Rmu_sc0005098.1_g000013

RNA polymerase-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005098.1
OG0003596
Physical Location & Seq
Forward (+)
44478 .. 48585
4108 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 2376 bp
atgatgaagagacaaaacagggaggcagcagaaaaaaaaattcaacagtacgtaggatcttcaatccagtctacaatcaaattatttgaggaggaggatattgatatttctgtgctggtgggaataaggagtttgaacatgaaaattgacattttgagatttcacttgacccagcggcggcgtggtctcaagactaatttggtggacagatttttggcatcggtggaaggtgaactccggcaatatgaggaggaactagagactaccaggtccaatctgtttgaattagcgaggaagaaaaccgatgtgaatagaacttttatgtctgcgctcttgaagacatctatcttggtccctcatctcacggtgaccgtgttctgggcatctgagctgactcaccgagtcttacatcaccaacaaccctatcagtgtgtgaaacgaagaacaagttcggggcggaaaaaccggcactcacatccaacttcaaagaggagacgtgatgattcatattctgatggtggaagtgactctaggggtgaggactctgatgatggtcggggctatgcgagtaggaaaccctctggatctcaagttcctttgaagaagcggctggacccttcagaagtagatgatgaacatggcagccaggaagaaggtgattataatgatagcggttctgaccgtgggggagagagcaatgaatctgatgttggcagtgatctttacaaagatgaagatgacaggcggaagcttgcagaaatgtctgaacttcaaagagagctgattctgtctgaaagagctcagaagaaagatgataagagtctaaaggagaaattcagaccaaagtgggataaagggaaggccacacagtccaggaaagtgactccacctctcccatcttctcgagtgcgctcctcagctagatctgctgacagggcagctgcgaaagatgatgcactgaatgagttacgagcaaaacgtttgaaacagcaggaccctgaggctcaccgtaaattgagagatgcatctagaggaagtgcagggagtaggaatttctcacacaccaacaggaagtctttctctgctgtcggtcggagtagctctagtcaaagtgatagtgaaagtcggtctcatagtgatgatgaaggatcaagtgcagatgatgctattgacagtgatgatgaaaggggcacacagggactagtatttgaagatataaaggaaattaccattcggaggtcaagacttgcaaagtggcttatggaacctttctttgaggaattaatcgtgggttgctttgtacgggttggaattgggaagactaagtctgggcggcccatctacaggctctgctcggtccgtaatgttgactcttcagatcctgaccggcagtacaaactagagaataaaaccacacacaagtatctgaatgtcgtttggggcaatgaaaactctgctgccaggtggcagatggctatggtttcagactctttacctctggaggaggagtatgatcagtgggttagagaggtggagaaaaatggtggccgcttgccaagcaaagaggatgtgttggaaaaaaaggaagccataaaaaaaacaaatacatttgtctactcagctgaaactgtgaagcagatgatacaggagaaaaaatctgcttcgtcaaggccattgaacattgcacttgagaaggatcggttgaggagggaattggaaattgcacaaagcaagcatgatgatgcagaggttgaaaggatcaaggcaagacttcagcagttggacgcacggcgacaatcacaggggaaagatagcaaggctgttaggcttgctgagatgaacagaaagaatagagttgacaatttcaagaatgcctcaggattaaaacctgtgaaaacaggtttaaaagctggagaggctggttatgatccattttcgaggaggtggaccaggtcaagaaattactatgtttcaaagcctggtgaacaaaaagatgatgttgaggaaactgctgttgctgctgaggcattggcagaggtggagactaatggaacagaagggatagtagcagtacgagctggcttggtagccacagcggcagctctggaagctgcagctggtgctgggaagttgatcgatacgatggctcctgttgatcaaggaacatcgtcaaatccattgcacaattttgagctgccgatctcattggccacgcttcagaagtttggtgggccgcaaggagctcaggaaggattcatggcaagaaaacaaaggatagaagcaacagttggttgccgagtcccagaggatgatgggaggaggcatgcattgacgcttacagttagtgattacaagagaagaagagggcttctctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000122 