Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004571.1

Orthogroup ID

OG0007571

Physical Location & Seq

Genomic Coordinates Forward (+)

80835 .. 86356

Gene Structure 5522 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1542 bp

atgaaaaagttgcacttgagtactgatgttggtcaacctgactttagtcctcctgagttttctctgtccgtctgctacacgaagttactccagaccgaagctgaaaaagcatcaagtattatgtggatcatcctgaagaaatcaacaaagcttccaaaaacgaaggctcaactatccgggattcctggaatgacagtccttattctttcttggttgatcacattctactcattctggcaacttattgaattgcatgagatagttccgggaaagcgatttgatcgttacccagaactagggcagcattgttttggacccaaactagggtattggatcgtcatgccacaacaattgattgtgcaagtggcttcaggcattgtgtattgcgtcacaggtgggaagtcactgaagaaattctttgaactcctctggccagtctggggtgattatagaacaacatacttcatcctctttttcatttgcttgcaatttgggatctcccaagctccaaatttcaattctttgaaaggagtttctctcctggctgcactcatgtctattggttatgcctcgatagcatttgtggcatcaacaattcagggtgtaaatcatcgtgagaatgtgacctatgggattcggtcttcgacacttgctggtcaaatctttgatctcttgaatgggtgtggaacaatagcatttgcttttgcaggacatagtgtagctctagaaattcaagctacaattccatcaactccagagaaaccatcaaaacatgctatgtggaaaggtgttgtggtagcttatgttgttgtagcgttttgctatctctcagtttcactatccggctactgggcttatggcagtcatgtagaggatgatgttctcatctcactagataagcctgcatggctaattgcagcggctaatttcatggtgttcattcatgttattggaagttatcagatctttagtatgcctgtatttgaccagattgagcaatatctagtagaaaatcgaggtttcacccctggactacctttgcgcatcattgctcgtagtttatatgttgctgcagcagggtttattgcaatgtgcattccattttttggaggcttgttaggattatttggaggattggtattcgcatccacatcattttttatgccttgtattatgtggattgtcacccaaaaaccaaaagcatttagctttcactggactttttcttggcggtggttggatgtggtttggatggtggctgccattggtggatctggtttgggtcgcgggtgctctgtcggactgatgatggagggtggtcggatctgggcattctggctggtgcttggtggtggtgctgtggcgaaagggctgggttctccttcgttctatgggtggtggctgaggtcgacatcgcggcctgctcgtgagagcagcccggatccaggctatacgggatctttccggctttctctgcgagcactcctgggcggagaccttggcgtgtggggcgacgatggtggagcgctggcggtggactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0016020 GO:0022857 GO:0034220 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098656 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

513

Amino Acids

56.41

Weight (kDa)

8.91

Isoelectric Point (pI)

