Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004711.1

Orthogroup ID

OG0008705

Physical Location & Seq

Genomic Coordinates Forward (+)

117799 .. 120132

Gene Structure 2334 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

atgtctattggggcaaaaaaactttccagtgagattttcagcaaattccggtgggcggcagctggtgacaggaatccggcgaccggtgaccggattccggcgaaaattggccggattccggcggccggtgacagacttcgacgaagtctcctatgtcgcagaaggcgagagaagatggggaagaatttcagaaaacgaagcgctccggccgacgataatgacgatcctgaaaagctcagcgacggcgaagaagaaaggagattggcgctggaggaggtcaagtttcttcagaagcagaggcagaggaagtctgggatccctgccctaactactggttccgacgcacaccctcctcctaatgcgaaggacaagaacaacgactccggcaagagcaagaacaagaaagctactggcggccactctcctggcaataataacgctgaaggcggaggaggaggaggaggcggcggcgacggggagaatgatgattgggctcttactcggacctttgctgaggaaactgaagaagccgacgaagatccgaatatgttgagttttattgaacgagagatagcaaagaagaagggcaagaaagtagaagcgccggatgaagtcgagaatgaattgcagcgtgctgaggatgagttgtacaagatacctgaccatctgaaagtgaaaaagcgaaactcggaagagagctcgactcagtggactactgggattgccgaggttcagctccccatcgaatacaagttgagaaatatcgaggagactgaggctgcaaagaagtttttgcatgaaaagcggcttgtaggacagacaaaatcagaatttagcatcccctcaagttacagtgctgattatttccagcgtggcagggattatgctgaaaaacttagacgagaacatcctgagctctacaaagacaaaagttcacaggataatggtggtgttcccaaacaaaatgatactggcacagatgcagcaggacaaaggcaagctgcaacagatgagttcatgcttgagcgcttccgcaaaagagagcgtcaccgtggaatgcggagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009642 GO:0009644 GO:0009892 GO:0010099 GO:0010605 GO:0016604 GO:0016607 GO:0019222 GO:0022622 GO:0031323 GO:0031324 GO:0031396 GO:0031397 GO:0031399 GO:0031400 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0043086 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044092 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0048364 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048731 GO:0048856 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051239 GO:0051246 GO:0051248 GO:0051338 GO:0051348 GO:0051438 GO:0051444 GO:0055121 GO:0060255 GO:0065007 GO:0065009 GO:0070013 GO:0080022 GO:0080090 GO:0099402 GO:1903320 GO:1903321 GO:1904666 GO:1904667 GO:2000026 GO:2000030

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hep_59

Protein Analysis

355

Amino Acids

39.95

Weight (kDa)

9.17

Isoelectric Point (pI)

60.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hep_59	PF07052	169 - 265	4.7e-26	Hepatocellular carcinoma-associated antigen 59