GO:0000428 GO:0000988 GO:0000989 GO:0000993 GO:0001076 GO:0001098 GO:0001099 GO:0001701 GO:0001704 GO:0001706 GO:0001711 GO:0001824 GO:0001832 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0007369 GO:0007492 GO:0008023 GO:0008150 GO:0008152 GO:0008213 GO:0009653 GO:0009790 GO:0009792 GO:0009888 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009909 GO:0009910 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010638 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0016591 GO:0016593 GO:0018022 GO:0018023 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0019827 GO:0019899 GO:0030154 GO:0030880 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032259 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032784 GO:0032786 GO:0032968 GO:0032991 GO:0033043 GO:0033044 GO:0034243 GO:0034968 GO:0035987 GO:0036211 GO:0040007 GO:0043009 GO:0043170 GO:0043175 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0045165 GO:0045309 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0045944 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048581 GO:0048589 GO:0048598 GO:0048646 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050815 GO:0051093 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051173 GO:0051219 GO:0051239 GO:0051241 GO:0051246 GO:0051247 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0051568 GO:0051569 GO:0051571 GO:0055029 GO:0060255 GO:0060795 GO:0061695 GO:0065007 GO:0070013 GO:0070063 GO:0071704 GO:0071840 GO:0080090 GO:0080182 GO:0097159 GO:0098727 GO:0099122 GO:0140110 GO:1901363 GO:1901564 GO:1902275 GO:1902494 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1905269 GO:1990234 GO:1990269 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2001141 GO:2001252
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Plus-3

Protein Analysis

791

Amino Acids

89.19

Weight (kDa)

9.26

Isoelectric Point (pI)

53.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Plus-3 PF03126 405 - 511 5.1e-32 Plus-3 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 663
AasI GACNNNNNNGTC 1 cut(s) 268
AccI GTMKAC 2 cut(s) 71, 1614
AclI AACGTT 1 cut(s) 979