32.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	51 - 422	2.1e-74	Transmembrane amino acid transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007571)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71680 AT1G71680
fragaria_vesca	FvH4_5g33070
malus_domestica	MD08G1215100.v1.1 MD15G1398900.v1.1
prunus_persica	Prupe.1G546600_v2.0.a1
pyrus_communis	pycom15g35780
rosa_chinensis	RchiOBHm_Chr4g0414671 RchiOBHm_Chr7g0231241
rosa_laevigata	RLG00000001426 RLG00000008126
rosa_multiflora	Rmu_sc0001192.1_g000019 Rmu_sc0004571.1_g000017
rosa_roxburghii	Rroxscaffold_3G00229410 Rroxscaffold_5G00358480
rosa_rugosa	Rorug04G0129400 Rorug07G0265400
rosa_samantha	Rh4AG187700 Rh4CG200000 Rh7AG418900 Rh7BG394300 Rh7CG438600
rosa_wichuraiana	Rw4G016050 Rw7G034640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1043
AccB7I	CCANNNNNTGG	1 cut(s)	1106
AccI	GTMKAC	1 cut(s)	1409
AccII	CGCG	2 cut(s)	1287, 1417
AciI	CCGC	6 cut(s)	920, 1231, 1287, 1417, 1491, 1532
AclWI	GGATC	8 cut(s)	134, 341, 503, 1279, 1331, 1436, 1449, 1465
AcoI	YGGCCR	1 cut(s)	431
AcsI	RAATTY	3 cut(s)	413, 511, 729
AcuI	CTGAAG	3 cut(s)	155, 354, 428
AfaI	GTAC	1 cut(s)	22
AfeI	AGCGCT	1 cut(s)	1527
AfiI	CCNNNNNNNGG	7 cut(s)	296, 323, 324, 440, 849, 1106, 1445
AgsI	TTSAA	6 cut(s)	248, 422, 517, 526, 676, 734
AjnI	CCWGG	5 cut(s)	184, 540, 1027, 1444, 1485
AjuI	GAANNNNNNNTTGG	2 cut(s)	502, 534
AluBI	AGCT	7 cut(s)	101, 151, 506, 722, 737, 800, 1209
AluI	AGCT	7 cut(s)	101, 151, 506, 722, 737, 800, 1209
Alw21I	GWGCWC	2 cut(s)	1295, 1483
Alw26I	GTCTC	1 cut(s)	1488
AlwI	GGATC	8 cut(s)	134, 341, 503, 1279, 1331, 1436, 1449, 1465
Aor51HI	AGCGCT	1 cut(s)	1527
AoxI	GGCC	2 cut(s)	431, 1418
ApeKI	GCWGC	7 cut(s)	301, 545, 917, 1070, 1073, 1259, 1434
ApoI	RAATTY	3 cut(s)	413, 511, 729
Asp700I	GAANNNNTTC	1 cut(s)	413
AspLEI	GCGC	2 cut(s)	1044, 1528
AspS9I	GGNCC	1 cut(s)	314
AsuC2I	CCSGG	3 cut(s)	178, 267, 1439
AsuHPI	GGTGA	3 cut(s)	455, 1015, 1177
AvaII	GGWCC	1 cut(s)	314
BalI	TGGCCA	1 cut(s)	433
BamHI	GGATCC	1 cut(s)	1441
BauI	CACGAG	1 cut(s)	1425
BbsI	GAAGAC	1 cut(s)	633
Bbv12I	GWGCWC	2 cut(s)	1295, 1483
BbvCI	CCTCAGC	1 cut(s)	1403
BbvI	GCAGC	7 cut(s)	313, 532, 929, 1057, 1085, 1246, 1446
