Rh6CG029700

Exopolygalacturonase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0013649
Physical Location & Seq
Reverse (-)
2663148 .. 2666360
3213 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG029700.1

Sequence Viewer

Length: 468 bp
ATGGATCAGAAATTAATGAACGTCTTGACAATATTTTTGTTCTTAATGTTGGCGTTTACAACTAAAATTCAATCCTCTGTTGTCTTTGACGTGACAAGTGCAAAATATGGGGGAAAGCCAAACTCAGACATTACAAAGGCTTTGCTGAATGCTTGGACTGATGCATGTGCATCACCGAGGGAGAGTAAAGTTCTTGTTCCAAAAGGCACCTACGGATTAAAAGGAGCAATTTTCAGAGGTCATTGCAAGGCTTCTATTGAGCTTCAGGTCCGAGGCACATTGCAGGCTCCAAAAGACACTAGCCAAGTCACATCACCGGATACTTGGGTTGGTTTTCGGTACCTTAATAGGCTCACCTTGTCAGGTGGTGGAACTTTTGATGGCCGCGGAGCACTCTCTTGGAAACAGAACGACTGTAACGAAAACAAAAACTGCAAATCTCGGGTCGTGCTTCTGGCAGGAGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko00040 ko01100 map00040 map01100
Pfam Domains
Protein Families
Glyco_hydro_28

Protein Analysis

155

Amino Acids

16.87

Weight (kDa)

9.62

Isoelectric Point (pI)

