Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005010.1

Orthogroup ID

OG0014869

Physical Location & Seq

Genomic Coordinates Forward (+)

23523 .. 28066

Gene Structure 4544 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

atgaagcctatgaatgctgggacaagcagagctaagcacctgaaggttttgaggatggcagtgatttacataatgatgattgtgttgaatctgtatgagtacgcgaagaaaaacttggggcctccgagatcgattgtgtggactatggaggttgctatgatcaatattgttactccaatctaccggagattcgaaggagtgcctgatgatttccttggtttactccacacgaaggcaagtgtcgctaaatatgtggaagaccttgatggctctaaactcactatggaatttgttcgggtgtgggggtccaacaatgaggggttacgctttgagctaaccagtgaagaacactaccatatagcgctattgcttagttgttggcggaatcgaaacctactcaacatacgtctattgacgatttgggacctcttggcggagttgaagttaactcattttcctgatcccatgcttgacaaccgcaagagtcatgattccttccaaaaagcaatggacaaggctcagcttcaaaactaccttagcggcatttggatgaggttgaatgaactgtttttggcgacctcaaggccatccccaactaaggttcgacttcaaggtgaggttgaggtccttagtcacgatttggcggaggagaagaagcgacacagtgagacagatcgtcggctggcaaaggcagaggtagacttgatcgatgttaagggaaaactagatgccgccgttgcccgggacttggagcacaacaccaaggtgtctgagccgaatcaggaggtgctcgcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005811 GO:0006996 GO:0007275 GO:0008150 GO:0009555 GO:0009987 GO:0012505 GO:0016043 GO:0032501 GO:0032502 GO:0034389 GO:0040007 GO:0040008 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044424 GO:0044444 GO:0044464 GO:0045927 GO:0048229 GO:0048518 GO:0048583 GO:0048584 GO:0048589 GO:0048856 GO:0050789 GO:0065007 GO:0071840 GO:0080134 GO:0080186 GO:1902584 GO:2000070

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

REF

Protein Analysis

265

Amino Acids

30.54

Weight (kDa)

8.51

Isoelectric Point (pI)

