Rmu_sc0005112.1_g000003

RING-like zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005112.1
OG0016345
Physical Location & Seq
Reverse (-)
17552 .. 18316
765 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 765 bp
atgttgtttgagaaatattcattcgagagtaaagtgtggcatacaagcgaacccaacccaaggggaggcgaggacttggttctgatcgaaataaaggtctacactaagatcggagccgccttgaggattggttctccaacgaagtatggcgaaccataccacagtgaaggtagagaactcatcatttctaatctctctcgtagcgagctattatccaataagagtgagtatacatggagaatggtcgagttcttttcaggcacatttaaggaggagccactccccgatgatgtgcgacgatcttgtattgaagaagtattccgggtggtcgaaaaagatctagtggtggcctcatcattttctgttattcatgtcgacatattggaagtggttgaccacgtgcttgagtctgctgccgttgcctttctcgacgatgcgatatcatcaatcgagggtttggagaaagtgagagttgatagctctttcctggggttagaagactcttgtgctatttgtatggaggacctaattgacagagacggcaagaaacaatttaaacctaagaggaagagcaagaggctgcttggatttcaaagcctcagcaccaccattgctaaaaggccaagaaaagagccgccccgtttgagggtaattgctcgcttgccctgctcacaccattttcatggagattgcattgtcaagtggctcaaaaacaatcatgtctgtcccctgtgccgataccaagtgggaggtcggttcaagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

254

Amino Acids

29.02

Weight (kDa)

8.11

Isoelectric Point (pI)

