Rmu_sc0004976.1_g000035
MYB Family

Myb family transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004976.1
OG0012464
Physical Location & Seq
Reverse (-)
123186 .. 124848
1663 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 801 bp
atgtttggttttggggaagaacaaggatttcaaggacccctgaccccgaatatggatcgcggtgttgttgagggtgaagaagaggaggaggaagaagaacaggaagagaactcaactgatcacagtagttctcagattgaaccagtagctcttccttacgttccttctagttataagctcaaatctcggcttaggtggagtgctgaccttcatgccagttttgttgatgctgtctatcagcttggtggccctcataaggcaactccaaagtcgattatgcaaataatggatgttaagggactatcgcttttccacgtgaagagccacctccaggttaagaagcatttgcaattgcgtaaagaagcccaaagcagatatttaagtcgtgcagtagagaatgcatgtgaaaagcttgcccatcaatttcttggaggctgtgcagcagattatgcaggtgtgtttggacaaaatgctgctggtttagaaactatggggtcaataccacatcagaaggatctagatctataccctgcatatcatatgactcagattatgcagcctagttttgacaaccaacttggtagttttggaaaccaacttggtagctttcagcctgagagtgaagcctattttgcaaccggagaccacccgatctcagctgggcattcaggaaattcatccgtgcaagatttcccaactttcgatacagatgggaataacgaggttgagattttggatgatgatcctgcagaaacttatttgattctggatactgctgaaaatggaagtgacgagtcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

266

Amino Acids

29.28

Weight (kDa)

4.55

Isoelectric Point (pI)

