Rmu_sc0005211.1_g000001

Protein TPX2-like isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005211.1
OG0005322
Physical Location & Seq
Forward (+)
7749 .. 12290
4542 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1509 bp
atggaggaagatatggaggtggagcaagtgtttacggcgcacgaagtggacattgactacgagtttgacgcggccaggttctttgattttagtcggcacgagacgccggtggaggcgcggcgggctgagctctggttcgaatccgccaagagctatcctccttctcctgttgtgacaaggatgatactaggaggggacattctcctgggaaatgtgaatacctccccaaaatctaaagatgtggagaatacaaatggcattggctgtaatatcggcgcgggccaagaatcgtgtgcaatggatgtaaatagcggagattgtgaaggaatgaataaagggattttcggcaacttgcaaagagttctaaatcaatcacatggagcaggcacagggttgacattcaatcattcaaaaggtcaaaataactcttcagtaaagccatctttccccaggaaatcaactttgatgaaacctacagcaagtcaacttgctaagcaaaatcgcctccctcatgttggtggttccagatttcagacactacatgttcaaaacagtgataagagcttctgtagctcttctggagttgaaactcaagctaccaaaaggcagaagttagagggaggtcactcgcaaaaggttactactgaagcaatgcagcaaactaatttcatccacaaggcacctaaaaaggtcgaaacttttgataagacgcatgccaagttgaaaattactattccaatagagcctgactttgaaacgacatatagggcgcaaagaataaggcctaagaatggatcagtgttggaacaagtgccatcagctcctcgaaaattcaaagcccgtccactgaacaaaaaaatttttgaggctccctcactgccacttccaaagaggagcactccgaagttgccagaatttcatgaatttcacctgaagacaatggaaagagctatgcaaaatacatctactgttccattatcctcacatcatttcaatggtcaagagaaggtgttggacaaacctagtgcttccactgttgcaggaaatggaaacagagaacccagaaggccgagtaaatgtcttaagcaggatggaagtgatgtaatgccaaaatttaaagctcatcctcttaataaaaagatcttttctagcaaaggggatatcggtgttttctggaatagcaaaagagaaaccactgtaccaatggaatttaattttcagacagagaggagaactcagcagattccgccaactgatcttttcagtaagctctctttaacatctgaactccagccaaataagggaactcagttcaacttgcctcagccaacatctgtatcagtgaaggactcaaaagaaaatagagcgaataatttccaaccagaacataagataatggtaaaagagaaatcttcactgtttggtggaaagcaagctctatttgggggtgccaggtccatcagtgatgttgataacaaatcaaggatgaggagtttgggagtccgctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPX2_importin

Protein Analysis

502

Amino Acids

56.0

Weight (kDa)

9.68

Isoelectric Point (pI)