AclWI GGATC 7 cut(s) 64, 592, 1156, 1373, 1704, 1766, 1922
AcoI YGGCCR 2 cut(s) 1546, 2208
AcsI RAATTY 3 cut(s) 39, 833, 1051
AcuI CTGAAG 4 cut(s) 603, 1359, 1757, 2201
AfaI GTAC 4 cut(s) 50, 1302, 1394, 2073
AfiI CCNNNNNNNGG 4 cut(s) 177, 378, 1236, 1344
AhlI ACTAGT 1 cut(s) 1201
AjiI CACGTC 1 cut(s) 497
AjnI CCWGG 6 cut(s) 266, 645, 872, 1460, 1949, 1978
AjuI GAANNNNNNNTTGG 4 cut(s) 693, 725, 2271, 2303
AloI GAACNNNNNNTCC 2 cut(s) 576, 608
Alw21I GWGCWC 2 cut(s) 802, 2245
Alw26I GTCTC 6 cut(s) 4, 191, 254, 487, 1134, 2036
AlwI GGATC 7 cut(s) 64, 592, 1156, 1373, 1704, 1766, 1922
AlwNI CAGNNNCTG 2 cut(s) 1350, 1382
Ama87I CYCGRG 1 cut(s) 903
AoxI GGCC 6 cut(s) 861, 1334, 1546, 1670, 2208, 2231
ApoI RAATTY 3 cut(s) 39, 833, 1051
AseI ATTAAT 1 cut(s) 1283
Asp700I GAANNNNTTC 2 cut(s) 448, 1076
AspLEI GCGC 2 cut(s) 331, 912
AspS9I GGNCC 8 cut(s) 270, 352, 613, 994, 1335, 1357, 1947, 2231
AsuHPI GGTGA 8 cut(s) 242, 379, 389, 404, 548, 668, 998, 1994
AvaI CYCGRG 1 cut(s) 903
AvaII GGWCC 6 cut(s) 270, 352, 613, 994, 1357, 1947
AxyI CCTNAGG 2 cut(s) 999, 1876
BaeGI GKGCMC 1 cut(s) 1193
BaeI ACNNNNGTAYC 2 cut(s) 1406, 1439
BalI TGGCCA 1 cut(s) 2210
BanII GRGCYC 2 cut(s) 802, 2245
BbsI GAAGAC 2 cut(s) 344, 1325
Bbv12I GWGCWC 2 cut(s) 802, 2245
BbvCI CCTCAGC 2 cut(s) 916, 2022
BccI CCATC 7 cut(s) 509, 545, 904, 1346, 1465, 2137, 2306
BceAI ACGGC 1 cut(s) 1805
BciT130I CCWGG 6 cut(s) 268, 647, 874, 1462, 1951, 1980
BclI TGATCA 2 cut(s) 1513, 2155
BcoDI GTCTC 6 cut(s) 4, 191, 254, 487, 1134, 2036
BcuI ACTAGT 1 cut(s) 1201
BfaI CTAG 7 cut(s) 257, 531, 921, 1029, 1104, 1202, 1400
BfmI CTRYAG 2 cut(s) 1342, 2112
BglI GCCNNNNNGGC 1 cut(s) 2096
BglII AGATCT 1 cut(s) 923
Bme1390I CCNGG 6 cut(s) 268, 647, 874, 1462, 1951, 1980
Bme18I GGWCC 6 cut(s) 270, 352, 613, 994, 1357, 1947
BmeT110I CYCGRG 1 cut(s) 903
BmgBI CACGTC 1 cut(s) 497
BmgT120I GGNCC 8 cut(s) 270, 352, 613, 994, 1335, 1357, 1947, 2231
BmiI GGNNCC 5 cut(s) 354, 615, 996, 1266, 2148
BmrFI CCNGG 6 cut(s) 268, 647, 874, 1462, 1951, 1980
BmsI GCATC 7 cut(s) 227, 392, 943, 1012, 1034, 1153, 1732
BpiI GAAGAC 2 cut(s) 344, 1325
BplI GAGNNNNNCTC 1 cut(s) 2355
BpmI CTGGAG 2 cut(s) 1520, 1932
Bpu10I CCTNAGC 3 cut(s) 916, 2022, 2244
BpuEI CTTGAG 3 cut(s) 173, 573, 1709
Bsa29I ATCGAT 1 cut(s) 2136
BsaAI YACGTR 1 cut(s) 52
BsaI GGTCTC 2 cut(s) 191, 1134
BsaJI CCNNGG 1 cut(s) 682
BsaXI ACNNNNNCTCC 4 cut(s) 1493, 1523, 2131, 2161