48.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_CC_LHEQLE PF14379 108 - 136 7.9e-06 MYB-CC type transfactor, LHEQLE motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012464)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G06020 AT3G12730 AT3G12730
fragaria_vesca FvH4_6g40170 FvH4_6g40170 FvH4_6g40170
malus_domestica MD09G1134600.v1.1 MD17G1123500.v1.1
prunus_persica Prupe.3G192100_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0155181
rosa_laevigata RLG00000020824
rosa_multiflora Rmu_sc0004976.1_g000035
rosa_roxburghii Rroxscaffold_2G00093890
rosa_rugosa Rorug02G0445800
rosa_samantha Rh2AG512000 Rh2BG522800 Rh2CG497000 Rh2DG532500
rosa_wichuraiana Rw2G042070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 174
AarI CACCTGC 1 cut(s) 443
Acc36I ACCTGC 1 cut(s) 443
AccII CGCG 1 cut(s) 60
AciI CCGC 1 cut(s) 60
AclWI GGATC 3 cut(s) 63, 522, 737
AcsI RAATTY 1 cut(s) 673
AcvI CACGTG 1 cut(s) 316
AfiI CCNNNNNNNGG 3 cut(s) 52, 256, 331
AgsI TTSAA 2 cut(s) 32, 140
AjnI CCWGG 1 cut(s) 330
AluBI AGCT 6 cut(s) 149, 178, 241, 412, 606, 659
AluI AGCT 6 cut(s) 149, 178, 241, 412, 606, 659
Alw26I GTCTC 1 cut(s) 636
AlwI GGATC 3 cut(s) 63, 522, 737
AoxI GGCC 1 cut(s) 247
ApeKI GCWGC 3 cut(s) 440, 473, 556
ApoI RAATTY 1 cut(s) 673
AspS9I GGNCC 2 cut(s) 35, 248
AsuHPI GGTGA 1 cut(s) 86
AvaII GGWCC 1 cut(s) 35
BbrPI CACGTG 1 cut(s) 316
BbvI GCAGC 3 cut(s) 452, 460, 568
BccI CCATC 2 cut(s) 426, 704
BciT130I CCWGG 1 cut(s) 332
BciVI GTATCC 1 cut(s) 763
BclI TGATCA 1 cut(s) 118
BcoDI GTCTC 1 cut(s) 636
BfaI CTAG 3 cut(s) 168, 518, 561
BfmI CTRYAG 1 cut(s) 747
BfuAI ACCTGC 1 cut(s) 443
BfuI GTATCC 1 cut(s) 763
BglII AGATCT 1 cut(s) 520
BisI GCNGC 3 cut(s) 441, 474, 557
BlsI GCNGC 3 cut(s) 442, 475, 558
Bme1390I CCNGG 1 cut(s) 332
Bme18I GGWCC 1 cut(s) 35
BmgT120I GGNCC 2 cut(s) 35, 248
BmiI GGNNCC 1 cut(s) 37
BmrFI CCNGG 1 cut(s) 332
BmsI GCATC 1 cut(s) 217
BpmI CTGGAG 1 cut(s) 314
Bpu10I CCTNAGC 1 cut(s) 191
BsaAI YACGTR 1 cut(s) 316
BsaBI GATNNNNATC 2 cut(s) 519, 741
BsaI GGTCTC 1 cut(s) 636
BsaWI WCCGGW 1 cut(s) 638
Bsc4I CCNNNNNNNGG 3 cut(s) 52, 256, 331
Bse1I ACTGG 2 cut(s) 143, 216
Bse8I GATNNNNATC 2 cut(s) 519, 741
BseBI CCWGG 1 cut(s) 332
BseGI GGATG 3 cut(s) 295, 677, 742
BseJI GATNNNNATC 2 cut(s) 519, 741
BseLI CCNNNNNNNGG 3 cut(s) 52, 256, 331
BseMII CTCAG 4 cut(s) 146, 560, 606, 669
BseNI ACTGG 2 cut(s) 143, 216
BseRI GAGGAG 2 cut(s) 98, 101
BseXI GCAGC 3 cut(s) 452, 460, 568
BseYI CCCAGC 1 cut(s) 659
BsgI GTGCAG 2 cut(s) 408, 459
Bsh1236I CGCG 1 cut(s) 60
BshFI GGCC 1 cut(s) 249
BsiSI CCGG 1 cut(s) 639
BslFI GGGAC 1 cut(s) 312
BslI CCNNNNNNNGG 3 cut(s) 52, 256, 331
BsmAI GTCTC 1 cut(s) 636
