Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005365.1

Orthogroup ID

OG0013649

Physical Location & Seq

Genomic Coordinates Forward (+)

12132 .. 13565

Gene Structure 1434 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005365.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

atggaattgacattgggagttcaacaaggatcaatgtcactcacacaaatattgctaccggagacgattgtattgccgttggcgaaggcaccaaccagctttggtggaaagcccggctctgatattacagtgggtttggcaaaggcatggagagatgcatgtgcatcagagtcgtcaagtaaggttgttgttccaagcggttcgtacaagttgaaagaagcaacattcgaaggtccttgcaaggctccgattgaggttaagatccaaggaacactgcaggctccaaaagaccgaagttcagatacttgggttgcatttagctccattgacatgctcaccttatggggtggtggaacttttgacggccaaggagcacatggttcgaaagacggtgatatcagagatatcaggttctcctccatcaccaattccataattatggacataacttcactagataacgattgtattgccgttggcgaaggcaccaaccagctcctagtgaccgacgttacttgcggaccaggccacggcataagcataggaagtcttggatataagcctgatgaaaagcccgtgtttggagtcacaatcatgaactgcacccttgttggcacaaccaatggcgcgagaataaagacatggcctgattctcctggtgtaagtagtgcctcggatatcctctttgaggatattgtaatggtgaatgtcgagaatcctatcatcattgaccaaaactactgctcgggagatgaggatagatgcaaacagaatactccgtcggaagttcagatcagtaatgtgaggttcaagaacatcaaaggctcgtctgcaactccaattgctgtaaacctcgcatgtagtccgatcgtgccatgccagaatgtggaactggaagatattgatcttacatacaatggcaacgaaggctctctttcgtctcaatgtttcaatgtcaggcccagaaccactcgcgtcggaaaacctcttgcttgtgctaatctaccaggcttaccatcgggtgattcgccgcctccaccaccgttatatgattaccattcacctatgatatacactggcagcccagacaataacagttgttggcggccaagaccaccggtcatggggtatctactaatttcgggtctgggtgtgtggctgttgcaagagttgctacaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Glyco_hydro_28

Protein Analysis

393

Amino Acids

41.85

Weight (kDa)

4.77

Isoelectric Point (pI)

