Rmu_sc0005127.1_g000008

FAD-NAD(P)-binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005127.1
OG0007219
Physical Location & Seq
Forward (+)
51686 .. 53915
2230 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 792 bp
atggggacaccagtaggctcagctttaactccatctccctcctcttcttctccttatctcttctctcattctcagagtccttctcgtcttcggaacgccgtcctcggcgctggcttcgccggcctctccgtcgcttaccactcgctgaagcagaggcccaaggactcgaatctccgcatcgacgtcttcgatgaagtcggaatcggcggcggcgcttccggcgtctccggcggccttcttcacccttactctcccaaagccaagctcctatggcgcgccgccgagtgctgggatgaggctttgaggctgttgaacgtcgccgaagcagctgtgcctcccaactccgatgatgctcccattgttagaagaagaggcatcttgagaccagctttgagcatgaagaacatgatgaatggccttgccagttgcagaatagaaaccattgacgaggatggtgcccaagatcttgtacccggcatctgtccaccgttcaatacgtctttttatatgcctgaagctgttaatgtccatcctcaacgctatctcgacgcactcttcttagcgtgtcaaactttggtgaaagaactttgtgcttctggattgggggtaaaagaattgcatttgcacaaggactccattcacaaactgctagacttggaaggggaataccaggcagtaattgtatgtctaggagccaaagcagatctgcttcctgagctctctgggaggcttccattgaggacatgcagaggtgtcgttgcacatctgcagctgcctgataacatggggtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DAO

Protein Analysis

263

Amino Acids

28.2

Weight (kDa)

6.7

Isoelectric Point (pI)

