Rmu_sc0005409.1_g000017

ubiquitin-protein transferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005409.1
OG0015571
Physical Location & Seq
Reverse (-)
78151 .. 79185
1035 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1035 bp
atgcacctcatagcctatacattaaccaacgagtttgtttctggaaccgaatcatcaattgaaggttattcagacgaagtgaatcctgatagtatcatgggagatagggataactgtgctatttgtttggagaacgtttctcactttgataatgagactgctactcgcttgctgccctgctcgcacttatttcatacagattgcataacaccgtggctggatactaataacttctgtcccctgtgccgtcagtcggtggatgttgcggaggtggtcgacgagtcatcaagaccctcaagccccagacgagacgaaaacaaccaacacaatgatatgcatcggcctgtcgcgggggagccatcattaccctcaagttctctacaagagtactggtggaactacccaccaaactcatgtccgcagttggcctttgtgggcgagcaatttgtaccgttagcccacccgcaaatcccaagtctgccgtggcctgttgtggccgagccaccgagaccgttaccccccacacatggccagtgggtcatagtcgaaaaccaaccgcaaacctcaagactacaattgcttgtccccgctgggccatggacacccattttttcgccgccacccccaagacctcgagggaatgataatctaatgatcatgttcactgtgtgtttagtatttttgtgcttgtgtctacttatgccaccaatgcagtcgcttgggggtcccctgtgccgtcagtcggtggatgttgcggaggtggtcgacgagtcatcaagaccctcaagccccagacgagacgaaaacagccaacacaatgatatgcatcggcctgtcgcgggggagccatcattaccctcaagttctctacaagagtactggtggaactacccaccaaactcaagtccgcagttggcctttgtgggggagccattagtaccgttagcccacccgcaaatcccaagtctgccgtggcctgttgtggccgagccaccgagaccgttaccccccccacacatggccagtgggtcatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2 zf-rbx1

Protein Analysis

344

Amino Acids

38.26

Weight (kDa)

4.81

Isoelectric Point (pI)