38.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013649)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g41700
malus_domestica	MD16G1223700.v1.1
rosa_chinensis	RchiOBHm_Chr5g0074791
rosa_laevigata	RLG00000036505
rosa_multiflora	Rmu_sc0000909.1_g000008 Rmu_sc0001066.1_g000014 Rmu_sc0005365.1_g000003 Rmu_sc0005365.1_g000004
rosa_roxburghii	Rroxscaffold_1G00006780 Rroxscaffold_1G00006790
rosa_rugosa	Rorug05G0433800
rosa_samantha	Rh5AG491700 Rh5BG513100 Rh5CG536800 Rh5DG525200 Rh6BG029400 Rh6CG029700
rosa_wichuraiana	Rw5G045540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	88, 485
AccB7I	CCANNNNNTGG	1 cut(s)	886
AccII	CGCG	2 cut(s)	629, 975
AciI	CCGC	4 cut(s)	198, 519, 1031, 1105
AclWI	GGATC	2 cut(s)	37, 256
AcoI	YGGCCR	2 cut(s)	364, 1106
AfaI	GTAC	1 cut(s)	206
AfiI	CCNNNNNNNGG	5 cut(s)	530, 581, 688, 886, 1124
AgeI	ACCGGT	1 cut(s)	1117
AgsI	TTSAA	4 cut(s)	23, 214, 811, 952
AhdI	GACNNNNNGTC	1 cut(s)	1118
AjnI	CCWGG	3 cut(s)	523, 655, 1006
AluBI	AGCT	3 cut(s)	99, 321, 496
AluI	AGCT	3 cut(s)	99, 321, 496
Alw21I	GWGCWC	1 cut(s)	376
Alw26I	GTCTC	2 cut(s)	56, 945
AlwI	GGATC	2 cut(s)	37, 256
Ama87I	CYCGRG	1 cut(s)	745
AoxI	GGCC	5 cut(s)	364, 526, 644, 959, 1106
ApeKI	GCWGC	1 cut(s)	1080
AsiGI	ACCGGT	1 cut(s)	1117
AspLEI	GCGC	1 cut(s)	629
AspS9I	GGNCC	3 cut(s)	233, 521, 960
AsuC2I	CCSGG	1 cut(s)	114
AsuHPI	GGTGA	6 cut(s)	328, 404, 415, 715, 1034, 1053
AsuII	TTCGAA	2 cut(s)	228, 383
AvaI	CYCGRG	1 cut(s)	745
AvaII	GGWCC	2 cut(s)	233, 521
BaeI	ACNNNNGTAYC	2 cut(s)	294, 327
BanI	GGYRCC	2 cut(s)	88, 485
BarI	GAAGNNNNNNTAC	2 cut(s)	286, 318
Bbv12I	GWGCWC	1 cut(s)	376
BbvI	GCAGC	1 cut(s)	1092
BccI	CCATC	2 cut(s)	428, 1024
BceAI	ACGGC	4 cut(s)	61, 379, 458, 547
BcgI	CGANNNNNNTGC	8 cut(s)	55, 89, 153, 187, 363, 397, 452, 486
BciT130I	CCWGG	3 cut(s)	525, 657, 1008
BcnI	CCSGG	1 cut(s)	114
BcoDI	GTCTC	2 cut(s)	56, 945
BfaI	CTAG	2 cut(s)	455, 500
BfmI	CTRYAG	1 cut(s)	275
BisI	GCNGC	3 cut(s)	1031, 1081, 1106
BlsI	GCNGC	3 cut(s)	1032, 1082, 1107
Bme1390I	CCNGG	4 cut(s)	114, 525, 657, 1008
Bme18I	GGWCC	2 cut(s)	233, 521
BmeRI	GACNNNNNGTC	1 cut(s)	1118
BmeT110I	CYCGRG	1 cut(s)	745
BmgT120I	GGNCC	3 cut(s)	233, 521, 960
BmiI	GGNNCC	4 cut(s)	90, 246, 282, 487
BmrFI	CCNGG	4 cut(s)	114, 525, 657, 1008
BmsI	GCATC	3 cut(s)	145, 173, 752
Bpu14I	TTCGAA	2 cut(s)	228, 383
BpuMI	CCSGG	1 cut(s)	114
BsaBI	GATNNNNATC	1 cut(s)	903
BsaJI	CCNNGG	4 cut(s)	265, 367, 529, 672
BsaWI	WCCGGW	2 cut(s)	58, 1117
Bsc4I	CCNNNNNNNGG	5 cut(s)	530, 581, 688, 886, 1124
Bse118I	RCCGGY	1 cut(s)	1117