36.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
REF	PF05755	9 - 88	3e-16	Rubber elongation factor protein (REF)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014869)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000013606 RLG00000013640 RLG00000022557
rosa_multiflora	Rmu_sc0000361.1_g000046 Rmu_sc0001423.1_g000003 Rmu_sc0001561.1_g000015 Rmu_sc0001803.1_g000027 Rmu_sc0005010.1_g000005 Rmu_sc0006111.1_g000008 Rmu_sc0008266.1_g000002 Rmu_sc0018980.1_g000001
rosa_roxburghii	Rroxscaffold_2G00131880
rosa_rugosa	Rorug05G0283400
rosa_samantha	Rh2BG242900 Rh2BG415500 Rh6DG220600 Rh7CG085000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	699
AccII	CGCG	1 cut(s)	104
AciI	CCGC	6 cut(s)	382, 434, 478, 540, 644, 732
AclWI	GGATC	1 cut(s)	455
AcsI	RAATTY	1 cut(s)	287
AcuI	CTGAAG	1 cut(s)	62
AfaI	GTAC	1 cut(s)	101
AfeI	AGCGCT	1 cut(s)	363
AfiI	CCNNNNNNNGG	5 cut(s)	232, 433, 598, 741, 748
AgsI	TTSAA	5 cut(s)	88, 442, 527, 559, 611
AhdI	GACNNNNNGTC	1 cut(s)	675
AjuI	GAANNNNNNNTTGG	2 cut(s)	98, 130
AleI	CACNNNNGTG	1 cut(s)	764
AluBI	AGCT	3 cut(s)	32, 334, 523
AluI	AGCT	3 cut(s)	32, 334, 523
Alw21I	GWGCWC	2 cut(s)	756, 792
Alw26I	GTCTC	1 cut(s)	662
AlwI	GGATC	1 cut(s)	455
Ama87I	CYCGRG	1 cut(s)	741
Aor51HI	AGCGCT	1 cut(s)	363
AoxI	GGCC	2 cut(s)	119, 584
ApoI	RAATTY	1 cut(s)	287
Asp700I	GAANNNNTTC	1 cut(s)	291
AspLEI	GCGC	1 cut(s)	364
AspS9I	GGNCC	4 cut(s)	119, 306, 424, 625
AsuC2I	CCSGG	2 cut(s)	742, 743
AsuHPI	GGTGA	1 cut(s)	626
AsuII	TTCGAA	1 cut(s)	192
AvaI	CYCGRG	1 cut(s)	741
AvaII	GGWCC	3 cut(s)	306, 424, 625
BbsI	GAAGAC	1 cut(s)	264
Bbv12I	GWGCWC	2 cut(s)	756, 792
BccI	CCATC	3 cut(s)	49, 260, 595
BceAI	ACGGC	1 cut(s)	719
BclI	TGATCA	1 cut(s)	159
BcnI	CCSGG	2 cut(s)	742, 743
BcoDI	GTCTC	1 cut(s)	662
BfaI	CTAG	1 cut(s)	725
BfoI	RGCGCY	1 cut(s)	365
BisI	GCNGC	2 cut(s)	541, 732
BlpI	GCTNAGC	2 cut(s)	33, 519
BlsI	GCNGC	2 cut(s)	542, 733
Bme1390I	CCNGG	2 cut(s)	742, 743
Bme18I	GGWCC	3 cut(s)	306, 424, 625
BmeRI	GACNNNNNGTC	1 cut(s)	675
BmeT110I	CYCGRG	1 cut(s)	741
BmgT120I	GGNCC	4 cut(s)	119, 306, 424, 625
BmiI	GGNNCC	3 cut(s)	120, 307, 425
BmrFI	CCNGG	2 cut(s)	742, 743
BmsI	GCATC	1 cut(s)	718
BpiI	GAAGAC	1 cut(s)	264
Bpu10I	CCTNAGC	1 cut(s)	536
Bpu1102I	GCTNAGC	2 cut(s)	33, 519
Bpu14I	TTCGAA	1 cut(s)	192
BpuEI	CTTGAG	1 cut(s)	565