BccI	CCATC	5 cut(s)	754, 772, 1246, 1303, 1511
BciT130I	CCWGG	5 cut(s)	186, 542, 1029, 1446, 1487
BclI	TGATCA	1 cut(s)	216
BcnI	CCSGG	3 cut(s)	178, 267, 1439
BcoDI	GTCTC	1 cut(s)	1488
BfaI	CTAG	5 cut(s)	296, 323, 725, 893, 1004
BfmI	CTRYAG	1 cut(s)	1071
BfoI	RGCGCY	1 cut(s)	1529
BglI	GCCNNNNNGGC	1 cut(s)	907
BglII	AGATCT	1 cut(s)	963
BisI	GCNGC	9 cut(s)	302, 546, 918, 921, 1071, 1074, 1260, 1418, 1435
BlsI	GCNGC	9 cut(s)	303, 547, 919, 922, 1072, 1075, 1261, 1419, 1436
BmcAI	AGTACT	1 cut(s)	22
Bme1390I	CCNGG	8 cut(s)	178, 186, 267, 542, 1029, 1439, 1446, 1487
Bme18I	GGWCC	1 cut(s)	314
BmgT120I	GGNCC	1 cut(s)	314
BmiI	GGNNCC	2 cut(s)	316, 1443
BmrFI	CCNGG	8 cut(s)	178, 186, 267, 542, 1029, 1439, 1446, 1487
BmrI	ACTGGG	1 cut(s)	859
BmsI	GCATC	4 cut(s)	119, 596, 1053, 1154
BmuI	ACTGGG	1 cut(s)	859
BoxI	GACNNNNGTC	1 cut(s)	45
BpiI	GAAGAC	1 cut(s)	633
BplI	GAGNNNNNCTC	2 cut(s)	522, 554
BpmI	CTGGAG	2 cut(s)	74, 738
Bpu10I	CCTNAGC	1 cut(s)	1403
BpuEI	CTTGAG	1 cut(s)	37
BpuMI	CCSGG	3 cut(s)	178, 267, 1439
BsaI	GGTCTC	1 cut(s)	1488
BsaJI	CCNNGG	3 cut(s)	1027, 1486, 1498
BsaXI	ACNNNNNCTCC	2 cut(s)	1122, 1152
Bsc4I	CCNNNNNNNGG	7 cut(s)	296, 323, 324, 440, 849, 1106, 1445
Bse1I	ACTGG	3 cut(s)	434, 854, 1220
Bse3DI	GCAATG	2 cut(s)	1047, 1095
BseBI	CCWGG	5 cut(s)	186, 542, 1029, 1446, 1487
BseDI	CCNNGG	3 cut(s)	1027, 1486, 1498
BseGI	GGATG	6 cut(s)	129, 465, 880, 1145, 1246, 1257
BseLI	CCNNNNNNNGG	7 cut(s)	296, 323, 324, 440, 849, 1106, 1445
BseMI	GCAATG	2 cut(s)	1047, 1095
BseMII	CTCAG	3 cut(s)	45, 843, 1394
BseNI	ACTGG	3 cut(s)	434, 854, 1220
BseRI	GAGGAG	1 cut(s)	416
BseXI	GCAGC	7 cut(s)	313, 532, 929, 1057, 1085, 1246, 1446
BseYI	CCCAGC	1 cut(s)	1372
BsgI	GTGCAG	1 cut(s)	531
Bsh1236I	CGCG	2 cut(s)	1287, 1417
BshFI	GGCC	2 cut(s)	433, 1420
BsiHKAI	GWGCWC	2 cut(s)	1295, 1483
BsiSI	CCGG	5 cut(s)	177, 266, 843, 1439, 1465
BslI	CCNNNNNNNGG	7 cut(s)	296, 323, 324, 440, 849, 1106, 1445
BsmAI	GTCTC	1 cut(s)	1488
BsmI	GAATGC	2 cut(s)	1095, 1331
BsnI	GGCC	2 cut(s)	433, 1420
Bso31I	GGTCTC	1 cut(s)	1488
Bsp1286I	GDGCHC	2 cut(s)	1295, 1483
BspACI	CCGC	6 cut(s)	920, 1231, 1287, 1417, 1491, 1532
BspANI	GGCC	2 cut(s)	433, 1420
BspCNI	CTCAG	3 cut(s)	46, 842, 1395
BspFNI	CGCG	2 cut(s)	1287, 1417