Bsc4I CCNNNNNNNGG 4 cut(s) 177, 378, 1236, 1344
Bse118I RCCGGY 2 cut(s) 465, 1386
Bse1I ACTGG 1 cut(s) 67
Bse21I CCTNAGG 2 cut(s) 999, 1876
Bse3DI GCAATG 4 cut(s) 703, 1450, 1680, 2177
BseBI CCWGG 6 cut(s) 268, 647, 874, 1462, 1951, 1980
BseCI ATCGAT 1 cut(s) 2136
BseDI CCNNGG 1 cut(s) 682
BseGI GGATG 3 cut(s) 475, 1573, 2314
BseLI CCNNNNNNNGG 4 cut(s) 177, 378, 1236, 1344
BseMI GCAATG 4 cut(s) 703, 1450, 1680, 2177
BseMII CTCAG 9 cut(s) 378, 815, 930, 990, 1632, 1824, 1890, 2013, 2258
BseNI ACTGG 1 cut(s) 67
BseSI GKGCMC 1 cut(s) 1193
BseYI CCCAGC 2 cut(s) 171, 2123
BsgI GTGCAG 2 cut(s) 1059, 1176
Bsh1285I CGRYCG 1 cut(s) 1093
BshFI GGCC 6 cut(s) 863, 1336, 1548, 1672, 2210, 2233
BshVI ATCGAT 1 cut(s) 2136
BsiEI CGRYCG 1 cut(s) 1093
BsiHKAI GWGCWC 2 cut(s) 802, 2245
BsiHKCI CYCGRG 1 cut(s) 903
BsiSI CCGG 3 cut(s) 238, 466, 1387
BslFI GGGAC 3 cut(s) 338, 1212, 2285
BslI CCNNNNNNNGG 4 cut(s) 177, 378, 1236, 1344
BsmAI GTCTC 6 cut(s) 4, 191, 254, 487, 1134, 2036
BsmBI CGTCTC 1 cut(s) 487
BsmFI GGGAC 3 cut(s) 338, 1212, 2285
BsmI GAATGC 1 cut(s) 1876
BsnI GGCC 6 cut(s) 863, 1336, 1548, 1672, 2210, 2233
Bso31I GGTCTC 2 cut(s) 191, 1134
BsoBI CYCGRG 1 cut(s) 903
Bsp1286I GDGCHC 3 cut(s) 802, 1193, 2245
BspANI GGCC 6 cut(s) 863, 1336, 1548, 1672, 2210, 2233
BspCNI CTCAG 9 cut(s) 379, 814, 929, 991, 1631, 1825, 1889, 2014, 2257
BspDI ATCGAT 1 cut(s) 2136
BspLI GGNNCC 5 cut(s) 354, 615, 996, 1266, 2148
BspMAI CTGCAG 1 cut(s) 2116
BspPI GGATC 7 cut(s) 64, 592, 1156, 1373, 1704, 1766, 1922
BspTNI GGTCTC 2 cut(s) 191, 1134
BsrDI GCAATG 4 cut(s) 703, 1450, 1680, 2177
BsrFI RCCGGY 2 cut(s) 465, 1386
BsrI ACTGG 1 cut(s) 67
BssAI RCCGGY 2 cut(s) 465, 1386
BssECI CCNNGG 1 cut(s) 682
Bst2UI CCWGG 6 cut(s) 268, 647, 874, 1462, 1951, 1980
Bst6I CTCTTC 3 cut(s) 2, 1378, 2356
BstAPI GCANNNNNTGC 2 cut(s) 1163, 2120
BstBAI YACGTR 1 cut(s) 52
BstC8I GCNNGC 6 cut(s) 753, 1553, 1733, 1830, 2080, 2325
BstDSI CCRYGG 1 cut(s) 682
BstEII GGTNACC 1 cut(s) 367
BstF5I GGATG 3 cut(s) 475, 1573, 2314
BstHHI GCGC 2 cut(s) 331, 912
BstMAI GTCTC 6 cut(s) 4, 191, 254, 487, 1134, 2036
BstMCI CGRYCG 1 cut(s) 1093
BstNI CCWGG 6 cut(s) 268, 647, 874, 1462, 1951, 1980
BstNSI RCATGY 1 cut(s) 2327
BstPI GGTNACC 1 cut(s) 367
BstSCI CCNGG 6 cut(s) 266, 645, 872, 1460, 1949, 1978
BstSFI CTRYAG 2 cut(s) 1342, 2112
BstSLI GKGCMC 1 cut(s) 1193
BstSNI TACGTA 1 cut(s) 52