47.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-rbx1 PF12678 217 - 246 7.7e-08 RING-H2 zinc finger domain
zf-RING_2 PF13639 218 - 246 3e-10 Ring finger domain
zf-C3HC4 PF00097 220 - 245 1e-06 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2 PF13923 221 - 245 2.4e-06 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 3 cut(s) 99, 230, 375
AciI CCGC 2 cut(s) 117, 635
AcvI CACGTG 1 cut(s) 400
AfiI CCNNNNNNNGG 5 cut(s) 60, 65, 123, 645, 646
AgsI TTSAA 3 cut(s) 311, 593, 760
AjnI CCWGG 1 cut(s) 486
AluBI AGCT 2 cut(s) 208, 480
AluI AGCT 2 cut(s) 208, 480
Alw26I GTCTC 1 cut(s) 531
AoxI GGCC 2 cut(s) 348, 620
ApeKI GCWGC 2 cut(s) 413, 580
ArsI GACNNNNNNTTYG 2 cut(s) 81, 113
AspS9I GGNCC 1 cut(s) 523
AsuC2I CCSGG 1 cut(s) 323
AvaII GGWCC 1 cut(s) 523
BbrPI CACGTG 1 cut(s) 400
BbsI GAAGAC 1 cut(s) 504
BbvCI CCTCAGC 1 cut(s) 599
BbvI GCAGC 2 cut(s) 400, 567
BceAI ACGGC 2 cut(s) 401, 556
BciT130I CCWGG 1 cut(s) 488
BcnI CCSGG 1 cut(s) 323
BcoDI GTCTC 1 cut(s) 531
BfaI CTAG 1 cut(s) 341
BglII AGATCT 1 cut(s) 337
BisI GCNGC 4 cut(s) 117, 414, 581, 635
BlsI GCNGC 4 cut(s) 118, 415, 582, 636
Bme1390I CCNGG 2 cut(s) 323, 488
Bme18I GGWCC 1 cut(s) 523
BmgT120I GGNCC 1 cut(s) 523
BmiI GGNNCC 2 cut(s) 115, 276
BmrFI CCNGG 2 cut(s) 323, 488
BmsI GCATC 1 cut(s) 424
BpiI GAAGAC 1 cut(s) 504
Bpu10I CCTNAGC 1 cut(s) 599
BpuEI CTTGAG 2 cut(s) 142, 425
BpuMI CCSGG 1 cut(s) 323
BsaAI YACGTR 1 cut(s) 400
BsaJI CCNNGG 2 cut(s) 59, 487
Bsc4I CCNNNNNNNGG 5 cut(s) 60, 65, 123, 645, 646
Bse3DI GCAATG 1 cut(s) 609
BseBI CCWGG 1 cut(s) 488
BseDI CCNNGG 2 cut(s) 59, 487
BseLI CCNNNNNNNGG 5 cut(s) 60, 65, 123, 645, 646
BseMI GCAATG 1 cut(s) 609
BseMII CTCAG 1 cut(s) 613
BseRI GAGGAG 1 cut(s) 287
BseXI GCAGC 2 cut(s) 400, 567
BshFI GGCC 2 cut(s) 350, 622
BsiSI CCGG 1 cut(s) 322
BslFI GGGAC 1 cut(s) 711
BslI CCNNNNNNNGG 5 cut(s) 60, 65, 123, 645, 646
BsmAI GTCTC 1 cut(s) 531
BsmBI CGTCTC 1 cut(s) 531
BsmFI GGGAC 1 cut(s) 711
BsnI GGCC 2 cut(s) 350, 622
Bsp143I GATC 4 cut(s) 84, 108, 299, 337
BspACI CCGC 2 cut(s) 117, 635
BspANI GGCC 2 cut(s) 350, 622
BspCNI CTCAG 1 cut(s) 612
BspLI GGNNCC 2 cut(s) 115, 276
BspQI GCTCTTC 1 cut(s) 563
BsrDI GCAATG 1 cut(s) 609
BssECI CCNNGG 2 cut(s) 59, 487
BssMI GATC 4 cut(s) 84, 108, 299, 337
BssNAI GTATAC 1 cut(s) 231
BssT1I CCWWGG 1 cut(s) 59
Bst1107I GTATAC 1 cut(s) 231
Bst2UI CCWGG 1 cut(s) 488
Bst4CI ACNGT 1 cut(s) 164
Bst6I CTCTTC 1 cut(s) 563
BstBAI YACGTR 1 cut(s) 400
BstC8I GCNNGC 3 cut(s) 206, 658, 662
BstDEI CTNAG 3 cut(s) 105, 561, 599
BstKTI GATC 4 cut(s) 87, 111, 302, 340
BstMAI GTCTC 1 cut(s) 531
BstMBI GATC 4 cut(s) 84, 108, 299, 337
BstMWI GCNNNNNNNGC 2 cut(s) 419, 666
BstNI CCWGG 1 cut(s) 488
BstSCI CCNGG 2 cut(s) 321, 486
BstV1I GCAGC 2 cut(s) 400, 567
BstV2I GAAGAC 1 cut(s) 504
BstX2I RGATCY 1 cut(s) 337
BstXI CCANNNNNNTGG 1 cut(s) 683
BstYI RGATCY 1 cut(s) 337
BstZ17I GTATAC 1 cut(s) 231
BsuRI GGCC 2 cut(s) 350, 622
BtsIMutI CAGTG 1 cut(s) 169
Cac8I GCNNGC 3 cut(s) 206, 658, 662
Cfr13I GGNCC 1 cut(s) 523
CviAII CATG 4 cut(s) 234, 371, 683, 719
DdeI CTNAG 3 cut(s) 105, 561, 599
DpnI GATC 4 cut(s) 86, 110, 301, 339
DpnII GATC 4 cut(s) 84, 108, 299, 337
DraI TTTAAA 1 cut(s) 556
Eam1104I CTCTTC 1 cut(s) 563
EarI CTCTTC 1 cut(s) 563
Eco130I CCWWGG 1 cut(s) 59
Eco32I GATATC 1 cut(s) 441
Eco47I GGWCC 1 cut(s) 523
Eco72I CACGTG 1 cut(s) 400
EcoO109I RGGNCCY 1 cut(s) 523