70.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 37 - 83 4.1e-13 Ring finger domain
zf-rbx1 PF12678 37 - 83 4.4e-08 RING-H2 zinc finger domain
zf-RING_11 PF17123 38 - 69 4e-09 RING-like zinc finger
zf-C3HC4 PF00097 39 - 82 3e-08 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2 PF13923 39 - 82 1.7e-07 Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX PF13445 39 - 80 7.6e-06 RING-type zinc-finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 633
AccI GTMKAC 3 cut(s) 276, 694, 765
AccII CGCG 2 cut(s) 350, 839
AclI AACGTT 1 cut(s) 135
AcoI YGGCCR 4 cut(s) 495, 529, 984, 1020
AdeI CACNNNGTG 1 cut(s) 669
AfaI GTAC 4 cut(s) 389, 450, 878, 939
AfiI CCNNNNNNNGG 7 cut(s) 253, 350, 527, 742, 839, 924, 1018
AgsI TTSAA 1 cut(s) 62
Alw26I GTCTC 5 cut(s) 149, 303, 502, 792, 991
Ama87I CYCGRG 1 cut(s) 633
ApeKI GCWGC 1 cut(s) 172
ArsI GACNNNNNNTTYG 4 cut(s) 460, 492, 949, 981
AspS9I GGNCC 2 cut(s) 593, 725
AvaI CYCGRG 1 cut(s) 633
AvaII GGWCC 1 cut(s) 725
BalI TGGCCA 2 cut(s) 531, 1022
BbvI GCAGC 1 cut(s) 159
BccI CCATC 2 cut(s) 367, 856
BceAI ACGGC 4 cut(s) 231, 466, 720, 955
BciVI GTATCC 1 cut(s) 214
BclI TGATCA 1 cut(s) 654
BcoDI GTCTC 5 cut(s) 149, 303, 502, 792, 991
BfuI GTATCC 1 cut(s) 214
BisI GCNGC 2 cut(s) 173, 617
BlsI GCNGC 2 cut(s) 174, 618
BmcAI AGTACT 2 cut(s) 389, 878
Bme18I GGWCC 1 cut(s) 725
BmeT110I CYCGRG 1 cut(s) 633
BmgT120I GGNCC 2 cut(s) 593, 725
BmiI GGNNCC 6 cut(s) 46, 357, 726, 727, 846, 930
BmsI GCATC 2 cut(s) 346, 835
BpuEI CTTGAG 6 cut(s) 280, 355, 550, 769, 844, 886
BsaBI GATNNNNATC 2 cut(s) 336, 825
BsaI GGTCTC 2 cut(s) 502, 991
BsaJI CCNNGG 4 cut(s) 212, 482, 596, 971
Bsc4I CCNNNNNNNGG 7 cut(s) 253, 350, 527, 742, 839, 924, 1018
Bse1I ACTGG 4 cut(s) 395, 532, 884, 1023
Bse8I GATNNNNATC 2 cut(s) 336, 825
BseDI CCNNGG 4 cut(s) 212, 482, 596, 971
BseGI GGATG 2 cut(s) 265, 754
BseJI GATNNNNATC 2 cut(s) 336, 825
BseLI CCNNNNNNNGG 7 cut(s) 253, 350, 527, 742, 839, 924, 1018
BseNI ACTGG 4 cut(s) 395, 532, 884, 1023
BseXI GCAGC 1 cut(s) 159
BseYI CCCAGC 1 cut(s) 590
Bsh1236I CGCG 2 cut(s) 350, 839
BsiHKCI CYCGRG 1 cut(s) 633
BslFI GGGAC 3 cut(s) 222, 569, 711
BslI CCNNNNNNNGG 7 cut(s) 253, 350, 527, 742, 839, 924, 1018
BsmAI GTCTC 5 cut(s) 149, 303, 502, 792, 991
BsmBI CGTCTC 2 cut(s) 303, 792
BsmFI GGGAC 3 cut(s) 222, 569, 711
Bso31I GGTCTC 2 cut(s) 502, 991
BsoBI CYCGRG 1 cut(s) 633
Bsp143I GATC 1 cut(s) 654
Bsp19I CCATGG 1 cut(s) 596
BspFNI CGCG 2 cut(s) 350, 839
BspLI GGNNCC 6 cut(s) 46, 357, 726, 727, 846, 930
BspTNI GGTCTC 2 cut(s) 502, 991
BsrI ACTGG 4 cut(s) 395, 532, 884, 1023
BssECI CCNNGG 4 cut(s) 212, 482, 596, 971
BssMI GATC 1 cut(s) 654
BssT1I CCWWGG 1 cut(s) 596
Bst4CI ACNGT 7 cut(s) 116, 213, 453, 513, 667, 942, 1002
BstC8I GCNNGC 3 cut(s) 170, 182, 440
BstDSI CCRYGG 4 cut(s) 212, 482, 596, 971
BstF5I GGATG 2 cut(s) 265, 754
BstFNI CGCG 2 cut(s) 350, 839
BstKTI GATC 1 cut(s) 657
BstMAI GTCTC 5 cut(s) 149, 303, 502, 792, 991
BstMBI GATC 1 cut(s) 654
BstMWI GCNNNNNNNGC 2 cut(s) 181, 709
BstUI CGCG 2 cut(s) 350, 839
BstV1I GCAGC 1 cut(s) 159
BsuI GTATCC 1 cut(s) 214
BtgI CCRYGG 4 cut(s) 212, 482, 596, 971
BtsCI GGATG 2 cut(s) 265, 754
BtsIMutI CAGTG 3 cut(s) 539, 663, 1030
Cac8I GCNNGC 3 cut(s) 170, 182, 440
Cfr13I GGNCC 2 cut(s) 593, 725
Csp6I GTAC 4 cut(s) 388, 449, 877, 938
CviAII CATG 6 cut(s) 97, 414, 527, 597, 658, 1018
CviQI GTAC 4 cut(s) 388, 449, 877, 938
DpnI GATC 1 cut(s) 656
DpnII GATC 1 cut(s) 654