BstV2I GAAGAC 2 cut(s) 344, 1325
BstX2I RGATCY 4 cut(s) 56, 584, 923, 1378
BstYI RGATCY 4 cut(s) 56, 584, 923, 1378
Bsu15I ATCGAT 1 cut(s) 2136
Bsu36I CCTNAGG 2 cut(s) 999, 1876
BsuRI GGCC 6 cut(s) 863, 1336, 1548, 1672, 2210, 2233
BsuTUI ATCGAT 1 cut(s) 2136
BtgI CCRYGG 1 cut(s) 682
BtrI CACGTC 1 cut(s) 497
BtsCI GGATG 3 cut(s) 475, 1573, 2314
BtsI GCAGTG 1 cut(s) 721
BtsIMutI CAGTG 5 cut(s) 434, 721, 956, 1180, 1523
Cac8I GCNNGC 6 cut(s) 753, 1553, 1733, 1830, 2080, 2325
CaiI CAGNNNCTG 2 cut(s) 1350, 1382
CfoI GCGC 2 cut(s) 331, 912
Cfr10I RCCGGY 2 cut(s) 465, 1386
Cfr13I GGNCC 8 cut(s) 270, 352, 613, 994, 1335, 1357, 1947, 2231
ClaI ATCGAT 1 cut(s) 2136
CpoI CGGWCCG 1 cut(s) 1357
CseI GACGC 2 cut(s) 1793, 2341
CsiI ACCWGGT 2 cut(s) 266, 1949
Csp6I GTAC 4 cut(s) 49, 1301, 1393, 2072
CspI CGGWCCG 1 cut(s) 1357
CviAII CATG 5 cut(s) 139, 638, 1736, 2257, 2324
CviQI GTAC 4 cut(s) 49, 1301, 1393, 2072
DraI TTTAAA 1 cut(s) 1905
DrdI GACNNNNNNGTC 1 cut(s) 268
DseDI GACNNNNNNGTC 1 cut(s) 268
EaeI YGGCCR 2 cut(s) 1546, 2208
Eam1104I CTCTTC 3 cut(s) 2, 1378, 2356
EarI CTCTTC 3 cut(s) 2, 1378, 2356
EciI GGCGGA 2 cut(s) 472, 760
Ecl136II GAGCTC 2 cut(s) 800, 2243
Eco105I TACGTA 1 cut(s) 52
Eco24I GRGCYC 2 cut(s) 802, 2245
Eco31I GGTCTC 2 cut(s) 191, 1134
Eco47I GGWCC 6 cut(s) 270, 352, 613, 994, 1357, 1947
Eco53kI GAGCTC 2 cut(s) 800, 2243
Eco57I CTGAAG 4 cut(s) 603, 1359, 1757, 2201
Eco81I CCTNAGG 2 cut(s) 999, 1876
Eco88I CYCGRG 1 cut(s) 903
Eco91I GGTNACC 1 cut(s) 367
EcoICRI GAGCTC 2 cut(s) 800, 2243
EcoO109I RGGNCCY 1 cut(s) 994
EcoO65I GGTNACC 1 cut(s) 367
EcoRII CCWGG 6 cut(s) 266, 645, 872, 1460, 1949, 1978
EcoT22I ATGCAT 2 cut(s) 1027, 2329
EcoT38I GRGCYC 2 cut(s) 802, 2245
Esp3I CGTCTC 1 cut(s) 487
FaeI CATG 5 cut(s) 142, 641, 1739, 2260, 2327
FaqI GGGAC 3 cut(s) 338, 1212, 2285
FatI CATG 5 cut(s) 138, 637, 1735, 2256, 2323
FbaI TGATCA 2 cut(s) 1513, 2155
FblI GTMKAC 2 cut(s) 71, 1614
FokI GGATG 3 cut(s) 462, 1580, 2321
FriOI GRGCYC 2 cut(s) 802, 2245
FspBI CTAG 7 cut(s) 257, 531, 921, 1029, 1104, 1202, 1400
GlaI GCGC 2 cut(s) 330, 911
GsaI CCCAGC 2 cut(s) 175, 2127
GsuI CTGGAG 2 cut(s) 1520, 1932
HaeIII GGCC 6 cut(s) 863, 1336, 1548, 1672, 2210, 2233
HapII CCGG 3 cut(s) 238, 466, 1387
HgaI GACGC 2 cut(s) 1793, 2341
HhaI GCGC 2 cut(s) 331, 912
Hin1II CATG 5 cut(s) 142, 641, 1739, 2260, 2327
Hin6I GCGC 2 cut(s) 329, 910
HinP1I GCGC 2 cut(s) 329, 910
HincII GTYRAC 2 cut(s) 1369, 1858