EcoRII CCWGG 1 cut(s) 486
EcoRV GATATC 1 cut(s) 441
EcoT14I CCWWGG 1 cut(s) 59
ErhI CCWWGG 1 cut(s) 59
Esp3I CGTCTC 1 cut(s) 531
FaeI CATG 4 cut(s) 237, 374, 686, 722
FaqI GGGAC 1 cut(s) 711
FatI CATG 4 cut(s) 233, 370, 682, 718
FblI GTMKAC 3 cut(s) 99, 230, 375
Fnu4HI GCNGC 4 cut(s) 117, 414, 581, 635
Fsp4HI GCNGC 4 cut(s) 117, 414, 581, 635
FspBI CTAG 1 cut(s) 341
GluI GCNGC 4 cut(s) 117, 414, 581, 635
HaeIII GGCC 2 cut(s) 350, 622
HapII CCGG 1 cut(s) 322
Hin1II CATG 4 cut(s) 237, 374, 686, 722
HincII GTYRAC 2 cut(s) 376, 394
HindII GTYRAC 2 cut(s) 376, 394
HinfI GANTC 2 cut(s) 407, 500
HpaII CCGG 1 cut(s) 322
Hpy166II GTNNAC 4 cut(s) 100, 231, 376, 394
Hpy188I TCNGA 2 cut(s) 84, 113
Hpy188III TCNNGA 2 cut(s) 25, 428
Hpy8I GTNNAC 4 cut(s) 100, 231, 376, 394
Hpy99I CGWCG 2 cut(s) 300, 434
HpyAV CCTTC 1 cut(s) 161
HpyCH4III ACNGT 1 cut(s) 164
HpyCH4IV ACGT 1 cut(s) 399
HpyCH4V TGCA 1 cut(s) 693
HpyF10VI GCNNNNNNNGC 2 cut(s) 419, 666
HpyF3I CTNAG 3 cut(s) 105, 561, 599
HpySE526I ACGT 1 cut(s) 399
Hsp92II CATG 4 cut(s) 237, 374, 686, 722
Kzo9I GATC 4 cut(s) 84, 108, 299, 337
LguI GCTCTTC 1 cut(s) 563
LmnI GCTCC 2 cut(s) 113, 274
LpnPI CCDG 6 cut(s) 243, 335, 473, 500, 679, 743
Lsp1109I GCAGC 2 cut(s) 400, 567
LweI GCATC 1 cut(s) 424
MaeI CTAG 1 cut(s) 341
MaeII ACGT 1 cut(s) 399
MalI GATC 4 cut(s) 86, 110, 301, 339
MboI GATC 4 cut(s) 84, 108, 299, 337
MboII GAAGA 3 cut(s) 323, 509, 580
MflI RGATCY 1 cut(s) 337
MluCI AATT 3 cut(s) 528, 551, 651
MlyI GAGTC 2 cut(s) 416, 494
MmeI TCCRAC 1 cut(s) 161
MseI TTAA 2 cut(s) 267, 555
MslI CAYNNNNRTG 1 cut(s) 681
MspI CCGG 1 cut(s) 322
MspR9I CCNGG 2 cut(s) 323, 488
MvaI CCWGG 1 cut(s) 488
MwoI GCNNNNNNNGC 2 cut(s) 419, 666
NciI CCSGG 1 cut(s) 323
NdeII GATC 4 cut(s) 84, 108, 299, 337
NlaIII CATG 4 cut(s) 237, 374, 686, 722
NlaIV GGNNCC 2 cut(s) 115, 276
PciSI GCTCTTC 1 cut(s) 563
PkrI GCNGC 4 cut(s) 118, 415, 582, 636
PleI GAGTC 2 cut(s) 415, 494
PmaCI CACGTG 1 cut(s) 400
PmlI CACGTG 1 cut(s) 400
PpsI GAGTC 2 cut(s) 415, 494
Ppu21I YACGTR 1 cut(s) 400
PpuMI RGGWCCY 1 cut(s) 523
Psp5II RGGWCCY 1 cut(s) 523
Psp6I CCWGG 1 cut(s) 486
PspCI CACGTG 1 cut(s) 400
PspGI CCWGG 1 cut(s) 486
PspN4I GGNNCC 2 cut(s) 115, 276
PspPI GGNCC 1 cut(s) 523
PspPPI RGGWCCY 1 cut(s) 523
PsuI RGATCY 1 cut(s) 337
RseI CAYNNNNRTG 1 cut(s) 681
SalI GTCGAC 1 cut(s) 374
SapI GCTCTTC 1 cut(s) 563
SaqAI TTAA 2 cut(s) 267, 555
SatI GCNGC 4 cut(s) 117, 414, 581, 635
Sau3AI GATC 4 cut(s) 84, 108, 299, 337
Sau96I GGNCC 1 cut(s) 523
SchI GAGTC 2 cut(s) 416, 494
ScrFI CCNGG 2 cut(s) 323, 488
SetI ASST 8 cut(s) 99, 172, 210, 402, 482, 528, 562, 754
SfaNI GCATC 1 cut(s) 424
SinI GGWCC 1 cut(s) 523
SmiMI CAYNNNNRTG 1 cut(s) 681
SmlI CTYRAG 2 cut(s) 121, 404
SmoI CTYRAG 2 cut(s) 121, 404
Sse9I AATT 3 cut(s) 528, 551, 651
SsiI CCGC 2 cut(s) 117, 635
SspI AATATT 1 cut(s) 17
SspMI CTAG 1 cut(s) 341
StyD4I CCNGG 2 cut(s) 321, 486
StyI CCWWGG 1 cut(s) 59
TaaI ACNGT 1 cut(s) 164
TaiI ACGT 1 cut(s) 402
TaqI TCGA 7 cut(s) 24, 87, 246, 330, 375, 429, 450
TasI AATT 3 cut(s) 528, 551, 651
TauI GCSGC 2 cut(s) 119, 637
Tru1I TTAA 2 cut(s) 267, 555
Tru9I TTAA 2 cut(s) 267, 555
TscAI CASTG 1 cut(s) 169
TseI GCWGC 2 cut(s) 413, 580
TspDTI ATGAA 3 cut(s) 9, 359, 671
TspRI CASTG 1 cut(s) 169
VpaK11BI GGWCC 1 cut(s) 523
XmiI GTMKAC 3 cut(s) 99, 230, 375
XspI CTAG 1 cut(s) 341
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.