60.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DAO PF01266 33 - 260 1.7e-24 FAD dependent oxidoreductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 186
AccB1I GGYRCC 1 cut(s) 455
AccII CGCG 1 cut(s) 276
AciI CCGC 5 cut(s) 175, 207, 210, 231, 279
AcuI CTGAAG 2 cut(s) 167, 534
AcyI GRCGYC 2 cut(s) 183, 222
AfaI GTAC 1 cut(s) 471
AfiI CCNNNNNNNGG 1 cut(s) 288
AgsI TTSAA 2 cut(s) 313, 493
AjnI CCWGG 1 cut(s) 669
AluBI AGCT 7 cut(s) 23, 265, 329, 389, 518, 718, 772
AluI AGCT 7 cut(s) 23, 265, 329, 389, 518, 718, 772
Alw21I GWGCWC 1 cut(s) 720
Alw26I GTCTC 2 cut(s) 229, 376
AoxI GGCC 4 cut(s) 121, 155, 232, 415
ApeKI GCWGC 3 cut(s) 326, 769, 772
AscI GGCGCGCC 1 cut(s) 274
AspLEI GCGC 4 cut(s) 110, 215, 276, 278
AspS9I GGNCC 1 cut(s) 156
AsuC2I CCSGG 1 cut(s) 474
AsuHPI GGTGA 2 cut(s) 233, 589
BaeGI GKGCMC 1 cut(s) 460
BanI GGYRCC 1 cut(s) 455
BanII GRGCYC 1 cut(s) 720
BbsI GAAGAC 2 cut(s) 80, 178
Bbv12I GWGCWC 1 cut(s) 720
BbvI GCAGC 3 cut(s) 338, 759, 781
BccI CCATC 3 cut(s) 40, 446, 537
BceAI ACGGC 1 cut(s) 83
BcgI CGANNNNNNTGC 4 cut(s) 437, 471, 736, 770
BciT130I CCWGG 1 cut(s) 671
BcnI CCSGG 1 cut(s) 474
BcoDI GTCTC 2 cut(s) 229, 376
BfaI CTAG 2 cut(s) 650, 689
BfmI CTRYAG 1 cut(s) 767
BfoI RGCGCY 2 cut(s) 111, 216
BglII AGATCT 2 cut(s) 463, 703
BisI GCNGC 7 cut(s) 208, 211, 232, 279, 327, 770, 773
BlpI GCTNAGC 1 cut(s) 19
BlsI GCNGC 7 cut(s) 209, 212, 233, 280, 328, 771, 774
Bme1390I CCNGG 2 cut(s) 474, 671
BmgT120I GGNCC 1 cut(s) 156
BmiI GGNNCC 2 cut(s) 457, 694
BmrFI CCNGG 2 cut(s) 474, 671
BmsI GCATC 4 cut(s) 186, 340, 384, 486
BpiI GAAGAC 2 cut(s) 80, 178
BplI GAGNNNNNCTC 2 cut(s) 67, 99
Bpu10I CCTNAGC 1 cut(s) 714
Bpu1102I GCTNAGC 1 cut(s) 19
BpuEI CTTGAG 1 cut(s) 400
BpuMI CCSGG 1 cut(s) 474
BsaHI GRCGYC 2 cut(s) 183, 222
BsaI GGTCTC 1 cut(s) 376
BsaJI CCNNGG 2 cut(s) 103, 159
BsaXI ACNNNNNCTCC 4 cut(s) 19, 49, 617, 647
Bsc4I CCNNNNNNNGG 1 cut(s) 288
Bse118I RCCGGY 1 cut(s) 119
Bse1I ACTGG 2 cut(s) 11, 423
BseBI CCWGG 1 cut(s) 671
BseDI CCNNGG 2 cut(s) 103, 159
BseGI GGATG 3 cut(s) 298, 457, 529
BseLI CCNNNNNNNGG 1 cut(s) 288
BseMII CTCAG 3 cut(s) 33, 86, 705
BseNI ACTGG 2 cut(s) 11, 423
BsePI GCGCGC 1 cut(s) 274
BseRI GAGGAG 1 cut(s) 31
BseSI GKGCMC 1 cut(s) 460
BseXI GCAGC 3 cut(s) 338, 759, 781
BseYI CCCAGC 1 cut(s) 288
Bsh1236I CGCG 1 cut(s) 276
BshFI GGCC 4 cut(s) 123, 157, 234, 417
BshNI GGYRCC 1 cut(s) 455
BsiHKAI GWGCWC 1 cut(s) 720
BsiSI CCGG 4 cut(s) 120, 219, 228, 474
BslFI GGGAC 1 cut(s) 19
BslI CCNNNNNNNGG 1 cut(s) 288
BsmAI GTCTC 2 cut(s) 229, 376
BsmBI CGTCTC 1 cut(s) 229
BsmFI GGGAC 1 cut(s) 19
BsnI GGCC 4 cut(s) 123, 157, 234, 417
Bso31I GGTCTC 1 cut(s) 376
Bsp1286I GDGCHC 2 cut(s) 460, 720
Bsp143I GATC 2 cut(s) 463, 703
Bsp1720I GCTNAGC 1 cut(s) 19
BspACI CCGC 5 cut(s) 175, 207, 210, 231, 279
BspANI GGCC 4 cut(s) 123, 157, 234, 417
BspCNI CTCAG 3 cut(s) 32, 85, 706
BspFNI CGCG 1 cut(s) 276
BspLI GGNNCC 2 cut(s) 457, 694
BspMAI CTGCAG 1 cut(s) 771
BspT107I GGYRCC 1 cut(s) 455