42.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPX2_importin PF12214 241 - 406 1.4e-44 Cell cycle regulated microtubule associated protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 679, 1448
AccII CGCG 3 cut(s) 71, 118, 278
AciI CCGC 8 cut(s) 71, 118, 121, 144, 278, 312, 1247, 1504
AclWI GGATC 1 cut(s) 802
AcoI YGGCCR 1 cut(s) 72
AcsI RAATTY 6 cut(s) 830, 858, 914, 923, 1112, 1208
AcuI CTGAAG 3 cut(s) 414, 666, 953
AcyI GRCGYC 1 cut(s) 104
AdeI CACNNNGTG 1 cut(s) 46
AfaI GTAC 1 cut(s) 1200
AfiI CCNNNNNNNGG 3 cut(s) 515, 791, 1301
AflII CTTAAG 1 cut(s) 1082
AflIII ACRYGT 1 cut(s) 541
AgsI TTSAA 9 cut(s) 403, 411, 548, 587, 724, 755, 835, 994, 1315
AjnI CCWGG 4 cut(s) 74, 204, 449, 1451
Alw21I GWGCWC 2 cut(s) 132, 899
Alw26I GTCTC 1 cut(s) 95
AlwI GGATC 1 cut(s) 802
AoxI GGCC 4 cut(s) 72, 280, 782, 1067
ApeKI GCWGC 1 cut(s) 655
ApoI RAATTY 6 cut(s) 830, 858, 914, 923, 1112, 1208
ArsI GACNNNNNNTTYG 2 cut(s) 47, 79
Asp700I GAANNNNTTC 1 cut(s) 1373
AspLEI GCGC 4 cut(s) 40, 118, 278, 772
AspS9I GGNCC 2 cut(s) 280, 1455
AsuHPI GGTGA 1 cut(s) 920
AsuII TTCGAA 1 cut(s) 138
AvaII GGWCC 1 cut(s) 1455
BaeI ACNNNNGTAYC 4 cut(s) 1182, 1215, 1320, 1353
BanI GGYRCC 2 cut(s) 679, 1448
BanII GRGCYC 1 cut(s) 132
BauI CACGAG 1 cut(s) 98
BbsI GAAGAC 1 cut(s) 941
Bbv12I GWGCWC 2 cut(s) 132, 899
BbvCI CCTCAGC 1 cut(s) 1323
BbvI GCAGC 1 cut(s) 667
BccI CCATC 4 cut(s) 448, 823, 1085, 1466
BceAI ACGGC 1 cut(s) 51
BciT130I CCWGG 4 cut(s) 76, 206, 451, 1453
BcoDI GTCTC 1 cut(s) 95
BfaI CTAG 4 cut(s) 188, 1023, 1149, 1507
BfmI CTRYAG 2 cut(s) 474, 568
BfrI CTTAAG 1 cut(s) 1082
BglII AGATCT 1 cut(s) 1140
BisI GCNGC 3 cut(s) 72, 119, 656
BlpI GCTNAGC 2 cut(s) 126, 492
BlsI GCNGC 3 cut(s) 73, 120, 657
Bme1390I CCNGG 4 cut(s) 76, 206, 451, 1453
Bme18I GGWCC 1 cut(s) 1455
BmgT120I GGNCC 2 cut(s) 280, 1455
BmiI GGNNCC 4 cut(s) 523, 681, 870, 1450
BmrFI CCNGG 4 cut(s) 76, 206, 451, 1453
BpiI GAAGAC 1 cut(s) 941
BplI GAGNNNNNCTC 8 cut(s) 142, 174, 857, 889, 883, 915, 1219, 1251
BpmI CTGGAG 2 cut(s) 600, 1274
Bpu10I CCTNAGC 1 cut(s) 1323
Bpu1102I GCTNAGC 2 cut(s) 126, 492
Bpu14I TTCGAA 1 cut(s) 138
BpuEI CTTGAG 1 cut(s) 576
BsaHI GRCGYC 1 cut(s) 104
BsaJI CCNNGG 2 cut(s) 205, 449
BsaXI ACNNNNNCTCC 2 cut(s) 14, 44
Bsc4I CCNNNNNNNGG 3 cut(s) 515, 791, 1301
Bse118I RCCGGY 1 cut(s) 106
Bse3DI GCAATG 2 cut(s) 303, 657
BseBI CCWGG 4 cut(s) 76, 206, 451, 1453
BseDI CCNNGG 2 cut(s) 205, 449
BseGI GGATG 6 cut(s) 186, 307, 669, 1096, 1123, 1491
BseLI CCNNNNNNNGG 3 cut(s) 515, 791, 1301
BseMI GCAATG 2 cut(s) 303, 657
BseMII CTCAG 4 cut(s) 117, 1250, 1322, 1337