BpuMI	CCSGG	2 cut(s)	742, 743
Bsa29I	ATCGAT	2 cut(s)	131, 708
BsaJI	CCNNGG	3 cut(s)	214, 741, 762
BsaWI	WCCGGW	1 cut(s)	183
BsaXI	ACNNNNNCTCC	2 cut(s)	428, 458
Bsc4I	CCNNNNNNNGG	5 cut(s)	232, 433, 598, 741, 748
Bse1I	ACTGG	1 cut(s)	339
Bse3DI	GCAATG	1 cut(s)	513
BseCI	ATCGAT	2 cut(s)	131, 708
BseDI	CCNNGG	3 cut(s)	214, 741, 762
BseGI	GGATG	3 cut(s)	60, 555, 587
BseLI	CCNNNNNNNGG	5 cut(s)	232, 433, 598, 741, 748
BseMI	GCAATG	1 cut(s)	513
BseMII	CTCAG	2 cut(s)	533, 762
BseNI	ACTGG	1 cut(s)	339
BseRI	GAGGAG	1 cut(s)	662
BseYI	CCCAGC	1 cut(s)	17
Bsh1236I	CGCG	1 cut(s)	104
BshFI	GGCC	2 cut(s)	121, 586
BshVI	ATCGAT	2 cut(s)	131, 708
BsiHKAI	GWGCWC	2 cut(s)	756, 792
BsiHKCI	CYCGRG	1 cut(s)	741
BsiSI	CCGG	2 cut(s)	184, 742
BslFI	GGGAC	3 cut(s)	34, 437, 758
BslI	CCNNNNNNNGG	5 cut(s)	232, 433, 598, 741, 748
BsmAI	GTCTC	1 cut(s)	662
BsmFI	GGGAC	3 cut(s)	34, 437, 758
BsmI	GAATGC	1 cut(s)	19
BsnI	GGCC	2 cut(s)	121, 586
BsoBI	CYCGRG	1 cut(s)	741
Bsp119I	TTCGAA	1 cut(s)	192
Bsp1286I	GDGCHC	2 cut(s)	756, 792
Bsp143I	GATC	5 cut(s)	128, 159, 460, 673, 705
Bsp1720I	GCTNAGC	2 cut(s)	33, 519
BspACI	CCGC	6 cut(s)	382, 434, 478, 540, 644, 732
BspANI	GGCC	2 cut(s)	121, 586
BspCNI	CTCAG	2 cut(s)	532, 763
BspDI	ATCGAT	2 cut(s)	131, 708
BspFNI	CGCG	1 cut(s)	104
BspHI	TCATGA	1 cut(s)	487
BspLI	GGNNCC	3 cut(s)	120, 307, 425
BspPI	GGATC	1 cut(s)	455
BspT104I	TTCGAA	1 cut(s)	192
BsrDI	GCAATG	1 cut(s)	513
BsrI	ACTGG	1 cut(s)	339
BssECI	CCNNGG	3 cut(s)	214, 741, 762
BssMI	GATC	5 cut(s)	128, 159, 460, 673, 705
BssT1I	CCWWGG	2 cut(s)	214, 762
Bst4CI	ACNGT	2 cut(s)	567, 665
BstBI	TTCGAA	1 cut(s)	192
BstC8I	GCNNGC	2 cut(s)	684, 792
BstDEI	CTNAG	7 cut(s)	33, 371, 519, 536, 597, 629, 771
BstF5I	GGATG	3 cut(s)	60, 555, 587
BstFNI	CGCG	1 cut(s)	104
BstH2I	RGCGCY	1 cut(s)	365
BstHHI	GCGC	1 cut(s)	364
BstKTI	GATC	5 cut(s)	131, 162, 463, 676, 708
BstMAI	GTCTC	1 cut(s)	662
BstMBI	GATC	5 cut(s)	128, 159, 460, 673, 705
BstMWI	GCNNNNNNNGC	2 cut(s)	242, 737
BstSCI	CCNGG	2 cut(s)	740, 741
BstUI	CGCG	1 cut(s)	104
BstV2I	GAAGAC	1 cut(s)	264
Bsu15I	ATCGAT	2 cut(s)	131, 708
BsuRI	GGCC	2 cut(s)	121, 586
BsuTUI	ATCGAT	2 cut(s)	131, 708
BtsCI	GGATG	3 cut(s)	60, 555, 587
BtsI	GCAGTG	1 cut(s)	66
BtsIMutI	CAGTG	3 cut(s)	66, 346, 670
Cac8I	GCNNGC	2 cut(s)	684, 792
CciI	TCATGA	1 cut(s)	487
CfoI	GCGC	1 cut(s)	364