BspLI	GGNNCC	2 cut(s)	316, 1443
BspMAI	CTGCAG	1 cut(s)	1075
BspPI	GGATC	8 cut(s)	134, 341, 503, 1279, 1331, 1436, 1449, 1465
BspTNI	GGTCTC	1 cut(s)	1488
BsrDI	GCAATG	2 cut(s)	1047, 1095
BsrI	ACTGG	3 cut(s)	434, 854, 1220
BssECI	CCNNGG	3 cut(s)	1027, 1486, 1498
BssSI	CACGAG	1 cut(s)	1425
BssT1I	CCWWGG	1 cut(s)	1498
Bst2BI	CACGAG	1 cut(s)	1425
Bst2UI	CCWGG	5 cut(s)	186, 542, 1029, 1446, 1487
Bst4CI	ACNGT	1 cut(s)	196
BstC8I	GCNNGC	5 cut(s)	485, 903, 1422, 1479, 1530
BstDEI	CTNAG	3 cut(s)	54, 829, 1403
BstF5I	GGATG	6 cut(s)	129, 465, 880, 1145, 1246, 1257
BstFNI	CGCG	2 cut(s)	1287, 1417
BstH2I	RGCGCY	1 cut(s)	1529
BstHHI	GCGC	2 cut(s)	1044, 1528
BstMAI	GTCTC	1 cut(s)	1488
BstMWI	GCNNNNNNNGC	6 cut(s)	107, 575, 584, 907, 1474, 1509
BstNI	CCWGG	5 cut(s)	186, 542, 1029, 1446, 1487
BstNSI	RCATGY	1 cut(s)	776
BstPAI	GACNNNNGTC	1 cut(s)	45
BstSCI	CCNGG	8 cut(s)	176, 184, 265, 540, 1027, 1437, 1444, 1485
BstSFI	CTRYAG	1 cut(s)	1071
BstUI	CGCG	2 cut(s)	1287, 1417
BstV1I	GCAGC	7 cut(s)	313, 532, 929, 1057, 1085, 1246, 1446
BstV2I	GAAGAC	1 cut(s)	633
BstX2I	RGATCY	6 cut(s)	495, 963, 1271, 1323, 1441, 1457
BstYI	RGATCY	6 cut(s)	495, 963, 1271, 1323, 1441, 1457
BsuRI	GGCC	2 cut(s)	433, 1420
BtgZI	GCGATG	1 cut(s)	1398
BtsCI	GGATG	6 cut(s)	129, 465, 880, 1145, 1246, 1257
BtsIMutI	CAGTG	2 cut(s)	404, 1213
Cac8I	GCNNGC	5 cut(s)	485, 903, 1422, 1479, 1530
CfoI	GCGC	2 cut(s)	1044, 1528
Cfr13I	GGNCC	1 cut(s)	314
CseI	GACGC	1 cut(s)	376
Csp6I	GTAC	1 cut(s)	21
CspCI	CAANNNNNGTGG	2 cut(s)	333, 368
CviAII	CATG	8 cut(s)	254, 340, 553, 773, 866, 906, 931, 944
CviQI	GTAC	1 cut(s)	21
DdeI	CTNAG	3 cut(s)	54, 829, 1403
EaeI	YGGCCR	1 cut(s)	431
EciI	GGCGGA	1 cut(s)	1506
Eco130I	CCWWGG	1 cut(s)	1498
Eco31I	GGTCTC	1 cut(s)	1488
Eco47I	GGWCC	1 cut(s)	314
Eco47III	AGCGCT	1 cut(s)	1527
Eco57I	CTGAAG	3 cut(s)	155, 354, 428
EcoRII	CCWGG	5 cut(s)	184, 540, 1027, 1444, 1485
EcoT14I	CCWWGG	1 cut(s)	1498
ErhI	CCWWGG	1 cut(s)	1498
FaeI	CATG	8 cut(s)	257, 343, 556, 776, 869, 909, 934, 947
FalI	AAGNNNNNCTT	3 cut(s)	31, 401, 433
FatI	CATG	8 cut(s)	253, 339, 552, 772, 865, 905, 930, 943
FauI	CCCGC	1 cut(s)	1280
FbaI	TGATCA	1 cut(s)	216
FblI	GTMKAC	1 cut(s)	1409
Fnu4HI	GCNGC	9 cut(s)	302, 546, 918, 921, 1071, 1074, 1260, 1418, 1435