BseRI GAGGAG 4 cut(s) 813, 907, 1243, 1504
BseXI GCAGC 1 cut(s) 667
Bsh1236I CGCG 3 cut(s) 71, 118, 278
BshFI GGCC 4 cut(s) 74, 282, 784, 1069
BshNI GGYRCC 2 cut(s) 679, 1448
BsiHKAI GWGCWC 2 cut(s) 132, 899
BsiSI CCGG 1 cut(s) 107
BslFI GGGAC 1 cut(s) 209
BslI CCNNNNNNNGG 3 cut(s) 515, 791, 1301
BsmAI GTCTC 1 cut(s) 95
BsmBI CGTCTC 1 cut(s) 95
BsmFI GGGAC 1 cut(s) 209
BsnI GGCC 4 cut(s) 74, 282, 784, 1069
Bsp119I TTCGAA 1 cut(s) 138
Bsp1286I GDGCHC 2 cut(s) 132, 899
Bsp143I GATC 3 cut(s) 794, 1140, 1255
Bsp1720I GCTNAGC 2 cut(s) 126, 492
BspACI CCGC 8 cut(s) 71, 118, 121, 144, 278, 312, 1247, 1504
BspANI GGCC 4 cut(s) 74, 282, 784, 1069
BspCNI CTCAG 4 cut(s) 118, 1249, 1321, 1336
BspFNI CGCG 3 cut(s) 71, 118, 278
BspHI TCATGA 1 cut(s) 919
BspLI GGNNCC 4 cut(s) 523, 681, 870, 1450
BspPI GGATC 1 cut(s) 802
BspQI GCTCTTC 1 cut(s) 580
BspT104I TTCGAA 1 cut(s) 138
BspT107I GGYRCC 2 cut(s) 679, 1448
BspTI CTTAAG 1 cut(s) 1082
BsrDI GCAATG 2 cut(s) 303, 657
BsrFI RCCGGY 1 cut(s) 106
BssAI RCCGGY 1 cut(s) 106
BssECI CCNNGG 2 cut(s) 205, 449
BssMI GATC 3 cut(s) 794, 1140, 1255
BssNI GRCGYC 1 cut(s) 104
BssSI CACGAG 1 cut(s) 98
Bst2BI CACGAG 1 cut(s) 98
Bst2UI CCWGG 4 cut(s) 76, 206, 451, 1453
Bst4CI ACNGT 5 cut(s) 554, 970, 1036, 1198, 1419
Bst6I CTCTTC 2 cut(s) 433, 580
BstACI GRCGYC 1 cut(s) 104
BstAFI CTTAAG 1 cut(s) 1082
BstBI TTCGAA 1 cut(s) 138
BstC8I GCNNGC 5 cut(s) 123, 280, 385, 714, 1434
BstDEI CTNAG 6 cut(s) 126, 492, 786, 1236, 1308, 1323
BstF5I GGATG 6 cut(s) 186, 307, 669, 1096, 1123, 1491
BstFNI CGCG 3 cut(s) 71, 118, 278
BstHHI GCGC 4 cut(s) 40, 118, 278, 772
BstKTI GATC 3 cut(s) 797, 1143, 1258
BstMAI GTCTC 1 cut(s) 95
BstMBI GATC 3 cut(s) 794, 1140, 1255
BstMWI GCNNNNNNNGC 5 cut(s) 103, 122, 127, 570, 1246
BstNI CCWGG 4 cut(s) 76, 206, 451, 1453
BstNSI RCATGY 2 cut(s) 545, 716
BstSCI CCNGG 4 cut(s) 74, 204, 449, 1451
BstSFI CTRYAG 2 cut(s) 474, 568
BstUI CGCG 3 cut(s) 71, 118, 278
BstV1I GCAGC 1 cut(s) 667
BstV2I GAAGAC 1 cut(s) 941
BstX2I RGATCY 1 cut(s) 1140
BstYI RGATCY 1 cut(s) 1140
BsuRI GGCC 4 cut(s) 74, 282, 784, 1069
BtsCI GGATG 6 cut(s) 186, 307, 669, 1096, 1123, 1491
BtsI GCAGTG 1 cut(s) 875
BtsIMutI CAGTG 9 cut(s) 559, 804, 845, 875, 1032, 1194, 1347, 1415, 1468
Cac8I GCNNGC 5 cut(s) 123, 280, 385, 714, 1434
CciI TCATGA 1 cut(s) 919
CfoI GCGC 4 cut(s) 40, 118, 278, 772
Cfr10I RCCGGY 1 cut(s) 106
Cfr13I GGNCC 2 cut(s) 280, 1455
CseI GACGC 3 cut(s) 77, 112, 718
Csp6I GTAC 1 cut(s) 1199
CviAII CATG 5 cut(s) 377, 512, 542, 713, 920
CviQI GTAC 1 cut(s) 1199
DdeI CTNAG 6 cut(s) 126, 492, 786, 1236, 1308, 1323
DpnI GATC 3 cut(s) 796, 1142, 1257