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008705)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02330
fragaria_vesca	FvH4_1g26040 FvH4_1g26040 FvH4_1g26040 FvH4_1g26040 FvH4_1g26040
malus_domestica	MD17G1285900.v1.1
prunus_persica	Prupe.3G000500_v2.0.a1 Prupe.3G000500_v2.0.a1
pyrus_communis	pycom17g28170
rosa_chinensis	RchiOBHm_Chr3g0485501
rosa_laevigata	RLG00000023147
rosa_multiflora	Rmu_co8354243.1_g000001 Rmu_sc0004711.1_g000026
rosa_roxburghii	Rroxscaffold_6G00396740 Rroxscaffold_6G00396990
rosa_rugosa	Rorug03G0218600 Rorug03G0218600
rosa_samantha	Rh3AG268100 Rh3BG303600 Rh3CG301700 Rh3DG298500
rosa_wichuraiana	Rw3G023910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	9 cut(s)	56, 122, 414, 447, 465, 468, 805, 1033, 1060
AclWI	GGATC	4 cut(s)	218, 310, 323, 533
AcoI	YGGCCR	4 cut(s)	109, 123, 207, 415
AcsI	RAATTY	3 cut(s)	44, 184, 830
AcuI	CTGAAG	3 cut(s)	272, 462, 543
AfaI	GTAC	1 cut(s)	650
AfeI	AGCGCT	2 cut(s)	202, 1028
AfiI	CCNNNNNNNGG	6 cut(s)	55, 83, 90, 97, 118, 125
AgeI	ACCGGT	1 cut(s)	83
AgsI	TTSAA	1 cut(s)	563
AjnI	CCWGG	1 cut(s)	424
AloI	GAACNNNNNNTCC	2 cut(s)	365, 397
AluBI	AGCT	7 cut(s)	62, 235, 407, 699, 736, 916, 1001
AluI	AGCT	7 cut(s)	62, 235, 407, 699, 736, 916, 1001
Alw21I	GWGCWC	2 cut(s)	701, 918
Alw26I	GTCTC	2 cut(s)	152, 764
AlwI	GGATC	4 cut(s)	218, 310, 323, 533
Aor51HI	AGCGCT	2 cut(s)	202, 1028
AoxI	GGCC	4 cut(s)	109, 123, 207, 415
ApeKI	GCWGC	5 cut(s)	59, 628, 779, 983, 1001
ApoI	RAATTY	3 cut(s)	44, 184, 830
AsiGI	ACCGGT	1 cut(s)	83
Asp700I	GAANNNNTTC	1 cut(s)	185
AspLEI	GCGC	4 cut(s)	203, 268, 604, 1029
AspS9I	GGNCC	1 cut(s)	504
AsuHPI	GGTGA	4 cut(s)	77, 98, 140, 1040
AvaII	GGWCC	1 cut(s)	504
BamHI	GGATCC	1 cut(s)	315
BanII	GRGCYC	3 cut(s)	496, 701, 918
Bbv12I	GWGCWC	2 cut(s)	701, 918
BbvCI	CCTCAGC	2 cut(s)	513, 636
BbvI	GCAGC	5 cut(s)	71, 640, 766, 988, 995
BccI	CCATC	3 cut(s)	169, 672, 749
BceAI	ACGGC	1 cut(s)	259
BciT130I	CCWGG	1 cut(s)	426
BcoDI	GTCTC	2 cut(s)	152, 764
BfoI	RGCGCY	4 cut(s)	204, 269, 605, 1030
BlpI	GCTNAGC	1 cut(s)	236
Bme1390I	CCNGG	1 cut(s)	426
Bme18I	GGWCC	1 cut(s)	504
BmgT120I	GGNCC	1 cut(s)	504
BmiI	GGNNCC	2 cut(s)	317, 337
BmrFI	CCNGG	1 cut(s)	426
BmrI	ACTGGG	1 cut(s)	726
BmsI	GCATC	2 cut(s)	846, 970
BmuI	ACTGGG	1 cut(s)	726
BplI	GAGNNNNNCTC	2 cut(s)	688, 720
BpmI	CTGGAG	1 cut(s)	290
Bpu10I	CCTNAGC	3 cut(s)	513, 636, 912