24.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_28 PF00295 56 - 147 2.3e-13 Glycosyl hydrolases family 28
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 339
AccB1I GGYRCC 2 cut(s) 206, 339
AccII CGCG 1 cut(s) 387
AciI CCGC 2 cut(s) 385, 387
AclWI GGATC 1 cut(s) 12
AcoI YGGCCR 1 cut(s) 382
AcsI RAATTY 1 cut(s) 66
AcuI CTGAAG 1 cut(s) 248
AfaI GTAC 1 cut(s) 341
AgsI TTSAA 1 cut(s) 71
AjiI CACGTC 1 cut(s) 91
AluBI AGCT 1 cut(s) 262
AluI AGCT 1 cut(s) 262
Alw21I GWGCWC 1 cut(s) 394
AlwI GGATC 1 cut(s) 12
Ama87I CYCGRG 1 cut(s) 441
AoxI GGCC 1 cut(s) 382
ApoI RAATTY 1 cut(s) 66
ArsI GACNNNNNNTTYG 4 cut(s) 19, 51, 429, 461
AseI ATTAAT 1 cut(s) 14
Asp718I GGTACC 1 cut(s) 339
AspS9I GGNCC 1 cut(s) 268
AsuHPI GGTGA 3 cut(s) 165, 306, 346
AvaI CYCGRG 1 cut(s) 441
AvaII GGWCC 1 cut(s) 268
BaeI ACNNNNGTAYC 2 cut(s) 312, 345
BanI GGYRCC 2 cut(s) 206, 339
Bbv12I GWGCWC 1 cut(s) 394
BccI CCATC 1 cut(s) 374
BciVI GTATCC 1 cut(s) 313
BfaI CTAG 1 cut(s) 300
BfuI GTATCC 1 cut(s) 313
BisI GCNGC 1 cut(s) 385
BlsI GCNGC 1 cut(s) 386
Bme18I GGWCC 1 cut(s) 268
BmeT110I CYCGRG 1 cut(s) 441
BmgBI CACGTC 1 cut(s) 91
BmgT120I GGNCC 1 cut(s) 268
BmiI GGNNCC 3 cut(s) 208, 288, 341
BmsI GCATC 2 cut(s) 151, 179
BsaJI CCNNGG 3 cut(s) 176, 271, 385
BsaWI WCCGGW 1 cut(s) 316
Bse3DI GCAATG 2 cut(s) 241, 278
BseDI CCNNGG 3 cut(s) 176, 271, 385
BseMI GCAATG 2 cut(s) 241, 278
BseMII CTCAG 1 cut(s) 138
Bsh1236I CGCG 1 cut(s) 387
BshFI GGCC 1 cut(s) 384
BshNI GGYRCC 2 cut(s) 206, 339
BsiHKAI GWGCWC 1 cut(s) 394
BsiHKCI CYCGRG 1 cut(s) 441
BsiSI CCGG 1 cut(s) 317
BsmI GAATGC 1 cut(s) 154
BsnI GGCC 1 cut(s) 384
BsoBI CYCGRG 1 cut(s) 441
Bsp1286I GDGCHC 1 cut(s) 394
Bsp143I GATC 1 cut(s) 4
BspACI CCGC 2 cut(s) 385, 387
BspANI GGCC 1 cut(s) 384
BspCNI CTCAG 1 cut(s) 137
BspFNI CGCG 1 cut(s) 387
BspLI GGNNCC 3 cut(s) 208, 288, 341
BspPI GGATC 1 cut(s) 12
BspT107I GGYRCC 2 cut(s) 206, 339
BsrDI GCAATG 2 cut(s) 241, 278
BssECI CCNNGG 3 cut(s) 176, 271, 385
BssMI GATC 1 cut(s) 4
Bst4CI ACNGT 1 cut(s) 416
BstC8I GCNNGC 1 cut(s) 285
BstDEI CTNAG 1 cut(s) 124
BstDSI CCRYGG 1 cut(s) 385
BstFNI CGCG 1 cut(s) 387
BstKTI GATC 1 cut(s) 7
BstMBI GATC 1 cut(s) 4
BstNSI RCATGY 1 cut(s) 168
BstUI CGCG 1 cut(s) 387
BsuI GTATCC 1 cut(s) 313
BsuRI GGCC 1 cut(s) 384
BtgI CCRYGG 1 cut(s) 385
BtrI CACGTC 1 cut(s) 91
Cac8I GCNNGC 1 cut(s) 285
Cfr13I GGNCC 1 cut(s) 268
Cfr42I CCGCGG 1 cut(s) 388
Csp6I GTAC 1 cut(s) 340
CviAII CATG 1 cut(s) 165
CviJI RGCY 8 cut(s) 118, 140, 251, 262, 287, 303, 352, 384
CviKI_1 RGCY 8 cut(s) 118, 140, 251, 262, 287, 303, 352, 384
CviQI GTAC 1 cut(s) 340
DdeI CTNAG 1 cut(s) 124
DpnI GATC 1 cut(s) 6
DpnII GATC 1 cut(s) 4