Bse1I	ACTGG	2 cut(s)	897, 1081
Bse8I	GATNNNNATC	1 cut(s)	903
BseBI	CCWGG	3 cut(s)	525, 657, 1008
BseDI	CCNNGG	4 cut(s)	265, 367, 529, 672
BseJI	GATNNNNATC	1 cut(s)	903
BseLI	CCNNNNNNNGG	5 cut(s)	530, 581, 688, 886, 1124
BseNI	ACTGG	2 cut(s)	897, 1081
BseRI	GAGGAG	1 cut(s)	406
BseXI	GCAGC	1 cut(s)	1092
BsgI	GTGCAG	1 cut(s)	586
Bsh1236I	CGCG	2 cut(s)	629, 975
Bsh1285I	CGRYCG	1 cut(s)	870
BshFI	GGCC	5 cut(s)	366, 528, 646, 961, 1108
BshNI	GGYRCC	2 cut(s)	88, 485
BshTI	ACCGGT	1 cut(s)	1117
BsiEI	CGRYCG	1 cut(s)	870
BsiHKAI	GWGCWC	1 cut(s)	376
BsiHKCI	CYCGRG	1 cut(s)	745
BsiSI	CCGG	3 cut(s)	59, 114, 1118
BslI	CCNNNNNNNGG	5 cut(s)	530, 581, 688, 886, 1124
BsmAI	GTCTC	2 cut(s)	56, 945
BsmBI	CGTCTC	2 cut(s)	56, 945
BsnI	GGCC	5 cut(s)	366, 528, 646, 961, 1108
BsoBI	CYCGRG	1 cut(s)	745
Bsp119I	TTCGAA	2 cut(s)	228, 383
Bsp1286I	GDGCHC	1 cut(s)	376
Bsp143I	GATC	5 cut(s)	29, 261, 792, 867, 904
BspACI	CCGC	4 cut(s)	198, 519, 1031, 1105
BspANI	GGCC	5 cut(s)	366, 528, 646, 961, 1108
BspFNI	CGCG	2 cut(s)	629, 975
BspHI	TCATGA	1 cut(s)	594
BspLI	GGNNCC	4 cut(s)	90, 246, 282, 487
BspMAI	CTGCAG	1 cut(s)	279
BspPI	GGATC	2 cut(s)	37, 256
BspT104I	TTCGAA	2 cut(s)	228, 383
BspT107I	GGYRCC	2 cut(s)	88, 485
BsrFI	RCCGGY	1 cut(s)	1117
BsrI	ACTGG	2 cut(s)	897, 1081
BssAI	RCCGGY	1 cut(s)	1117
BssECI	CCNNGG	4 cut(s)	265, 367, 529, 672
BssMI	GATC	5 cut(s)	29, 261, 792, 867, 904
BssT1I	CCWWGG	2 cut(s)	265, 367
Bst2UI	CCWGG	3 cut(s)	525, 657, 1008
Bst4CI	ACNGT	4 cut(s)	130, 392, 1044, 1097
BstAPI	GCANNNNNTGC	1 cut(s)	1171
BstBI	TTCGAA	2 cut(s)	228, 383
BstC8I	GCNNGC	1 cut(s)	279
BstDSI	CCRYGG	1 cut(s)	529
BstENI	CCTNNNNNAGG	1 cut(s)	686
BstFNI	CGCG	2 cut(s)	629, 975
BstHHI	GCGC	1 cut(s)	629
BstKTI	GATC	5 cut(s)	32, 264, 795, 870, 907
BstMAI	GTCTC	2 cut(s)	56, 945
BstMBI	GATC	5 cut(s)	29, 261, 792, 867, 904
BstMCI	CGRYCG	1 cut(s)	870
BstMWI	GCNNNNNNNGC	3 cut(s)	525, 927, 1171
BstNI	CCWGG	3 cut(s)	525, 657, 1008
BstNSI	RCATGY	3 cut(s)	162, 334, 861
BstSCI	CCNGG	4 cut(s)	112, 523, 655, 1006
BstSFI	CTRYAG	1 cut(s)	275
BstUI	CGCG	2 cut(s)	629, 975
BstV1I	GCAGC	1 cut(s)	1092
BstX2I	RGATCY	1 cut(s)	261
BstXI	CCANNNNNNTGG	1 cut(s)	439
BstYI	RGATCY	1 cut(s)	261
BsuRI	GGCC	5 cut(s)	366, 528, 646, 961, 1108
BtgI	CCRYGG	1 cut(s)	529
BtsI	GCAGTG	1 cut(s)	272
BtsIMutI	CAGTG	3 cut(s)	135, 272, 1074
Cac8I	GCNNGC	1 cut(s)	279
CciI	TCATGA	1 cut(s)	594
CfoI	GCGC	1 cut(s)	629
Cfr10I	RCCGGY	1 cut(s)	1117
Cfr13I	GGNCC	3 cut(s)	233, 521, 960
CseI	GACGC	1 cut(s)	964
Csp6I	GTAC	1 cut(s)	205