BspTNI GGTCTC 1 cut(s) 376
BsrFI RCCGGY 1 cut(s) 119
BsrI ACTGG 2 cut(s) 11, 423
BssAI RCCGGY 1 cut(s) 119
BssECI CCNNGG 2 cut(s) 103, 159
BssHII GCGCGC 1 cut(s) 274
BssMI GATC 2 cut(s) 463, 703
BssNI GRCGYC 2 cut(s) 183, 222
BssT1I CCWWGG 1 cut(s) 159
Bst2UI CCWGG 1 cut(s) 671
Bst4CI ACNGT 1 cut(s) 489
Bst6I CTCTTC 4 cut(s) 49, 65, 364, 560
BstACI GRCGYC 2 cut(s) 183, 222
BstC8I GCNNGC 3 cut(s) 112, 121, 276
BstDEI CTNAG 4 cut(s) 19, 72, 559, 714
BstF5I GGATG 3 cut(s) 298, 457, 529
BstFNI CGCG 1 cut(s) 276
BstH2I RGCGCY 2 cut(s) 111, 216
BstHHI GCGC 4 cut(s) 110, 215, 276, 278
BstKTI GATC 2 cut(s) 466, 706
BstMAI GTCTC 2 cut(s) 229, 376
BstMBI GATC 2 cut(s) 463, 703
BstMWI GCNNNNNNNGC 7 cut(s) 116, 120, 219, 228, 271, 326, 715
BstNI CCWGG 1 cut(s) 671
BstNSI RCATGY 1 cut(s) 747
BstSCI CCNGG 2 cut(s) 472, 669
BstSFI CTRYAG 1 cut(s) 767
BstSLI GKGCMC 1 cut(s) 460
BstUI CGCG 1 cut(s) 276
BstV1I GCAGC 3 cut(s) 338, 759, 781
BstV2I GAAGAC 2 cut(s) 80, 178
BstX2I RGATCY 2 cut(s) 463, 703
BstYI RGATCY 2 cut(s) 463, 703
BsuRI GGCC 4 cut(s) 123, 157, 234, 417
BtsCI GGATG 3 cut(s) 298, 457, 529
Cac8I GCNNGC 3 cut(s) 112, 121, 276
CfoI GCGC 4 cut(s) 110, 215, 276, 278
Cfr10I RCCGGY 1 cut(s) 119
Cfr13I GGNCC 1 cut(s) 156
CseI GACGC 2 cut(s) 211, 557
Csp6I GTAC 1 cut(s) 470
CviAII CATG 4 cut(s) 397, 406, 744, 784
CviQI GTAC 1 cut(s) 470
DdeI CTNAG 4 cut(s) 19, 72, 559, 714
DpnI GATC 2 cut(s) 465, 705
DpnII GATC 2 cut(s) 463, 703
Eam1104I CTCTTC 4 cut(s) 49, 65, 364, 560
EarI CTCTTC 4 cut(s) 49, 65, 364, 560
Ecl136II GAGCTC 1 cut(s) 718
Eco130I CCWWGG 1 cut(s) 159
Eco24I GRGCYC 1 cut(s) 720
Eco31I GGTCTC 1 cut(s) 376
Eco53kI GAGCTC 1 cut(s) 718
Eco57I CTGAAG 2 cut(s) 167, 534
EcoICRI GAGCTC 1 cut(s) 718
EcoRII CCWGG 1 cut(s) 669
EcoT14I CCWWGG 1 cut(s) 159
EcoT38I GRGCYC 1 cut(s) 720
ErhI CCWWGG 1 cut(s) 159
Esp3I CGTCTC 1 cut(s) 229
FaeI CATG 4 cut(s) 400, 409, 747, 787
FaiI YATR 8 cut(s) 271, 398, 407, 507, 509, 685, 745, 785
FaqI GGGAC 1 cut(s) 19
FatI CATG 4 cut(s) 396, 405, 743, 783
Fnu4HI GCNGC 7 cut(s) 208, 211, 232, 279, 327, 770, 773
FokI GGATG 3 cut(s) 305, 464, 516
FriOI GRGCYC 1 cut(s) 720
Fsp4HI GCNGC 7 cut(s) 208, 211, 232, 279, 327, 770, 773
FspBI CTAG 2 cut(s) 650, 689
GlaI GCGC 4 cut(s) 109, 214, 275, 277
GluI GCNGC 7 cut(s) 208, 211, 232, 279, 327, 770, 773
GsaI CCCAGC 1 cut(s) 292
HaeII RGCGCY 2 cut(s) 111, 216
HaeIII GGCC 4 cut(s) 123, 157, 234, 417
HapII CCGG 4 cut(s) 120, 219, 228, 474
HgaI GACGC 2 cut(s) 211, 557
HhaI GCGC 4 cut(s) 110, 215, 276, 278
Hin1I GRCGYC 2 cut(s) 183, 222
Hin1II CATG 4 cut(s) 400, 409, 747, 787
Hin6I GCGC 4 cut(s) 108, 213, 274, 276
HinP1I GCGC 4 cut(s) 108, 213, 274, 276
HinfI GANTC 5 cut(s) 76, 164, 169, 201, 632
HpaII CCGG 4 cut(s) 120, 219, 228, 474
HphI GGTGA 2 cut(s) 233, 589
Hpy166II GTNNAC 1 cut(s) 485
Hpy188I TCNGA 4 cut(s) 75, 93, 200, 346
Hpy188III TCNNGA 4 cut(s) 379, 545, 597, 713
Hpy8I GTNNAC 1 cut(s) 485
Hpy99I CGWCG 4 cut(s) 134, 185, 320, 551
HpyAV CCTTC 3 cut(s) 90, 245, 653