FokI	GGATG	6 cut(s)	116, 452, 887, 1132, 1253, 1264
Fsp4HI	GCNGC	9 cut(s)	302, 546, 918, 921, 1071, 1074, 1260, 1418, 1435
FspBI	CTAG	5 cut(s)	296, 323, 725, 893, 1004
FspI	TGCGCA	1 cut(s)	1043
GlaI	GCGC	2 cut(s)	1043, 1527
GluI	GCNGC	9 cut(s)	302, 546, 918, 921, 1071, 1074, 1260, 1418, 1435
GsaI	CCCAGC	1 cut(s)	1376
GsuI	CTGGAG	2 cut(s)	74, 738
HaeII	RGCGCY	1 cut(s)	1529
HaeIII	GGCC	2 cut(s)	433, 1420
HapII	CCGG	5 cut(s)	177, 266, 843, 1439, 1465
HgaI	GACGC	1 cut(s)	376
HhaI	GCGC	2 cut(s)	1044, 1528
Hin1II	CATG	8 cut(s)	257, 343, 556, 776, 869, 909, 934, 947
Hin6I	GCGC	2 cut(s)	1042, 1526
HinP1I	GCGC	2 cut(s)	1042, 1526
HincII	GTYRAC	2 cut(s)	35, 1410
HindII	GTYRAC	2 cut(s)	35, 1410
HindIII	AAGCTT	1 cut(s)	149
HinfI	GANTC	2 cut(s)	181, 634
HpaII	CCGG	5 cut(s)	177, 266, 843, 1439, 1465
HphI	GGTGA	3 cut(s)	455, 1015, 1177
Hpy166II	GTNNAC	3 cut(s)	35, 1410, 1537
Hpy188I	TCNGA	3 cut(s)	963, 1301, 1323
Hpy188III	TCNNGA	8 cut(s)	53, 91, 133, 614, 673, 725, 755, 1427
Hpy8I	GTNNAC	3 cut(s)	35, 1410, 1537
Hpy99I	CGWCG	1 cut(s)	1517
HpyAV	CCTTC	2 cut(s)	157, 1392
HpyCH4III	ACNGT	1 cut(s)	196
HpyF10VI	GCNNNNNNNGC	6 cut(s)	107, 575, 584, 907, 1474, 1509
HpyF3I	CTNAG	3 cut(s)	54, 829, 1403
Hsp92II	CATG	8 cut(s)	257, 343, 556, 776, 869, 909, 934, 947
HspAI	GCGC	2 cut(s)	1042, 1526
Ksp22I	TGATCA	1 cut(s)	216
LmnI	GCTCC	2 cut(s)	511, 1523
Lsp1109I	GCAGC	7 cut(s)	313, 532, 929, 1057, 1085, 1246, 1446
LweI	GCATC	4 cut(s)	119, 596, 1053, 1154
MaeI	CTAG	5 cut(s)	296, 323, 725, 893, 1004
MaeIII	GTNAC	6 cut(s)	84, 284, 388, 402, 622, 1183
MboII	GAAGA	3 cut(s)	148, 421, 633
MfeI	CAATTG	1 cut(s)	350
MflI	RGATCY	6 cut(s)	495, 963, 1271, 1323, 1441, 1457
MhlI	GDGCHC	2 cut(s)	1295, 1483
MlsI	TGGCCA	1 cut(s)	433
MluNI	TGGCCA	1 cut(s)	433
MmeI	TCCRAC	3 cut(s)	1218, 1279, 1301
Mox20I	TGGCCA	1 cut(s)	433
MroXI	GAANNNNTTC	1 cut(s)	413
MscI	TGGCCA	1 cut(s)	433
Msp20I	TGGCCA	1 cut(s)	433
MspA1I	CMGCKG	1 cut(s)	920
MspI	CCGG	5 cut(s)	177, 266, 843, 1439, 1465
MspR9I	CCNGG	8 cut(s)	178, 186, 267, 542, 1029, 1439, 1446, 1487
MunI	CAATTG	1 cut(s)	350
Mva1269I	GAATGC	2 cut(s)	1095, 1331
MvaI	CCWGG	5 cut(s)	186, 542, 1029, 1446, 1487
MvnI	CGCG	2 cut(s)	1287, 1417