CspAI	ACCGGT	1 cut(s)	1117
CviAII	CATG	9 cut(s)	147, 159, 331, 377, 595, 642, 858, 876, 1123
CviQI	GTAC	1 cut(s)	205
DpnI	GATC	5 cut(s)	31, 263, 794, 869, 906
DpnII	GATC	5 cut(s)	29, 261, 792, 867, 904
DriI	GACNNNNNGTC	1 cut(s)	1118
EaeI	YGGCCR	2 cut(s)	364, 1106
Eam1105I	GACNNNNNGTC	1 cut(s)	1118
Eco130I	CCWWGG	2 cut(s)	265, 367
Eco32I	GATATC	3 cut(s)	397, 406, 679
Eco47I	GGWCC	2 cut(s)	233, 521
Eco88I	CYCGRG	1 cut(s)	745
EcoNI	CCTNNNNNAGG	1 cut(s)	686
EcoO109I	RGGNCCY	1 cut(s)	233
EcoRII	CCWGG	3 cut(s)	523, 655, 1006
EcoRV	GATATC	3 cut(s)	397, 406, 679
EcoT14I	CCWWGG	2 cut(s)	265, 367
EcoT22I	ATGCAT	1 cut(s)	160
ErhI	CCWWGG	2 cut(s)	265, 367
Esp3I	CGTCTC	2 cut(s)	56, 945
FaeI	CATG	9 cut(s)	150, 162, 334, 380, 598, 645, 861, 879, 1126
FalI	AAGNNNNNCTT	2 cut(s)	918, 950
FatI	CATG	9 cut(s)	146, 158, 330, 376, 594, 641, 857, 875, 1122
Fnu4HI	GCNGC	3 cut(s)	1031, 1081, 1106
Fsp4HI	GCNGC	3 cut(s)	1031, 1081, 1106
FspBI	CTAG	2 cut(s)	455, 500
GlaI	GCGC	1 cut(s)	628
GluI	GCNGC	3 cut(s)	1031, 1081, 1106
HaeIII	GGCC	5 cut(s)	366, 528, 646, 961, 1108
HapII	CCGG	3 cut(s)	59, 114, 1118
HgaI	GACGC	1 cut(s)	964
HhaI	GCGC	1 cut(s)	629
Hin1II	CATG	9 cut(s)	150, 162, 334, 380, 598, 645, 861, 879, 1126
Hin6I	GCGC	1 cut(s)	627
HinP1I	GCGC	1 cut(s)	627
HinfI	GANTC	5 cut(s)	170, 585, 650, 715, 1025
HpaII	CCGG	3 cut(s)	59, 114, 1118
HphI	GGTGA	6 cut(s)	328, 404, 415, 715, 1034, 1053
Hpy166II	GTNNAC	1 cut(s)	850
Hpy188III	TCNNGA	4 cut(s)	595, 712, 747, 811
Hpy8I	GTNNAC	1 cut(s)	850
Hpy99I	CGWCG	3 cut(s)	512, 784, 980
HpyAV	CCTTC	4 cut(s)	79, 224, 476, 920
HpyCH4III	ACNGT	4 cut(s)	130, 392, 1044, 1097
HpyCH4IV	ACGT	1 cut(s)	510
HpyCH4V	TGCA	9 cut(s)	158, 164, 240, 277, 314, 603, 765, 833, 1165
HpyF10VI	GCNNNNNNNGC	3 cut(s)	525, 927, 1171
HpySE526I	ACGT	1 cut(s)	510
Hsp92II	CATG	9 cut(s)	150, 162, 334, 380, 598, 645, 861, 879, 1126
HspAI	GCGC	1 cut(s)	627
Kzo9I	GATC	5 cut(s)	29, 261, 792, 867, 904
LmnI	GCTCC	5 cut(s)	250, 286, 326, 371, 501
Lsp1109I	GCAGC	1 cut(s)	1092
LweI	GCATC	3 cut(s)	145, 173, 752
MaeI	CTAG	2 cut(s)	455, 500
MaeII	ACGT	1 cut(s)	510
MaeIII	GTNAC	4 cut(s)	36, 502, 511, 586
MalI	GATC	5 cut(s)	31, 263, 794, 869, 906
MboI	GATC	5 cut(s)	29, 261, 792, 867, 904
MboII	GAAGA	1 cut(s)	908
MfeI	CAATTG	1 cut(s)	840
MflI	RGATCY	1 cut(s)	261
MhlI	GDGCHC	1 cut(s)	376
MluCI	AATT	5 cut(s)	5, 427, 435, 840, 1137
MlyI	GAGTC	2 cut(s)	179, 594
MmeI	TCCRAC	2 cut(s)	762, 958
Mph1103I	ATGCAT	1 cut(s)	160
MseI	TTAA	1 cut(s)	258
MslI	CAYNNNNRTG	3 cut(s)	329, 437, 593
MspI	CCGG	3 cut(s)	59, 114, 1118