EaeI YGGCCR 1 cut(s) 382
Eco47I GGWCC 1 cut(s) 268
Eco57I CTGAAG 1 cut(s) 248
Eco88I CYCGRG 1 cut(s) 441
EcoT22I ATGCAT 1 cut(s) 166
FaeI CATG 1 cut(s) 168
FaiI YATR 3 cut(s) 108, 166, 466
FatI CATG 1 cut(s) 164
Fnu4HI GCNGC 1 cut(s) 385
Fsp4HI GCNGC 1 cut(s) 385
FspBI CTAG 1 cut(s) 300
GluI GCNGC 1 cut(s) 385
HaeIII GGCC 1 cut(s) 384
HapII CCGG 1 cut(s) 317
Hin1II CATG 1 cut(s) 168
HpaII CCGG 1 cut(s) 317
HphI GGTGA 3 cut(s) 165, 306, 346
Hpy166II GTNNAC 1 cut(s) 57
Hpy188I TCNGA 4 cut(s) 9, 127, 236, 272
Hpy188III TCNNGA 1 cut(s) 25
Hpy8I GTNNAC 1 cut(s) 57
HpyCH4III ACNGT 1 cut(s) 416
HpyCH4IV ACGT 2 cut(s) 21, 90
HpyCH4V TGCA 6 cut(s) 101, 164, 170, 246, 283, 435
HpyF3I CTNAG 1 cut(s) 124
HpySE526I ACGT 2 cut(s) 21, 90
Hsp92II CATG 1 cut(s) 168
KpnI GGTACC 1 cut(s) 343
KspI CCGCGG 1 cut(s) 388
Kzo9I GATC 1 cut(s) 4
LmnI GCTCC 4 cut(s) 224, 292, 389, 461
LpnPI CCDG 6 cut(s) 251, 269, 330, 348, 440, 444
LweI GCATC 2 cut(s) 151, 179
MaeI CTAG 1 cut(s) 300
MaeII ACGT 2 cut(s) 21, 90
MaeIII GTNAC 3 cut(s) 91, 307, 416
MalI GATC 1 cut(s) 6
MboI GATC 1 cut(s) 4
MhlI GDGCHC 1 cut(s) 394
MluCI AATT 3 cut(s) 11, 66, 228
MnlI CCTC 4 cut(s) 85, 171, 230, 266
Mph1103I ATGCAT 1 cut(s) 166
MseI TTAA 4 cut(s) 14, 44, 218, 345
MspA1I CMGCKG 1 cut(s) 387
MspI CCGG 1 cut(s) 317
Mva1269I GAATGC 1 cut(s) 154
MvnI CGCG 1 cut(s) 387
NdeII GATC 1 cut(s) 4
NlaIII CATG 1 cut(s) 168
NlaIV GGNNCC 3 cut(s) 208, 288, 341
NmuCI GTSAC 2 cut(s) 91, 307
NsiI ATGCAT 1 cut(s) 166
NspI RCATGY 1 cut(s) 168
PcsI WCGNNNNNNNCGW 1 cut(s) 417
PctI GAATGC 1 cut(s) 154
PkrI GCNGC 1 cut(s) 386
PshBI ATTAAT 1 cut(s) 14
PspN4I GGNNCC 3 cut(s) 208, 288, 341
PspPI GGNCC 1 cut(s) 268
RsaI GTAC 1 cut(s) 341
RsaNI GTAC 1 cut(s) 340
SacII CCGCGG 1 cut(s) 388
SaqAI TTAA 4 cut(s) 14, 44, 218, 345
SatI GCNGC 1 cut(s) 385
Sau3AI GATC 1 cut(s) 4
Sau96I GGNCC 1 cut(s) 268
SduI GDGCHC 1 cut(s) 394
SetI ASST 9 cut(s) 24, 93, 212, 241, 264, 270, 345, 359, 367
SfaNI GCATC 2 cut(s) 151, 179
Sfr303I CCGCGG 1 cut(s) 388
SgrBI CCGCGG 1 cut(s) 388
SinI GGWCC 1 cut(s) 268
Sse9I AATT 3 cut(s) 11, 66, 228
SsiI CCGC 2 cut(s) 385, 387
SspI AATATT 1 cut(s) 33
SspMI CTAG 1 cut(s) 300
TaaI ACNGT 1 cut(s) 416
TaiI ACGT 2 cut(s) 24, 93
TasI AATT 3 cut(s) 11, 66, 228
TauI GCSGC 1 cut(s) 387
Tru1I TTAA 4 cut(s) 14, 44, 218, 345
Tru9I TTAA 4 cut(s) 14, 44, 218, 345
TseFI GTSAC 2 cut(s) 91, 307
Tsp45I GTSAC 2 cut(s) 91, 307
TspDTI ATGAA 1 cut(s) 32
TspGWI ACGGA 1 cut(s) 228
VpaK11BI GGWCC 1 cut(s) 268
VspI ATTAAT 1 cut(s) 14
XapI RAATTY 1 cut(s) 66
XceI RCATGY 1 cut(s) 168
XspI CTAG 1 cut(s) 300
Zsp2I ATGCAT 1 cut(s) 166
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.