BsmFI GGGAC 1 cut(s) 312
BsmI GAATGC 2 cut(s) 403, 664
BsnI GGCC 1 cut(s) 249
Bso31I GGTCTC 1 cut(s) 636
Bsp143I GATC 6 cut(s) 55, 118, 514, 520, 651, 742
BspACI CCGC 1 cut(s) 60
BspANI GGCC 1 cut(s) 249
BspCNI CTCAG 4 cut(s) 145, 559, 607, 668
BspFNI CGCG 1 cut(s) 60
BspLI GGNNCC 1 cut(s) 37
BspMAI CTGCAG 1 cut(s) 751
BspMI ACCTGC 1 cut(s) 443
BspPI GGATC 3 cut(s) 63, 522, 737
BspQI GCTCTTC 2 cut(s) 156, 314
BspTNI GGTCTC 1 cut(s) 636
BsrI ACTGG 2 cut(s) 143, 216
BssMI GATC 6 cut(s) 55, 118, 514, 520, 651, 742
Bst2UI CCWGG 1 cut(s) 332
Bst4CI ACNGT 1 cut(s) 125
Bst6I CTCTTC 4 cut(s) 75, 99, 156, 314
BstAPI GCANNNNNTGC 1 cut(s) 449
BstBAI YACGTR 1 cut(s) 316
BstC8I GCNNGC 1 cut(s) 414
BstDEI CTNAG 5 cut(s) 132, 191, 546, 615, 655
BstF5I GGATG 3 cut(s) 295, 677, 742
BstFNI CGCG 1 cut(s) 60
BstKTI GATC 6 cut(s) 58, 121, 517, 523, 654, 745
BstMAI GTCTC 1 cut(s) 636
BstMBI GATC 6 cut(s) 55, 118, 514, 520, 651, 742
BstMWI GCNNNNNNNGC 2 cut(s) 449, 632
BstNI CCWGG 1 cut(s) 332
BstNSI RCATGY 1 cut(s) 405
BstSCI CCNGG 1 cut(s) 330
BstSFI CTRYAG 1 cut(s) 747
BstUI CGCG 1 cut(s) 60
BstV1I GCAGC 3 cut(s) 452, 460, 568
BstX2I RGATCY 2 cut(s) 514, 520
BstYI RGATCY 2 cut(s) 514, 520
BsuI GTATCC 1 cut(s) 763
BsuRI GGCC 1 cut(s) 249
BtsCI GGATG 3 cut(s) 295, 677, 742
BveI ACCTGC 1 cut(s) 443
Cac8I GCNNGC 1 cut(s) 414
Cfr13I GGNCC 2 cut(s) 35, 248
CviAII CATG 2 cut(s) 212, 402
DdeI CTNAG 5 cut(s) 132, 191, 546, 615, 655
DpnI GATC 6 cut(s) 57, 120, 516, 522, 653, 744
DpnII GATC 6 cut(s) 55, 118, 514, 520, 651, 742
Eam1104I CTCTTC 4 cut(s) 75, 99, 156, 314
EarI CTCTTC 4 cut(s) 75, 99, 156, 314
Eco31I GGTCTC 1 cut(s) 636
Eco47I GGWCC 1 cut(s) 35
Eco72I CACGTG 1 cut(s) 316
EcoO109I RGGNCCY 1 cut(s) 35
EcoRII CCWGG 1 cut(s) 330
EcoT22I ATGCAT 1 cut(s) 403
FaeI CATG 2 cut(s) 215, 405
FaqI GGGAC 1 cut(s) 312
FatI CATG 2 cut(s) 211, 401
FauNDI CATATG 1 cut(s) 540
FbaI TGATCA 1 cut(s) 118
Fnu4HI GCNGC 3 cut(s) 441, 474, 557
FokI GGATG 3 cut(s) 302, 664, 749
Fsp4HI GCNGC 3 cut(s) 441, 474, 557
FspBI CTAG 3 cut(s) 168, 518, 561
GluI GCNGC 3 cut(s) 441, 474, 557
GsaI CCCAGC 1 cut(s) 663
GsuI CTGGAG 1 cut(s) 314
HaeIII GGCC 1 cut(s) 249
HapII CCGG 1 cut(s) 639
Hin1II CATG 2 cut(s) 215, 405
HindIII AAGCTT 1 cut(s) 410
HinfI GANTC 3 cut(s) 544, 763, 794
HpaII CCGG 1 cut(s) 639
HphI GGTGA 1 cut(s) 86
Hpy188I TCNGA 3 cut(s) 135, 510, 549
Hpy188III TCNNGA 4 cut(s) 518, 669, 767, 798
HpyAV CCTTC 3 cut(s) 174, 218, 505
HpyCH4III ACNGT 1 cut(s) 125
HpyCH4IV ACGT 2 cut(s) 159, 315
HpyF10VI GCNNNNNNNGC 2 cut(s) 449, 632
HpyF3I CTNAG 5 cut(s) 132, 191, 546, 615, 655
HpySE526I ACGT 2 cut(s) 159, 315
Hsp92II CATG 2 cut(s) 215, 405
Ksp22I TGATCA 1 cut(s) 118