Bpu1102I	GCTNAGC	1 cut(s)	236
BpuEI	CTTGAG	2 cut(s)	829, 1043
BsaJI	CCNNGG	2 cut(s)	726, 1051
BsaWI	WCCGGW	3 cut(s)	48, 83, 90
BsaXI	ACNNNNNCTCC	6 cut(s)	132, 162, 266, 296, 365, 395
Bsc4I	CCNNNNNNNGG	6 cut(s)	55, 83, 90, 97, 118, 125
Bse118I	RCCGGY	2 cut(s)	83, 125
Bse1I	ACTGG	5 cut(s)	27, 337, 415, 721, 976
BseBI	CCWGG	1 cut(s)	426
BseDI	CCNNGG	2 cut(s)	726, 1051
BseGI	GGATG	4 cut(s)	613, 646, 837, 907
BseLI	CCNNNNNNNGG	6 cut(s)	55, 83, 90, 97, 118, 125
BseMII	CTCAG	6 cut(s)	250, 504, 627, 719, 765, 903
BseNI	ACTGG	5 cut(s)	27, 337, 415, 721, 976
BseRI	GAGGAG	7 cut(s)	287, 342, 465, 468, 471, 474, 782
BseX3I	CGGCCG	2 cut(s)	123, 207
BseXI	GCAGC	5 cut(s)	71, 640, 766, 988, 995
Bsh1285I	CGRYCG	3 cut(s)	84, 126, 210
BshFI	GGCC	4 cut(s)	111, 125, 209, 417
BshTI	ACCGGT	1 cut(s)	83
BsiEI	CGRYCG	3 cut(s)	84, 126, 210
BsiHKAI	GWGCWC	2 cut(s)	701, 918
BslI	CCNNNNNNNGG	6 cut(s)	55, 83, 90, 97, 118, 125
BsmAI	GTCTC	2 cut(s)	152, 764
BsmI	GAATGC	1 cut(s)	1062
BsnI	GGCC	4 cut(s)	111, 125, 209, 417
Bsp1286I	GDGCHC	3 cut(s)	496, 701, 918
Bsp1407I	TGTACA	1 cut(s)	648
Bsp143I	GATC	3 cut(s)	223, 315, 538
Bsp1720I	GCTNAGC	1 cut(s)	236
BspACI	CCGC	9 cut(s)	56, 122, 414, 447, 465, 468, 805, 1033, 1060
BspANI	GGCC	4 cut(s)	111, 125, 209, 417
BspCNI	CTCAG	6 cut(s)	249, 505, 628, 718, 766, 904
BspLI	GGNNCC	2 cut(s)	317, 337
BspPI	GGATC	4 cut(s)	218, 310, 323, 533
BsrFI	RCCGGY	2 cut(s)	83, 125
BsrGI	TGTACA	1 cut(s)	648
BsrI	ACTGG	5 cut(s)	27, 337, 415, 721, 976
BssAI	RCCGGY	2 cut(s)	83, 125
BssECI	CCNNGG	2 cut(s)	726, 1051
BssMI	GATC	3 cut(s)	223, 315, 538
Bst2UI	CCWGG	1 cut(s)	426
Bst4CI	ACNGT	2 cut(s)	854, 1052
Bst6I	CTCTTC	1 cut(s)	687
BstAUI	TGTACA	1 cut(s)	648
BstC8I	GCNNGC	2 cut(s)	633, 999
BstDEI	CTNAG	7 cut(s)	236, 513, 636, 705, 774, 896, 912
BstDSI	CCRYGG	1 cut(s)	1051
BstEII	GGTNACC	1 cut(s)	86
BstF5I	GGATG	4 cut(s)	613, 646, 837, 907
BstH2I	RGCGCY	4 cut(s)	204, 269, 605, 1030
BstHHI	GCGC	4 cut(s)	203, 268, 604, 1029
BstKTI	GATC	3 cut(s)	226, 318, 541
BstMAI	GTCTC	2 cut(s)	152, 764
BstMBI	GATC	3 cut(s)	223, 315, 538
BstMCI	CGRYCG	3 cut(s)	84, 126, 210
BstMWI	GCNNNNNNNGC	1 cut(s)	802
BstNI	CCWGG	1 cut(s)	426
BstPI	GGTNACC	1 cut(s)	86
BstSCI	CCNGG	1 cut(s)	424
BstV1I	GCAGC	5 cut(s)	71, 640, 766, 988, 995
BstX2I	RGATCY	2 cut(s)	315, 538
BstXI	CCANNNNNNTGG	1 cut(s)	425
BstYI	RGATCY	2 cut(s)	315, 538