MwoI	GCNNNNNNNGC	6 cut(s)	107, 575, 584, 907, 1474, 1509
NciI	CCSGG	3 cut(s)	178, 267, 1439
NlaIII	CATG	8 cut(s)	257, 343, 556, 776, 869, 909, 934, 947
NlaIV	GGNNCC	2 cut(s)	316, 1443
NmuCI	GTSAC	4 cut(s)	388, 402, 622, 1183
NsbI	TGCGCA	1 cut(s)	1043
NspI	RCATGY	1 cut(s)	776
PctI	GAATGC	2 cut(s)	1095, 1331
PdmI	GAANNNNTTC	1 cut(s)	413
PfeI	GAWTC	2 cut(s)	181, 634
PflMI	CCANNNNNTGG	1 cut(s)	1106
PfoI	TCCNGGA	3 cut(s)	176, 184, 265
PkrI	GCNGC	9 cut(s)	303, 547, 919, 922, 1072, 1075, 1261, 1419, 1436
PshAI	GACNNNNGTC	1 cut(s)	45
Psp6I	CCWGG	5 cut(s)	184, 540, 1027, 1444, 1485
PspFI	CCCAGC	1 cut(s)	1372
PspGI	CCWGG	5 cut(s)	184, 540, 1027, 1444, 1485
PspN4I	GGNNCC	2 cut(s)	316, 1443
PspPI	GGNCC	1 cut(s)	314
PstI	CTGCAG	1 cut(s)	1075
PsuI	RGATCY	6 cut(s)	495, 963, 1271, 1323, 1441, 1457
RsaI	GTAC	1 cut(s)	22
RsaNI	GTAC	1 cut(s)	21
SalI	GTCGAC	1 cut(s)	1408
SatI	GCNGC	9 cut(s)	302, 546, 918, 921, 1071, 1074, 1260, 1418, 1435
Sau96I	GGNCC	1 cut(s)	314
ScaI	AGTACT	1 cut(s)	22
ScrFI	CCNGG	8 cut(s)	178, 186, 267, 542, 1029, 1439, 1446, 1487
SduI	GDGCHC	2 cut(s)	1295, 1483
SfaNI	GCATC	4 cut(s)	119, 596, 1053, 1154
SfcI	CTRYAG	1 cut(s)	1071
SinI	GGWCC	1 cut(s)	314
SmlI	CTYRAG	1 cut(s)	16
SmoI	CTYRAG	1 cut(s)	16
SsiI	CCGC	6 cut(s)	920, 1231, 1287, 1417, 1491, 1532
SspMI	CTAG	5 cut(s)	296, 323, 725, 893, 1004
StyD4I	CCNGG	8 cut(s)	176, 184, 265, 540, 1027, 1437, 1444, 1485
StyI	CCWWGG	1 cut(s)	1498
TaaI	ACNGT	1 cut(s)	196
TaqI	TCGA	4 cut(s)	572, 644, 1015, 1409
TaqII	GACCGA	2 cut(s)	110, 627
TatI	WGTACW	1 cut(s)	20
TauI	GCSGC	2 cut(s)	923, 1420
TfiI	GAWTC	2 cut(s)	181, 634
TscAI	CASTG	2 cut(s)	411, 1220
TseFI	GTSAC	4 cut(s)	388, 402, 622, 1183
TseI	GCWGC	7 cut(s)	301, 545, 917, 1070, 1073, 1259, 1434
Tsp45I	GTSAC	4 cut(s)	388, 402, 622, 1183
TspDTI	ATGAA	6 cut(s)	17, 454, 466, 919, 928, 932
TspGWI	ACGGA	1 cut(s)	58
TspRI	CASTG	2 cut(s)	411, 1220
Van91I	CCANNNNNTGG	1 cut(s)	1106
VpaK11BI	GGWCC	1 cut(s)	314
XapI	RAATTY	3 cut(s)	413, 511, 729
XbaI	TCTAGA	1 cut(s)	724
XceI	RCATGY	1 cut(s)	776
XmiI	GTMKAC	1 cut(s)	1409
XmnI	GAANNNNTTC	1 cut(s)	413
XspI	CTAG	5 cut(s)	296, 323, 725, 893, 1004
ZrmI	AGTACT	1 cut(s)	22

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.