DpnII GATC 3 cut(s) 794, 1140, 1255
DraI TTTAAA 1 cut(s) 1117
DraIII CACNNNGTG 1 cut(s) 46
EaeI YGGCCR 1 cut(s) 72
Eam1104I CTCTTC 2 cut(s) 433, 580
EarI CTCTTC 2 cut(s) 433, 580
EciI GGCGGA 2 cut(s) 133, 1236
Ecl136II GAGCTC 1 cut(s) 130
Eco147I AGGCCT 1 cut(s) 784
Eco24I GRGCYC 1 cut(s) 132
Eco32I GATATC 1 cut(s) 1162
Eco47I GGWCC 1 cut(s) 1455
Eco53kI GAGCTC 1 cut(s) 130
Eco57I CTGAAG 3 cut(s) 414, 666, 953
EcoICRI GAGCTC 1 cut(s) 130
EcoRII CCWGG 4 cut(s) 74, 204, 449, 1451
EcoRV GATATC 1 cut(s) 1162
EcoT38I GRGCYC 1 cut(s) 132
Esp3I CGTCTC 1 cut(s) 95
FaeI CATG 5 cut(s) 380, 515, 545, 716, 923
FaqI GGGAC 1 cut(s) 209
FatI CATG 5 cut(s) 376, 511, 541, 712, 919
FauI CCCGC 2 cut(s) 114, 271
Fnu4HI GCNGC 3 cut(s) 72, 119, 656
FokI GGATG 6 cut(s) 193, 314, 656, 1103, 1110, 1498
FriOI GRGCYC 1 cut(s) 132
Fsp4HI GCNGC 3 cut(s) 72, 119, 656
FspBI CTAG 4 cut(s) 188, 1023, 1149, 1507
GlaI GCGC 4 cut(s) 39, 117, 277, 771
GluI GCNGC 3 cut(s) 72, 119, 656
GsuI CTGGAG 2 cut(s) 600, 1274
HaeIII GGCC 4 cut(s) 74, 282, 784, 1069
HapII CCGG 1 cut(s) 107
HgaI GACGC 3 cut(s) 77, 112, 718
HhaI GCGC 4 cut(s) 40, 118, 278, 772
Hin1I GRCGYC 1 cut(s) 104
Hin1II CATG 5 cut(s) 380, 515, 545, 716, 923
Hin6I GCGC 4 cut(s) 38, 116, 276, 770
HinP1I GCGC 4 cut(s) 38, 116, 276, 770
HincII GTYRAC 2 cut(s) 396, 485
HindII GTYRAC 2 cut(s) 396, 485
HinfI GANTC 5 cut(s) 140, 287, 1243, 1349, 1500
HpaII CCGG 1 cut(s) 107
HphI GGTGA 1 cut(s) 920
Hpy166II GTNNAC 5 cut(s) 33, 49, 396, 485, 845
Hpy188I TCNGA 4 cut(s) 534, 903, 1221, 1285
Hpy188III TCNNGA 5 cut(s) 525, 579, 920, 1001, 1174
Hpy8I GTNNAC 5 cut(s) 33, 49, 396, 485, 845
HpyAV CCTTC 5 cut(s) 171, 317, 1000, 1059, 1339
HpyCH4III ACNGT 5 cut(s) 554, 970, 1036, 1198, 1419
HpyCH4V TGCA 5 cut(s) 296, 355, 655, 955, 1040
HpyF10VI GCNNNNNNNGC 5 cut(s) 103, 122, 127, 570, 1246
HpyF3I CTNAG 6 cut(s) 126, 492, 786, 1236, 1308, 1323
Hsp92I GRCGYC 1 cut(s) 104
Hsp92II CATG 5 cut(s) 380, 515, 545, 716, 923
HspAI GCGC 4 cut(s) 38, 116, 276, 770
Kzo9I GATC 3 cut(s) 794, 1140, 1255
LguI GCTCTTC 1 cut(s) 580
LmnI GCTCC 5 cut(s) 22, 380, 826, 874, 894
Lsp1109I GCAGC 1 cut(s) 667
MaeI CTAG 4 cut(s) 188, 1023, 1149, 1507
MaeIII GTNAC 3 cut(s) 172, 623, 637
MalI GATC 3 cut(s) 796, 1142, 1257
MboI GATC 3 cut(s) 794, 1140, 1255
MboII GAAGA 5 cut(s) 20, 420, 567, 946, 1404
MflI RGATCY 1 cut(s) 1140
MhlI GDGCHC 2 cut(s) 132, 899
MlyI GAGTC 2 cut(s) 1343, 1509
MmeI TCCRAC 3 cut(s) 783, 993, 1402
MroXI GAANNNNTTC 1 cut(s) 1373
MseI TTAA 5 cut(s) 1083, 1116, 1131, 1212, 1277
MslI CAYNNNNRTG 2 cut(s) 516, 993
MspCI CTTAAG 1 cut(s) 1082
