(s) 445
DpnI GATC 3 cut(s) 164, 542, 773
DpnII GATC 3 cut(s) 162, 540, 771
DrdI GACNNNNNNGTC 1 cut(s) 640
DriI GACNNNNNGTC 1 cut(s) 331
DseDI GACNNNNNNGTC 1 cut(s) 640
EaeI YGGCCR 2 cut(s) 133, 301
EagI CGGCCG 1 cut(s) 301
Eam1105I GACNNNNNGTC 1 cut(s) 331
EciI GGCGGA 4 cut(s) 359, 380, 431, 634
EclXI CGGCCG 1 cut(s) 301
Eco130I CCWWGG 1 cut(s) 267
Eco24I GRGCYC 1 cut(s) 161
Eco52I CGGCCG 1 cut(s) 301
Eco57I CTGAAG 1 cut(s) 512
Eco72I CACGTG 1 cut(s) 537
Eco88I CYCGRG 1 cut(s) 295
EcoRII CCWGG 1 cut(s) 663
EcoT14I CCWWGG 1 cut(s) 267
EcoT38I GRGCYC 1 cut(s) 161
EgeI GGCGCC 1 cut(s) 445
EheI GGCGCC 1 cut(s) 445
ErhI CCWWGG 1 cut(s) 267
FaeI CATG 3 cut(s) 33, 61, 271
FaiI YATR 6 cut(s) 31, 59, 269, 795, 890, 896
FaqI GGGAC 2 cut(s) 560, 645
FatI CATG 3 cut(s) 29, 57, 267
FauI CCCGC 2 cut(s) 440, 730
FokI GGATG 4 cut(s) 719, 814, 862, 911
FriOI GRGCYC 1 cut(s) 161
FspBI CTAG 1 cut(s) 68
GlaI GCGC 3 cut(s) 275, 445, 932
GsuI CTGGAG 3 cut(s) 337, 857, 935
HaeII RGCGCY 3 cut(s) 277, 447, 934
HaeIII GGCC 3 cut(s) 135, 286, 303
HapII CCGG 4 cut(s) 120, 283, 296, 957
HgaI GACGC 1 cut(s) 335
HhaI GCGC 3 cut(s) 276, 446, 933
Hin1I GRCGYC 3 cut(s) 111, 327, 444
Hin1II CATG 3 cut(s) 33, 61, 271
Hin6I GCGC 3 cut(s) 274, 444, 931
HinP1I GCGC 3 cut(s) 274, 444, 931
HincII GTYRAC 1 cut(s) 427
HindII GTYRAC 1 cut(s) 427
HinfI GANTC 5 cut(s) 126, 419, 480, 560, 573
HpaII CCGG 4 cut(s) 120, 283, 296, 957
HphI GGTGA 2 cut(s) 106, 173
Hpy166II GTNNAC 1 cut(s) 427
Hpy188I TCNGA 2 cut(s) 156, 572
Hpy188III TCNNGA 3 cut(s) 454, 775, 957
Hpy8I GTNNAC 1 cut(s) 427
Hpy99I CGWCG 6 cut(s) 326, 329, 443, 464, 678, 701
HpyAV CCTTC 3 cut(s) 391, 400, 535
HpyCH4III ACNGT 3 cut(s) 75, 221, 362
HpyCH4IV ACGT 4 cut(s) 111, 332, 536, 711
HpyCH4V TGCA 2 cut(s) 471, 877
HpyF10VI GCNNNNNNNGC 5 cut(s) 312, 378, 390, 441, 743
HpyF3I CTNAG 1 cut(s) 861
HpySE526I ACGT 4 cut(s) 111, 332, 536, 711
Hsp92I GRCGYC 3 cut(s) 111, 327, 444
Hsp92II CATG 3 cut(s) 33, 61, 271
HspAI GCGC 3 cut(s) 274, 444, 931
KasI GGCGCC 1 cut(s) 443
Kpn2I TCCGGA 1 cut(s) 956
KspI CCGCGG 1 cut(s) 382
Kzo9I GATC 3 cut(s) 162, 540, 771
LmnI GCTCC 5 cut(s) 271, 318, 689, 820, 910
Lsp1109I GCAGC 1 cut(s) 665
LweI GCATC 1 cut(s) 889
MaeI CTAG 1 cut(s) 68
MaeII ACGT 4 cut(s) 111, 332, 536, 711
MaeIII GTNAC 2 cut(s) 112, 362
MalI GATC 3 cut(s) 164, 542, 773
MboI GATC 3 cut(s) 162, 540, 771
MboII GAAGA 6 cut(s) 505, 508, 535, 931, 937, 945
MfeI CAATTG 1 cut(s) 905
MflI RGATCY 1 cut(s) 540
MhlI GDGCHC 1 cut(s) 161
MluCI AATT 1 cut(s) 905
Mly113I GGCGCC 1 cut(s) 444
MlyI GAGTC 3 cut(s) 413, 554, 582
MmeI TCCRAC 2 cut(s) 240, 248