MspR9I	CCNGG	4 cut(s)	114, 525, 657, 1008
MunI	CAATTG	1 cut(s)	840
MvaI	CCWGG	3 cut(s)	525, 657, 1008
MvnI	CGCG	2 cut(s)	629, 975
MwoI	GCNNNNNNNGC	3 cut(s)	525, 927, 1171
NciI	CCSGG	1 cut(s)	114
NdeII	GATC	5 cut(s)	29, 261, 792, 867, 904
NlaIII	CATG	9 cut(s)	150, 162, 334, 380, 598, 645, 861, 879, 1126
NlaIV	GGNNCC	4 cut(s)	90, 246, 282, 487
NmuCI	GTSAC	3 cut(s)	36, 502, 586
NsiI	ATGCAT	1 cut(s)	160
NspI	RCATGY	3 cut(s)	162, 334, 861
NspV	TTCGAA	2 cut(s)	228, 383
PagI	TCATGA	1 cut(s)	594
PfeI	GAWTC	3 cut(s)	650, 715, 1025
PflMI	CCANNNNNTGG	1 cut(s)	886
PinAI	ACCGGT	1 cut(s)	1117
PkrI	GCNGC	3 cut(s)	1032, 1082, 1107
Ple19I	CGATCG	1 cut(s)	870
PleI	GAGTC	2 cut(s)	178, 593
PpsI	GAGTC	2 cut(s)	178, 593
PpuMI	RGGWCCY	1 cut(s)	233
Psp5II	RGGWCCY	1 cut(s)	233
Psp6I	CCWGG	3 cut(s)	523, 655, 1006
PspGI	CCWGG	3 cut(s)	523, 655, 1006
PspN4I	GGNNCC	4 cut(s)	90, 246, 282, 487
PspPI	GGNCC	3 cut(s)	233, 521, 960
PspPPI	RGGWCCY	1 cut(s)	233
PstI	CTGCAG	1 cut(s)	279
PsuI	RGATCY	1 cut(s)	261
PvuI	CGATCG	1 cut(s)	870
RsaI	GTAC	1 cut(s)	206
RsaNI	GTAC	1 cut(s)	205
RseI	CAYNNNNRTG	3 cut(s)	329, 437, 593
SaqAI	TTAA	1 cut(s)	258
SatI	GCNGC	3 cut(s)	1031, 1081, 1106
Sau3AI	GATC	5 cut(s)	29, 261, 792, 867, 904
Sau96I	GGNCC	3 cut(s)	233, 521, 960
SchI	GAGTC	2 cut(s)	179, 594
ScrFI	CCNGG	4 cut(s)	114, 525, 657, 1008
SduI	GDGCHC	1 cut(s)	376
SfaNI	GCATC	3 cut(s)	145, 173, 752
SfcI	CTRYAG	1 cut(s)	275
SfuI	TTCGAA	2 cut(s)	228, 383
SinI	GGWCC	2 cut(s)	233, 521
SmiMI	CAYNNNNRTG	3 cut(s)	329, 437, 593
Sse9I	AATT	5 cut(s)	5, 427, 435, 840, 1137
SsiI	CCGC	4 cut(s)	198, 519, 1031, 1105
SspI	AATATT	1 cut(s)	51
SspMI	CTAG	2 cut(s)	455, 500
StyD4I	CCNGG	4 cut(s)	112, 523, 655, 1006
StyI	CCWWGG	2 cut(s)	265, 367
TaaI	ACNGT	4 cut(s)	130, 392, 1044, 1097
TaiI	ACGT	1 cut(s)	513
TaqI	TCGA	3 cut(s)	228, 383, 711
TaqII	GACCGA	2 cut(s)	306, 521
TasI	AATT	5 cut(s)	5, 427, 435, 840, 1137
TauI	GCSGC	2 cut(s)	1033, 1108
TfiI	GAWTC	3 cut(s)	650, 715, 1025
Tru1I	TTAA	1 cut(s)	258
Tru9I	TTAA	1 cut(s)	258
TscAI	CASTG	3 cut(s)	135, 279, 1081
TseFI	GTSAC	3 cut(s)	36, 502, 586
TseI	GCWGC	1 cut(s)	1080
Tsp45I	GTSAC	3 cut(s)	36, 502, 586
TspDTI	ATGAA	2 cut(s)	582, 611
TspGWI	ACGGA	1 cut(s)	768
TspRI	CASTG	3 cut(s)	135, 279, 1081
Van91I	CCANNNNNTGG	1 cut(s)	886
VpaK11BI	GGWCC	2 cut(s)	233, 521
XagI	CCTNNNNNAGG	1 cut(s)	686
XceI	RCATGY	3 cut(s)	162, 334, 861
XcmI	CCANNNNNNNNNTGG	1 cut(s)	374
XspI	CTAG	2 cut(s)	455, 500
Zsp2I	ATGCAT	1 cut(s)	160

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.