BstZI	CGGCCG	2 cut(s)	123, 207
BsuRI	GGCC	4 cut(s)	111, 125, 209, 417
BtgI	CCRYGG	1 cut(s)	1051
BtsCI	GGATG	4 cut(s)	613, 646, 837, 907
BtsIMutI	CAGTG	3 cut(s)	34, 713, 859
Cac8I	GCNNGC	2 cut(s)	633, 999
CfoI	GCGC	4 cut(s)	203, 268, 604, 1029
Cfr10I	RCCGGY	2 cut(s)	83, 125
Cfr13I	GGNCC	1 cut(s)	504
CseI	GACGC	2 cut(s)	350, 1034
Csp6I	GTAC	1 cut(s)	649
CspAI	ACCGGT	1 cut(s)	83
CviAII	CATG	2 cut(s)	797, 1018
CviQI	GTAC	1 cut(s)	649
DdeI	CTNAG	7 cut(s)	236, 513, 636, 705, 774, 896, 912
DpnI	GATC	3 cut(s)	225, 317, 540
DpnII	GATC	3 cut(s)	223, 315, 538
EaeI	YGGCCR	4 cut(s)	109, 123, 207, 415
EagI	CGGCCG	2 cut(s)	123, 207
Eam1104I	CTCTTC	1 cut(s)	687
EarI	CTCTTC	1 cut(s)	687
EciI	GGCGGA	1 cut(s)	462
Ecl136II	GAGCTC	2 cut(s)	699, 916
EclXI	CGGCCG	2 cut(s)	123, 207
Eco24I	GRGCYC	3 cut(s)	496, 701, 918
Eco47I	GGWCC	1 cut(s)	504
Eco47III	AGCGCT	2 cut(s)	202, 1028
Eco52I	CGGCCG	2 cut(s)	123, 207
Eco53kI	GAGCTC	2 cut(s)	699, 916
Eco57I	CTGAAG	3 cut(s)	272, 462, 543
Eco91I	GGTNACC	1 cut(s)	86
EcoICRI	GAGCTC	2 cut(s)	699, 916
EcoO65I	GGTNACC	1 cut(s)	86
EcoRII	CCWGG	1 cut(s)	424
EcoT38I	GRGCYC	3 cut(s)	496, 701, 918
FaeI	CATG	2 cut(s)	800, 1021
FaiI	YATR	5 cut(s)	154, 548, 798, 885, 1019
FatI	CATG	2 cut(s)	796, 1017
FokI	GGATG	4 cut(s)	620, 653, 824, 894
FriOI	GRGCYC	3 cut(s)	496, 701, 918
GlaI	GCGC	4 cut(s)	202, 267, 603, 1028
GsuI	CTGGAG	1 cut(s)	290
HaeII	RGCGCY	4 cut(s)	204, 269, 605, 1030
HaeIII	GGCC	4 cut(s)	111, 125, 209, 417
HgaI	GACGC	2 cut(s)	350, 1034
HhaI	GCGC	4 cut(s)	203, 268, 604, 1029
Hin1II	CATG	2 cut(s)	800, 1021
Hin6I	GCGC	4 cut(s)	201, 266, 602, 1027
HinP1I	GCGC	4 cut(s)	201, 266, 602, 1027
HinfI	GANTC	5 cut(s)	73, 94, 115, 380, 703
HphI	GGTGA	4 cut(s)	77, 98, 140, 1040
Hpy166II	GTNNAC	2 cut(s)	711, 935
Hpy188I	TCNGA	8 cut(s)	191, 291, 340, 504, 543, 669, 691, 829
Hpy188III	TCNNGA	3 cut(s)	227, 616, 911
Hpy8I	GTNNAC	2 cut(s)	711, 935
Hpy99I	CGWCG	6 cut(s)	144, 215, 245, 344, 476, 536
HpyAV	CCTTC	4 cut(s)	156, 358, 437, 577
HpyCH4III	ACNGT	2 cut(s)	854, 1052
HpyCH4V	TGCA	5 cut(s)	628, 782, 796, 983, 1004
HpyF10VI	GCNNNNNNNGC	1 cut(s)	802
HpyF3I	CTNAG	7 cut(s)	236, 513, 636, 705, 774, 896, 912
Hsp92II	CATG	2 cut(s)	800, 1021
HspAI	GCGC	4 cut(s)	201, 266, 602, 1027
Kzo9I	GATC	3 cut(s)	223, 315, 538
LmnI	GCTCC	2 cut(s)	208, 741
Lsp1109I	GCAGC	5 cut(s)	71, 640, 766, 988, 995