MroI TCCGGA 1 cut(s) 956
MseI TTAA 1 cut(s) 63
MslI CAYNNNNRTG 1 cut(s) 335
MspA1I CMGCKG 1 cut(s) 381
MspI CCGG 4 cut(s) 120, 283, 296, 957
MspR9I CCNGG 4 cut(s) 283, 296, 297, 665
MunI CAATTG 1 cut(s) 905
Mva1269I GAATGC 1 cut(s) 949
MvaI CCWGG 1 cut(s) 665
MvnI CGCG 3 cut(s) 306, 381, 438
MwoI GCNNNNNNNGC 5 cut(s) 312, 378, 390, 441, 743
NarI GGCGCC 1 cut(s) 444
NciI CCSGG 3 cut(s) 283, 296, 297
NcoI CCATGG 1 cut(s) 267
NdeII GATC 3 cut(s) 162, 540, 771
NlaIII CATG 3 cut(s) 33, 61, 271
NlaIV GGNNCC 2 cut(s) 445, 685
NmuCI GTSAC 1 cut(s) 112
NotI GCGGCCGC 1 cut(s) 301
NspI RCATGY 1 cut(s) 33
OliI CACNNNNGTG 1 cut(s) 335
PasI CCCWGGG 1 cut(s) 664
PciI ACATGT 1 cut(s) 29
PcsI WCGNNNNNNNCGW 1 cut(s) 555
PctI GAATGC 1 cut(s) 949
PfeI GAWTC 2 cut(s) 126, 480
PflFI GACNNNGTC 1 cut(s) 422
PleI GAGTC 3 cut(s) 413, 554, 581
PluTI GGCGCC 1 cut(s) 447
PmaCI CACGTG 1 cut(s) 537
PmlI CACGTG 1 cut(s) 537
PpsI GAGTC 3 cut(s) 413, 554, 581
Ppu21I YACGTR 1 cut(s) 537
PscI ACATGT 1 cut(s) 29
PshAI GACNNNNGTC 1 cut(s) 657
Psp6I CCWGG 1 cut(s) 663
PspCI CACGTG 1 cut(s) 537
PspGI CCWGG 1 cut(s) 663
PspN4I GGNNCC 2 cut(s) 445, 685
PspPI GGNCC 1 cut(s) 285
PsuI RGATCY 1 cut(s) 540
PsyI GACNNNGTC 1 cut(s) 422
RsaI GTAC 1 cut(s) 503
RsaNI GTAC 1 cut(s) 502
RseI CAYNNNNRTG 1 cut(s) 335
SacII CCGCGG 1 cut(s) 382
SaqAI TTAA 1 cut(s) 63
Sau3AI GATC 3 cut(s) 162, 540, 771
Sau96I GGNCC 1 cut(s) 285
SchI GAGTC 3 cut(s) 413, 554, 582
ScrFI CCNGG 4 cut(s) 283, 296, 297, 665
SduI GDGCHC 1 cut(s) 161
SfaNI GCATC 1 cut(s) 889
SfoI GGCGCC 1 cut(s) 445
Sfr303I CCGCGG 1 cut(s) 382
SgrBI CCGCGG 1 cut(s) 382
SmaI CCCGGG 1 cut(s) 297
SmiMI CAYNNNNRTG 1 cut(s) 335
SmlI CTYRAG 2 cut(s) 638, 869
SmoI CTYRAG 2 cut(s) 638, 869
Sse9I AATT 1 cut(s) 905
SspDI GGCGCC 1 cut(s) 443
SspMI CTAG 1 cut(s) 68
StyD4I CCNGG 4 cut(s) 281, 294, 295, 663
StyI CCWWGG 1 cut(s) 267
TaaI ACNGT 3 cut(s) 75, 221, 362
TaiI ACGT 4 cut(s) 114, 335, 539, 714
TaqI TCGA 5 cut(s) 14, 124, 483, 510, 558
TaqII GACCGA 1 cut(s) 473
TasI AATT 1 cut(s) 905
TatI WGTACW 1 cut(s) 501
TauI GCSGC 9 cut(s) 303, 306, 384, 438, 593, 596, 650, 684, 749
TfiI GAWTC 2 cut(s) 126, 480
Tru1I TTAA 1 cut(s) 63
Tru9I TTAA 1 cut(s) 63
TscAI CASTG 2 cut(s) 342, 473
TseFI GTSAC 1 cut(s) 112
TseI GCWGC 1 cut(s) 678
Tsp45I GTSAC 1 cut(s) 112
TspDTI ATGAA 2 cut(s) 17, 938
TspGWI ACGGA 3 cut(s) 412, 662, 704
TspMI CCCGGG 1 cut(s) 295
TspRI CASTG 2 cut(s) 342, 473
Tth111I GACNNNGTC 1 cut(s) 422
XceI RCATGY 1 cut(s) 33
XmaI CCCGGG 1 cut(s) 295
XspI CTAG 1 cut(s) 68
ZraI GACGTC 1 cut(s) 112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.