HindII GTYRAC 2 cut(s) 1369, 1858
HindIII AAGCTT 1 cut(s) 749
HpaII CCGG 3 cut(s) 238, 466, 1387
HphI GGTGA 8 cut(s) 242, 379, 389, 404, 548, 668, 998, 1994
Hpy166II GTNNAC 8 cut(s) 72, 205, 233, 1369, 1615, 1858, 1947, 1985
Hpy8I GTNNAC 8 cut(s) 72, 205, 233, 1369, 1615, 1858, 1947, 1985
HpyAV CCTTC 8 cut(s) 221, 627, 647, 853, 1139, 1687, 2051, 2243
HpyCH4IV ACGT 3 cut(s) 51, 496, 979
HpySE526I ACGT 3 cut(s) 51, 496, 979
Hsp92II CATG 5 cut(s) 142, 641, 1739, 2260, 2327
HspAI GCGC 2 cut(s) 329, 910
Ksp22I TGATCA 2 cut(s) 1513, 2155
LmnI GCTCC 3 cut(s) 917, 2152, 2240
LweI GCATC 7 cut(s) 227, 392, 943, 1012, 1034, 1153, 1732
MabI ACCWGGT 2 cut(s) 266, 1949
MaeI CTAG 7 cut(s) 257, 531, 921, 1029, 1104, 1202, 1400
MaeII ACGT 3 cut(s) 51, 496, 979
MaeIII GTNAC 4 cut(s) 367, 524, 880, 966
MflI RGATCY 4 cut(s) 56, 584, 923, 1378
MhlI GDGCHC 3 cut(s) 802, 1193, 2245
MlsI TGGCCA 1 cut(s) 2210
MluNI TGGCCA 1 cut(s) 2210
MlyI GAGTC 9 cut(s) 388, 411, 521, 536, 829, 877, 1364, 1481, 2307
MmeI TCCRAC 5 cut(s) 503, 1073, 1288, 1554, 1761
Mox20I TGGCCA 1 cut(s) 2210
Mph1103I ATGCAT 2 cut(s) 1027, 2329
MroXI GAANNNNTTC 2 cut(s) 448, 1076
MscI TGGCCA 1 cut(s) 2210
MseI TTAA 3 cut(s) 1283, 1883, 1904
MslI CAYNNNNRTG 2 cut(s) 1137, 1740
Msp20I TGGCCA 1 cut(s) 2210
MspA1I CMGCKG 5 cut(s) 175, 941, 1622, 2096, 2117
MspI CCGG 3 cut(s) 238, 466, 1387
MspR9I CCNGG 6 cut(s) 268, 647, 874, 1462, 1951, 1980
Mva1269I GAATGC 1 cut(s) 1876
MvaI CCWGG 6 cut(s) 268, 647, 874, 1462, 1951, 1980
NlaIII CATG 5 cut(s) 142, 641, 1739, 2260, 2327
NlaIV GGNNCC 5 cut(s) 354, 615, 996, 1266, 2148
NmeAIII GCCGAG 1 cut(s) 2321
NmuCI GTSAC 3 cut(s) 367, 524, 880
NsiI ATGCAT 2 cut(s) 1027, 2329
NspI RCATGY 1 cut(s) 2327
PaeI GCATGC 1 cut(s) 2327
PaeR7I CTCGAG 1 cut(s) 903
PcsI WCGNNNNNNNCGW 1 cut(s) 976
PctI GAATGC 1 cut(s) 1876
PdmI GAANNNNTTC 2 cut(s) 448, 1076
PfeI GAWTC 4 cut(s) 503, 701, 784, 2253
PflFI GACNNNGTC 2 cut(s) 1324, 1951
PfoI TCCNGGA 1 cut(s) 872
PleI GAGTC 9 cut(s) 388, 410, 521, 536, 828, 877, 1364, 1481, 2306
PpsI GAGTC 9 cut(s) 388, 410, 521, 536, 828, 877, 1364, 1481, 2306
Ppu21I YACGTR 1 cut(s) 52
PpuMI RGGWCCY 1 cut(s) 994
PshBI ATTAAT 1 cut(s) 1283
PsiI TTATAA 1 cut(s) 663
Psp124BI GAGCTC 2 cut(s) 802, 2245
Psp1406I AACGTT 1 cut(s) 979
Psp5II RGGWCCY 1 cut(s) 994
Psp6I CCWGG 6 cut(s) 266, 645, 872, 1460, 1949, 1978
PspEI GGTNACC 1 cut(s) 367