LweI	GCATC	2 cut(s)	846, 970
MaeIII	GTNAC	5 cut(s)	65, 86, 128, 848, 1046
MalI	GATC	3 cut(s)	225, 317, 540
MboI	GATC	3 cut(s)	223, 315, 538
MboII	GAAGA	9 cut(s)	184, 193, 260, 263, 278, 536, 548, 592, 704
MflI	RGATCY	2 cut(s)	315, 538
MhlI	GDGCHC	3 cut(s)	496, 701, 918
MluCI	AATT	5 cut(s)	44, 105, 184, 623, 830
MlyI	GAGTC	2 cut(s)	374, 697
MmeI	TCCRAC	1 cut(s)	363
MroXI	GAANNNNTTC	1 cut(s)	185
MspA1I	CMGCKG	1 cut(s)	62
MspR9I	CCNGG	1 cut(s)	426
Mva1269I	GAATGC	1 cut(s)	1062
MvaI	CCWGG	1 cut(s)	426
MwoI	GCNNNNNNNGC	1 cut(s)	802
NdeII	GATC	3 cut(s)	223, 315, 538
NlaIII	CATG	2 cut(s)	800, 1021
NlaIV	GGNNCC	2 cut(s)	317, 337
NmeAIII	GCCGAG	1 cut(s)	751
NmuCI	GTSAC	4 cut(s)	65, 86, 128, 1046
PcsI	WCGNNNNNNNCGW	2 cut(s)	163, 219
PctI	GAATGC	1 cut(s)	1062
PdmI	GAANNNNTTC	1 cut(s)	185
PfeI	GAWTC	3 cut(s)	73, 94, 115
PflFI	GACNNNGTC	1 cut(s)	144
PinAI	ACCGGT	1 cut(s)	83
PleI	GAGTC	2 cut(s)	374, 697
PpsI	GAGTC	2 cut(s)	374, 697
Psp124BI	GAGCTC	2 cut(s)	701, 918
Psp6I	CCWGG	1 cut(s)	424
PspEI	GGTNACC	1 cut(s)	86
PspGI	CCWGG	1 cut(s)	424
PspN4I	GGNNCC	2 cut(s)	317, 337
PspPI	GGNCC	1 cut(s)	504
PsuI	RGATCY	2 cut(s)	315, 538
PsyI	GACNNNGTC	1 cut(s)	144
PvuII	CAGCTG	1 cut(s)	62
RsaI	GTAC	1 cut(s)	650
RsaNI	GTAC	1 cut(s)	649
SacI	GAGCTC	2 cut(s)	701, 918
Sau3AI	GATC	3 cut(s)	223, 315, 538
Sau96I	GGNCC	1 cut(s)	504
SchI	GAGTC	2 cut(s)	374, 697
ScrFI	CCNGG	1 cut(s)	426
SduI	GDGCHC	3 cut(s)	496, 701, 918
SfaNI	GCATC	2 cut(s)	846, 970
SinI	GGWCC	1 cut(s)	504
SmlI	CTYRAG	2 cut(s)	844, 1022
SmoI	CTYRAG	2 cut(s)	844, 1022
Sse9I	AATT	5 cut(s)	44, 105, 184, 623, 830
SsiI	CCGC	9 cut(s)	56, 122, 414, 447, 465, 468, 805, 1033, 1060
SstI	GAGCTC	2 cut(s)	701, 918
StyD4I	CCNGG	1 cut(s)	424
TaaI	ACNGT	2 cut(s)	854, 1052
TaqI	TCGA	5 cut(s)	139, 615, 701, 744, 765
TasI	AATT	5 cut(s)	44, 105, 184, 623, 830
TatI	WGTACW	1 cut(s)	648
TauI	GCSGC	6 cut(s)	59, 125, 417, 468, 471, 808
TfiI	GAWTC	3 cut(s)	73, 94, 115
TscAI	CASTG	3 cut(s)	34, 713, 859
TseFI	GTSAC	4 cut(s)	65, 86, 128, 1046
TseI	GCWGC	5 cut(s)	59, 628, 779, 983, 1001
Tsp45I	GTSAC	4 cut(s)	65, 86, 128, 1046
TspDTI	ATGAA	4 cut(s)	624, 636, 813, 1006
TspRI	CASTG	3 cut(s)	34, 713, 859
Tth111I	GACNNNGTC	1 cut(s)	144
VpaK11BI	GGWCC	1 cut(s)	504
XapI	RAATTY	3 cut(s)	44, 184, 830
XmnI	GAANNNNTTC	1 cut(s)	185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.