Cfr13I	GGNCC	4 cut(s)	119, 306, 424, 625
Cfr9I	CCCGGG	1 cut(s)	741
ClaI	ATCGAT	2 cut(s)	131, 708
Csp6I	GTAC	1 cut(s)	100
CviAII	CATG	2 cut(s)	466, 488
CviQI	GTAC	1 cut(s)	100
DdeI	CTNAG	7 cut(s)	33, 371, 519, 536, 597, 629, 771
DpnI	GATC	5 cut(s)	130, 161, 462, 675, 707
DpnII	GATC	5 cut(s)	128, 159, 460, 673, 705
DriI	GACNNNNNGTC	1 cut(s)	675
Eam1105I	GACNNNNNGTC	1 cut(s)	675
EciI	GGCGGA	3 cut(s)	397, 449, 659
Eco130I	CCWWGG	2 cut(s)	214, 762
Eco47I	GGWCC	3 cut(s)	306, 424, 625
Eco47III	AGCGCT	1 cut(s)	363
Eco57I	CTGAAG	1 cut(s)	62
Eco88I	CYCGRG	1 cut(s)	741
EcoO109I	RGGNCCY	3 cut(s)	119, 424, 625
EcoT14I	CCWWGG	2 cut(s)	214, 762
ErhI	CCWWGG	2 cut(s)	214, 762
FaeI	CATG	2 cut(s)	469, 491
FalI	AAGNNNNNCTT	2 cut(s)	98, 130
FaqI	GGGAC	3 cut(s)	34, 437, 758
FatI	CATG	2 cut(s)	465, 487
FbaI	TGATCA	1 cut(s)	159
FblI	GTMKAC	1 cut(s)	699
Fnu4HI	GCNGC	2 cut(s)	541, 732
FokI	GGATG	3 cut(s)	67, 562, 574
Fsp4HI	GCNGC	2 cut(s)	541, 732
FspBI	CTAG	1 cut(s)	725
GlaI	GCGC	1 cut(s)	363
GluI	GCNGC	2 cut(s)	541, 732
GsaI	CCCAGC	1 cut(s)	21
HaeII	RGCGCY	1 cut(s)	365
HaeIII	GGCC	2 cut(s)	121, 586
HapII	CCGG	2 cut(s)	184, 742
HhaI	GCGC	1 cut(s)	364
Hin1II	CATG	2 cut(s)	469, 491
Hin6I	GCGC	1 cut(s)	362
HinP1I	GCGC	1 cut(s)	362
HincII	GTYRAC	1 cut(s)	447
HindII	GTYRAC	1 cut(s)	447
HinfI	GANTC	6 cut(s)	88, 189, 385, 484, 491, 778
HpaI	GTTAAC	1 cut(s)	447
HpaII	CCGG	2 cut(s)	184, 742
HphI	GGTGA	1 cut(s)	626
Hpy166II	GTNNAC	4 cut(s)	141, 221, 447, 700
Hpy188I	TCNGA	2 cut(s)	126, 772
Hpy188III	TCNNGA	4 cut(s)	458, 488, 635, 782
Hpy8I	GTNNAC	4 cut(s)	141, 221, 447, 700
Hpy99I	CGWCG	1 cut(s)	681
HpyAV	CCTTC	4 cut(s)	37, 188, 226, 505
HpyCH4III	ACNGT	2 cut(s)	567, 665
HpyCH4IV	ACGT	1 cut(s)	406
HpyF10VI	GCNNNNNNNGC	2 cut(s)	242, 737
HpyF3I	CTNAG	7 cut(s)	33, 371, 519, 536, 597, 629, 771
HpySE526I	ACGT	1 cut(s)	406
Hsp92II	CATG	2 cut(s)	469, 491
HspAI	GCGC	1 cut(s)	362
Ksp22I	TGATCA	1 cut(s)	159
KspAI	GTTAAC	1 cut(s)	447
Kzo9I	GATC	5 cut(s)	128, 159, 460, 673, 705
LmnI	GCTCC	1 cut(s)	751
LpnPI	CCDG	9 cut(s)	3, 53, 197, 216, 352, 471, 668, 755, 767
LweI	GCATC	1 cut(s)	718
MaeI	CTAG	1 cut(s)	725
MaeII	ACGT	1 cut(s)	406
MaeIII	GTNAC	3 cut(s)	169, 321, 632
MalI	GATC	5 cut(s)	130, 161, 462, 675, 707
MboI	GATC	5 cut(s)	128, 159, 460, 673, 705
MboII	GAAGA	4 cut(s)	118, 269, 356, 664