PspFI CCCAGC 2 cut(s) 171, 2123
PspGI CCWGG 6 cut(s) 266, 645, 872, 1460, 1949, 1978
PspN4I GGNNCC 5 cut(s) 354, 615, 996, 1266, 2148
PspPI GGNCC 8 cut(s) 270, 352, 613, 994, 1335, 1357, 1947, 2231
PspPPI RGGWCCY 1 cut(s) 994
PstI CTGCAG 1 cut(s) 2116
PstNI CAGNNNCTG 2 cut(s) 1350, 1382
PsuI RGATCY 4 cut(s) 56, 584, 923, 1378
PsyI GACNNNGTC 2 cut(s) 1324, 1951
PvuII CAGCTG 3 cut(s) 941, 1622, 2117
RsaI GTAC 4 cut(s) 50, 1302, 1394, 2073
RsaNI GTAC 4 cut(s) 49, 1301, 1393, 2072
RseI CAYNNNNRTG 2 cut(s) 1137, 1740
Rsr2I CGGWCCG 1 cut(s) 1357
RsrII CGGWCCG 1 cut(s) 1357
SacI GAGCTC 2 cut(s) 802, 2245
SaqAI TTAA 3 cut(s) 1283, 1883, 1904
Sau96I GGNCC 8 cut(s) 270, 352, 613, 994, 1335, 1357, 1947, 2231
SchI GAGTC 9 cut(s) 388, 411, 521, 536, 829, 877, 1364, 1481, 2307
ScrFI CCNGG 6 cut(s) 268, 647, 874, 1462, 1951, 1980
SduI GDGCHC 3 cut(s) 802, 1193, 2245
SexAI ACCWGGT 2 cut(s) 266, 1949
SfaNI GCATC 7 cut(s) 227, 392, 943, 1012, 1034, 1153, 1732
SfcI CTRYAG 2 cut(s) 1342, 2112
Sfr274I CTCGAG 1 cut(s) 903
SinI GGWCC 6 cut(s) 270, 352, 613, 994, 1357, 1947
SlaI CTCGAG 1 cut(s) 903
SmiMI CAYNNNNRTG 2 cut(s) 1137, 1740
SmlI CTYRAG 4 cut(s) 188, 588, 903, 1688
SmoI CTYRAG 4 cut(s) 188, 588, 903, 1688
SnaBI TACGTA 1 cut(s) 52
SpeI ACTAGT 1 cut(s) 1201
SphI GCATGC 1 cut(s) 2327
SspMI CTAG 7 cut(s) 257, 531, 921, 1029, 1104, 1202, 1400
SstI GAGCTC 2 cut(s) 802, 2245
StyD4I CCNGG 6 cut(s) 266, 645, 872, 1460, 1949, 1978
TaiI ACGT 3 cut(s) 54, 499, 982
TaqI TCGA 3 cut(s) 904, 1937, 2136
TaqII GACCGA 3 cut(s) 1079, 1116, 1345
TatI WGTACW 1 cut(s) 1392
TauI GCSGC 7 cut(s) 178, 181, 610, 1336, 1551, 2099, 2236
TfiI GAWTC 4 cut(s) 503, 701, 784, 2253
Tru1I TTAA 3 cut(s) 1283, 1883, 1904
Tru9I TTAA 3 cut(s) 1283, 1883, 1904
TscAI CASTG 5 cut(s) 434, 721, 963, 1180, 1523
TseFI GTSAC 3 cut(s) 367, 524, 880
Tsp45I GTSAC 3 cut(s) 367, 524, 880
TspGWI ACGGA 1 cut(s) 1349
TspRI CASTG 5 cut(s) 434, 721, 963, 1180, 1523
Tth111I GACNNNGTC 2 cut(s) 1324, 1951
VpaK11BI GGWCC 6 cut(s) 270, 352, 613, 994, 1357, 1947
VspI ATTAAT 1 cut(s) 1283
XapI RAATTY 3 cut(s) 39, 833, 1051
XbaI TCTAGA 1 cut(s) 1028
XceI RCATGY 1 cut(s) 2327
XcmI CCANNNNNNNNNTGG 2 cut(s) 179, 1468
XhoI CTCGAG 1 cut(s) 903
XmiI GTMKAC 2 cut(s) 71, 1614
XmnI GAANNNNTTC 2 cut(s) 448, 1076
XspI CTAG 7 cut(s) 257, 531, 921, 1029, 1104, 1202, 1400
Zsp2I ATGCAT 2 cut(s) 1027, 2329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.