Kzo9I GATC 6 cut(s) 55, 118, 514, 520, 651, 742
LguI GCTCTTC 2 cut(s) 156, 314
Lsp1109I GCAGC 3 cut(s) 452, 460, 568
LweI GCATC 1 cut(s) 217
MaeI CTAG 3 cut(s) 168, 518, 561
MaeII ACGT 2 cut(s) 159, 315
MaeIII GTNAC 1 cut(s) 788
MalI GATC 6 cut(s) 57, 120, 516, 522, 653, 744
MboI GATC 6 cut(s) 55, 118, 514, 520, 651, 742
MboII GAAGA 8 cut(s) 29, 89, 92, 104, 107, 116, 143, 331
MfeI CAATTG 1 cut(s) 350
MflI RGATCY 2 cut(s) 514, 520
MluCI AATT 3 cut(s) 350, 422, 673
MlyI GAGTC 1 cut(s) 538
MnlI CCTC 8 cut(s) 64, 76, 79, 82, 261, 338, 425, 715
Mph1103I ATGCAT 1 cut(s) 403
MseI TTAA 3 cut(s) 294, 336, 380
MspA1I CMGCKG 1 cut(s) 659
MspI CCGG 1 cut(s) 639
MspR9I CCNGG 1 cut(s) 332
MunI CAATTG 1 cut(s) 350
Mva1269I GAATGC 2 cut(s) 403, 664
MvaI CCWGG 1 cut(s) 332
MvnI CGCG 1 cut(s) 60
MwoI GCNNNNNNNGC 2 cut(s) 449, 632
NdeI CATATG 1 cut(s) 540
NdeII GATC 6 cut(s) 55, 118, 514, 520, 651, 742
NlaIII CATG 2 cut(s) 215, 405
NlaIV GGNNCC 1 cut(s) 37
NmeAIII GCCGAG 1 cut(s) 166
NmuCI GTSAC 1 cut(s) 788
NsiI ATGCAT 1 cut(s) 403
NspI RCATGY 1 cut(s) 405
PaqCI CACCTGC 1 cut(s) 443
PciSI GCTCTTC 2 cut(s) 156, 314
PctI GAATGC 2 cut(s) 403, 664
PfeI GAWTC 1 cut(s) 763
PkrI GCNGC 3 cut(s) 442, 475, 558
PleI GAGTC 1 cut(s) 538
PmaCI CACGTG 1 cut(s) 316
PmlI CACGTG 1 cut(s) 316
PpsI GAGTC 1 cut(s) 538
Ppu21I YACGTR 1 cut(s) 316
PpuMI RGGWCCY 1 cut(s) 35
PsiI TTATAA 1 cut(s) 174
Psp5II RGGWCCY 1 cut(s) 35
Psp6I CCWGG 1 cut(s) 330
PspCI CACGTG 1 cut(s) 316
PspFI CCCAGC 1 cut(s) 659
PspGI CCWGG 1 cut(s) 330
PspN4I GGNNCC 1 cut(s) 37
PspPI GGNCC 2 cut(s) 35, 248
PspPPI RGGWCCY 1 cut(s) 35
PstI CTGCAG 1 cut(s) 751
PsuI RGATCY 2 cut(s) 514, 520
PvuII CAGCTG 1 cut(s) 659
SapI GCTCTTC 2 cut(s) 156, 314
SaqAI TTAA 3 cut(s) 294, 336, 380
SatI GCNGC 3 cut(s) 441, 474, 557
Sau3AI GATC 6 cut(s) 55, 118, 514, 520, 651, 742
Sau96I GGNCC 2 cut(s) 35, 248
SchI GAGTC 1 cut(s) 538
ScrFI CCNGG 1 cut(s) 332
SfaNI GCATC 1 cut(s) 217
SfcI CTRYAG 1 cut(s) 747
SinI GGWCC 1 cut(s) 35
Sse9I AATT 3 cut(s) 350, 422, 673
SsiI CCGC 1 cut(s) 60
SspMI CTAG 3 cut(s) 168, 518, 561
StyD4I CCNGG 1 cut(s) 330
TaaI ACNGT 1 cut(s) 125
TaiI ACGT 2 cut(s) 162, 318
TaqI TCGA 2 cut(s) 272, 702
TasI AATT 3 cut(s) 350, 422, 673
TfiI GAWTC 1 cut(s) 763
Tru1I TTAA 3 cut(s) 294, 336, 380
Tru9I TTAA 3 cut(s) 294, 336, 380
TseFI GTSAC 1 cut(s) 788
TseI GCWGC 3 cut(s) 440, 473, 556
Tsp45I GTSAC 1 cut(s) 788
TspDTI ATGAA 2 cut(s) 200, 666
TspGWI ACGGA 1 cut(s) 670
VpaK11BI GGWCC 1 cut(s) 35
XapI RAATTY 1 cut(s) 673
XbaI TCTAGA 1 cut(s) 517
XceI RCATGY 1 cut(s) 405
XcmI CCANNNNNNNNNTGG 1 cut(s) 425
XspI CTAG 3 cut(s) 168, 518, 561
Zsp2I ATGCAT 1 cut(s) 403
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.