HpyCH4III ACNGT 1 cut(s) 489
HpyCH4IV ACGT 3 cut(s) 183, 315, 497
HpyCH4V TGCA 6 cut(s) 429, 619, 625, 747, 761, 769
HpyF10VI GCNNNNNNNGC 7 cut(s) 116, 120, 219, 228, 271, 326, 715
HpyF3I CTNAG 4 cut(s) 19, 72, 559, 714
HpySE526I ACGT 3 cut(s) 183, 315, 497
Hsp92I GRCGYC 2 cut(s) 183, 222
Hsp92II CATG 4 cut(s) 400, 409, 747, 787
HspAI GCGC 4 cut(s) 108, 213, 274, 276
KroI GCCGGC 1 cut(s) 119
KroNI GCCGGC 1 cut(s) 121
Kzo9I GATC 2 cut(s) 463, 703
LmnI GCTCC 3 cut(s) 270, 358, 692
Lsp1109I GCAGC 3 cut(s) 338, 759, 781
LweI GCATC 4 cut(s) 186, 340, 384, 486
MaeI CTAG 2 cut(s) 650, 689
MaeII ACGT 3 cut(s) 183, 315, 497
MalI GATC 2 cut(s) 465, 705
MboI GATC 2 cut(s) 463, 703
MflI RGATCY 2 cut(s) 463, 703
MhlI GDGCHC 2 cut(s) 460, 720
MluCI AATT 2 cut(s) 614, 678
MlyI GAGTC 3 cut(s) 85, 158, 626
MmeI TCCRAC 1 cut(s) 178
MroNI GCCGGC 1 cut(s) 119
MseI TTAA 2 cut(s) 26, 522
MspA1I CMGCKG 2 cut(s) 329, 772
MspI CCGG 4 cut(s) 120, 219, 228, 474
MspR9I CCNGG 2 cut(s) 474, 671
MvaI CCWGG 1 cut(s) 671
MvnI CGCG 1 cut(s) 276
MwoI GCNNNNNNNGC 7 cut(s) 116, 120, 219, 228, 271, 326, 715
NaeI GCCGGC 1 cut(s) 121
NciI CCSGG 1 cut(s) 474
NdeII GATC 2 cut(s) 463, 703
NgoMIV GCCGGC 1 cut(s) 119
NlaIII CATG 4 cut(s) 400, 409, 747, 787
NlaIV GGNNCC 2 cut(s) 457, 694
NmeAIII GCCGAG 2 cut(s) 84, 307
NspI RCATGY 1 cut(s) 747
PalAI GGCGCGCC 1 cut(s) 274
PauI GCGCGC 1 cut(s) 274
PcsI WCGNNNNNNNCGW 1 cut(s) 186
PdiI GCCGGC 1 cut(s) 121
PfeI GAWTC 2 cut(s) 169, 201
PkrI GCNGC 7 cut(s) 209, 212, 233, 280, 328, 771, 774
PleI GAGTC 3 cut(s) 84, 158, 626
PpsI GAGTC 3 cut(s) 84, 158, 626
Psp124BI GAGCTC 1 cut(s) 720
Psp6I CCWGG 1 cut(s) 669
PspFI CCCAGC 1 cut(s) 288
PspGI CCWGG 1 cut(s) 669
PspN4I GGNNCC 2 cut(s) 457, 694
PspPI GGNCC 1 cut(s) 156
PstI CTGCAG 1 cut(s) 771
PsuI RGATCY 2 cut(s) 463, 703
PteI GCGCGC 1 cut(s) 274
PvuII CAGCTG 2 cut(s) 329, 772
RsaI GTAC 1 cut(s) 471
RsaNI GTAC 1 cut(s) 470
SacI GAGCTC 1 cut(s) 720
SaqAI TTAA 2 cut(s) 26, 522
SatI GCNGC 7 cut(s) 208, 211, 232, 279, 327, 770, 773
Sau3AI GATC 2 cut(s) 463, 703
Sau96I GGNCC 1 cut(s) 156
SchI GAGTC 3 cut(s) 85, 158, 626
ScrFI CCNGG 2 cut(s) 474, 671
SduI GDGCHC 2 cut(s) 460, 720
SfaNI GCATC 4 cut(s) 186, 340, 384, 486
SfcI CTRYAG 1 cut(s) 767
SgsI GGCGCGCC 1 cut(s) 274
SmlI CTYRAG 1 cut(s) 379
SmoI CTYRAG 1 cut(s) 379
Sse9I AATT 2 cut(s) 614, 678
SsiI CCGC 5 cut(s) 175, 207, 210, 231, 279
SspMI CTAG 2 cut(s) 650, 689
SstI GAGCTC 1 cut(s) 720
StyD4I CCNGG 2 cut(s) 472, 669
StyI CCWWGG 1 cut(s) 159
TaaI ACNGT 1 cut(s) 489
TaiI ACGT 3 cut(s) 186, 318, 500
TaqI TCGA 4 cut(s) 167, 180, 189, 546
TasI AATT 2 cut(s) 614, 678
TauI GCSGC 4 cut(s) 210, 213, 234, 281
TfiI GAWTC 2 cut(s) 169, 201
Tru1I TTAA 2 cut(s) 26, 522
Tru9I TTAA 2 cut(s) 26, 522
TseI GCWGC 3 cut(s) 326, 769, 772
TspDTI ATGAA 3 cut(s) 207, 413, 425
TspGWI ACGGA 1 cut(s) 118
XceI RCATGY 1 cut(s) 747
XspI CTAG 2 cut(s) 650, 689
ZraI GACGTC 1 cut(s) 184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.