MhlI	GDGCHC	2 cut(s)	756, 792
MluCI	AATT	1 cut(s)	287
MlyI	GAGTC	1 cut(s)	493
MmeI	TCCRAC	1 cut(s)	333
MroXI	GAANNNNTTC	1 cut(s)	291
MseI	TTAA	2 cut(s)	446, 714
MslI	CAYNNNNRTG	3 cut(s)	74, 548, 764
MspI	CCGG	2 cut(s)	184, 742
MspR9I	CCNGG	2 cut(s)	742, 743
Mva1269I	GAATGC	1 cut(s)	19
MvnI	CGCG	1 cut(s)	104
MwoI	GCNNNNNNNGC	2 cut(s)	242, 737
NciI	CCSGG	2 cut(s)	742, 743
NdeII	GATC	5 cut(s)	128, 159, 460, 673, 705
NlaIII	CATG	2 cut(s)	469, 491
NlaIV	GGNNCC	3 cut(s)	120, 307, 425
NmuCI	GTSAC	1 cut(s)	632
NspV	TTCGAA	1 cut(s)	192
OliI	CACNNNNGTG	1 cut(s)	764
PagI	TCATGA	1 cut(s)	487
PctI	GAATGC	1 cut(s)	19
PdmI	GAANNNNTTC	1 cut(s)	291
PfeI	GAWTC	5 cut(s)	88, 189, 385, 491, 778
PkrI	GCNGC	2 cut(s)	542, 733
PleI	GAGTC	1 cut(s)	492
PpsI	GAGTC	1 cut(s)	492
PpuMI	RGGWCCY	2 cut(s)	424, 625
Psp5II	RGGWCCY	2 cut(s)	424, 625
PspFI	CCCAGC	1 cut(s)	17
PspN4I	GGNNCC	3 cut(s)	120, 307, 425
PspPI	GGNCC	4 cut(s)	119, 306, 424, 625
PspPPI	RGGWCCY	2 cut(s)	424, 625
RsaI	GTAC	1 cut(s)	101
RsaNI	GTAC	1 cut(s)	100
RseI	CAYNNNNRTG	3 cut(s)	74, 548, 764
SaqAI	TTAA	2 cut(s)	446, 714
SatI	GCNGC	2 cut(s)	541, 732
Sau3AI	GATC	5 cut(s)	128, 159, 460, 673, 705
Sau96I	GGNCC	4 cut(s)	119, 306, 424, 625
SchI	GAGTC	1 cut(s)	493
ScrFI	CCNGG	2 cut(s)	742, 743
SduI	GDGCHC	2 cut(s)	756, 792
SfaNI	GCATC	1 cut(s)	718
SfuI	TTCGAA	1 cut(s)	192
SinI	GGWCC	3 cut(s)	306, 424, 625
SmaI	CCCGGG	1 cut(s)	743
SmiMI	CAYNNNNRTG	3 cut(s)	74, 548, 764
SmlI	CTYRAG	1 cut(s)	580
SmoI	CTYRAG	1 cut(s)	580
Sse9I	AATT	1 cut(s)	287
SsiI	CCGC	6 cut(s)	382, 434, 478, 540, 644, 732
SspI	AATATT	1 cut(s)	166
SspMI	CTAG	1 cut(s)	725
StyD4I	CCNGG	2 cut(s)	740, 741
StyI	CCWWGG	2 cut(s)	214, 762
TaaI	ACNGT	2 cut(s)	567, 665
TaiI	ACGT	1 cut(s)	409
TaqI	TCGA	5 cut(s)	131, 192, 388, 604, 708
TasI	AATT	1 cut(s)	287
TauI	GCSGC	2 cut(s)	543, 734
TfiI	GAWTC	5 cut(s)	88, 189, 385, 491, 778
Tru1I	TTAA	2 cut(s)	446, 714
Tru9I	TTAA	2 cut(s)	446, 714
TscAI	CASTG	3 cut(s)	66, 346, 670
TseFI	GTSAC	1 cut(s)	632
Tsp45I	GTSAC	1 cut(s)	632
TspDTI	ATGAA	3 cut(s)	17, 26, 576
TspMI	CCCGGG	1 cut(s)	741
TspRI	CASTG	3 cut(s)	66, 346, 670
VpaK11BI	GGWCC	3 cut(s)	306, 424, 625
XapI	RAATTY	1 cut(s)	287
XmaI	CCCGGG	1 cut(s)	741
XmiI	GTMKAC	1 cut(s)	699
XmnI	GAANNNNTTC	1 cut(s)	291
XspI	CTAG	1 cut(s)	725

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.