MspI CCGG 1 cut(s) 107
MspR9I CCNGG 4 cut(s) 76, 206, 451, 1453
MvaI CCWGG 4 cut(s) 76, 206, 451, 1453
MvnI CGCG 3 cut(s) 71, 118, 278
MwoI GCNNNNNNNGC 5 cut(s) 103, 122, 127, 570, 1246
NdeII GATC 3 cut(s) 794, 1140, 1255
NlaIII CATG 5 cut(s) 380, 515, 545, 716, 923
NlaIV GGNNCC 4 cut(s) 523, 681, 870, 1450
NmeAIII GCCGAG 1 cut(s) 1095
NmuCI GTSAC 2 cut(s) 172, 623
NspI RCATGY 2 cut(s) 545, 716
NspV TTCGAA 1 cut(s) 138
PaeI GCATGC 1 cut(s) 716
PagI TCATGA 1 cut(s) 919
PceI AGGCCT 1 cut(s) 784
PciI ACATGT 1 cut(s) 541
PciSI GCTCTTC 1 cut(s) 580
PdmI GAANNNNTTC 1 cut(s) 1373
PfeI GAWTC 3 cut(s) 140, 287, 1243
PkrI GCNGC 3 cut(s) 73, 120, 657
PleI GAGTC 2 cut(s) 1343, 1508
PpsI GAGTC 2 cut(s) 1343, 1508
PscI ACATGT 1 cut(s) 541
Psp124BI GAGCTC 1 cut(s) 132
Psp6I CCWGG 4 cut(s) 74, 204, 449, 1451
PspGI CCWGG 4 cut(s) 74, 204, 449, 1451
PspN4I GGNNCC 4 cut(s) 523, 681, 870, 1450
PspPI GGNCC 2 cut(s) 280, 1455
PsuI RGATCY 1 cut(s) 1140
RsaI GTAC 1 cut(s) 1200
RsaNI GTAC 1 cut(s) 1199
RseI CAYNNNNRTG 2 cut(s) 516, 993
SacI GAGCTC 1 cut(s) 132
SapI GCTCTTC 1 cut(s) 580
SaqAI TTAA 5 cut(s) 1083, 1116, 1131, 1212, 1277
SatI GCNGC 3 cut(s) 72, 119, 656
Sau3AI GATC 3 cut(s) 794, 1140, 1255
Sau96I GGNCC 2 cut(s) 280, 1455
SchI GAGTC 2 cut(s) 1343, 1509
ScrFI CCNGG 4 cut(s) 76, 206, 451, 1453
SduI GDGCHC 2 cut(s) 132, 899
SfcI CTRYAG 2 cut(s) 474, 568
SfuI TTCGAA 1 cut(s) 138
SgrAI CRCCGGYG 1 cut(s) 106
SinI GGWCC 1 cut(s) 1455
SmiMI CAYNNNNRTG 2 cut(s) 516, 993
SmlI CTYRAG 2 cut(s) 591, 1082
SmoI CTYRAG 2 cut(s) 591, 1082
SphI GCATGC 1 cut(s) 716
SseBI AGGCCT 1 cut(s) 784
SsiI CCGC 8 cut(s) 71, 118, 121, 144, 278, 312, 1247, 1504
SspMI CTAG 4 cut(s) 188, 1023, 1149, 1507
SstI GAGCTC 1 cut(s) 132
StuI AGGCCT 1 cut(s) 784
StyD4I CCNGG 4 cut(s) 74, 204, 449, 1451
TaaI ACNGT 5 cut(s) 554, 970, 1036, 1198, 1419
TaqI TCGA 3 cut(s) 138, 693, 826
TauI GCSGC 2 cut(s) 74, 121
TfiI GAWTC 3 cut(s) 140, 287, 1243
Tru1I TTAA 5 cut(s) 1083, 1116, 1131, 1212, 1277
Tru9I TTAA 5 cut(s) 1083, 1116, 1131, 1212, 1277
TscAI CASTG 9 cut(s) 559, 804, 852, 882, 1039, 1201, 1347, 1422, 1468
TseFI GTSAC 2 cut(s) 172, 623
TseI GCWGC 1 cut(s) 655
Tsp45I GTSAC 2 cut(s) 172, 623
TspDTI ATGAA 5 cut(s) 344, 482, 658, 908, 936
TspRI CASTG 9 cut(s) 559, 804, 852, 882, 1039, 1201, 1347, 1422, 1468
Vha464I CTTAAG 1 cut(s) 1082
VpaK11BI GGWCC 1 cut(s) 1455
XapI RAATTY 6 cut(s) 830, 858, 914, 923, 1112, 1208
XceI RCATGY 2 cut(s) 545, 716
XcmI CCANNNNNNNNNTGG 1 cut(s) 1201
XmnI GAANNNNTTC 1 cut(s) 1373
XspI CTAG 4 cut(s) 188, 1023, 1149, 1507
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.