DraIII CACNNNGTG 1 cut(s) 669
EaeI YGGCCR 4 cut(s) 495, 529, 984, 1020
Eco130I CCWWGG 1 cut(s) 596
Eco31I GGTCTC 2 cut(s) 502, 991
Eco47I GGWCC 1 cut(s) 725
Eco88I CYCGRG 1 cut(s) 633
EcoO109I RGGNCCY 1 cut(s) 725
EcoT14I CCWWGG 1 cut(s) 596
EcoT22I ATGCAT 2 cut(s) 339, 828
ErhI CCWWGG 1 cut(s) 596
Esp3I CGTCTC 2 cut(s) 303, 792
FaeI CATG 6 cut(s) 100, 417, 530, 600, 661, 1021
FaqI GGGAC 3 cut(s) 222, 569, 711
FatI CATG 6 cut(s) 96, 413, 526, 596, 657, 1017
FauI CCCGC 5 cut(s) 343, 471, 595, 832, 960
FbaI TGATCA 1 cut(s) 654
FblI GTMKAC 3 cut(s) 276, 694, 765
Fnu4HI GCNGC 2 cut(s) 173, 617
FokI GGATG 2 cut(s) 272, 761
Fsp4HI GCNGC 2 cut(s) 173, 617
GluI GCNGC 2 cut(s) 173, 617
GsaI CCCAGC 1 cut(s) 594
Hin1II CATG 6 cut(s) 100, 417, 530, 600, 661, 1021
HincII GTYRAC 2 cut(s) 277, 766
HindII GTYRAC 2 cut(s) 277, 766
HinfI GANTC 4 cut(s) 50, 82, 281, 770
Hpy166II GTNNAC 4 cut(s) 277, 663, 695, 766
Hpy188I TCNGA 1 cut(s) 73
Hpy188III TCNNGA 5 cut(s) 42, 86, 288, 567, 777
Hpy8I GTNNAC 4 cut(s) 277, 663, 695, 766
Hpy99I CGWCG 2 cut(s) 281, 770
HpyAV CCTTC 1 cut(s) 56
HpyCH4III ACNGT 7 cut(s) 116, 213, 453, 513, 667, 942, 1002
HpyCH4IV ACGT 1 cut(s) 135
HpyCH4V TGCA 5 cut(s) 4, 204, 337, 712, 826
HpyF10VI GCNNNNNNNGC 2 cut(s) 181, 709
HpySE526I ACGT 1 cut(s) 135
Hsp92II CATG 6 cut(s) 100, 417, 530, 600, 661, 1021
KflI GGGWCCC 1 cut(s) 725
Ksp22I TGATCA 1 cut(s) 654
Kzo9I GATC 1 cut(s) 654
LmnI GCTCC 3 cut(s) 355, 844, 928
Lsp1109I GCAGC 1 cut(s) 159
LweI GCATC 2 cut(s) 346, 835
MaeII ACGT 1 cut(s) 135
MaeIII GTNAC 2 cut(s) 513, 1002
MalI GATC 1 cut(s) 656
MboI GATC 1 cut(s) 654
MfeI CAATTG 2 cut(s) 57, 575
MlsI TGGCCA 2 cut(s) 531, 1022
MluCI AATT 3 cut(s) 57, 443, 575
MluNI TGGCCA 2 cut(s) 531, 1022
MlyI GAGTC 2 cut(s) 290, 779
Mox20I TGGCCA 2 cut(s) 531, 1022
Mph1103I ATGCAT 2 cut(s) 339, 828
MscI TGGCCA 2 cut(s) 531, 1022
MseI TTAA 1 cut(s) 23
Msp20I TGGCCA 2 cut(s) 531, 1022
MspA1I CMGCKG 1 cut(s) 590
MunI CAATTG 2 cut(s) 57, 575
MvnI CGCG 2 cut(s) 350, 839
MwoI GCNNNNNNNGC 2 cut(s) 181, 709
NcoI CCATGG 1 cut(s) 596
NdeII GATC 1 cut(s) 654
NlaIII CATG 6 cut(s) 100, 417, 530, 600, 661, 1021
NlaIV GGNNCC 6 cut(s) 46, 357, 726, 727, 846, 930
NmeAIII GCCGAG 2 cut(s) 523, 1012
NsiI ATGCAT 2 cut(s) 339, 828
PaeR7I CTCGAG 1 cut(s) 633
PfeI GAWTC 2 cut(s) 50, 82
PkrI GCNGC 2 cut(s) 174, 618
PleI GAGTC 2 cut(s) 289, 778
PpsI GAGTC 2 cut(s) 289, 778
PpuMI RGGWCCY 1 cut(s) 725
Psp1406I AACGTT 1 cut(s) 135
Psp5II RGGWCCY 1 cut(s) 725
PspFI CCCAGC 1 cut(s) 590
PspN4I GGNNCC 6 cut(s) 46, 357, 726, 727, 846, 930
PspPI GGNCC 2 cut(s) 593, 725
PspPPI RGGWCCY 1 cut(s) 725
PspXI VCTCGAGB 1 cut(s) 633
RsaI GTAC 4 cut(s) 389, 450, 878, 939
RsaNI GTAC 4 cut(s) 388, 449, 877, 938
SalI GTCGAC 2 cut(s) 275, 764
SaqAI TTAA 1 cut(s) 23
SatI GCNGC 2 cut(s) 173, 617
Sau3AI GATC 1 cut(s) 654
Sau96I GGNCC 2 cut(s) 593, 725
ScaI AGTACT 2 cut(s) 389, 878
SchI GAGTC 2 cut(s) 290, 779
SetI ASST 7 cut(s) 9, 67, 138, 273, 566, 634, 762
SfaNI GCATC 2 cut(s) 346, 835
Sfr274I CTCGAG 1 cut(s) 633
SinI GGWCC 1 cut(s) 725
SlaI CTCGAG 1 cut(s) 633
SmlI CTYRAG 7 cut(s) 295, 370, 565, 633, 784, 859, 901
SmoI CTYRAG 7 cut(s) 295, 370, 565, 633, 784, 859, 901
Sse9I AATT 3 cut(s) 57, 443, 575
StyI CCWWGG 1 cut(s) 596
TaaI ACNGT 7 cut(s) 116, 213, 453, 513, 667, 942, 1002
TaiI ACGT 1 cut(s) 138
TaqI TCGA 4 cut(s) 276, 546, 634, 765
TasI AATT 3 cut(s) 57, 443, 575
TatI WGTACW 2 cut(s) 387, 876
TauI GCSGC 1 cut(s) 619
TfiI GAWTC 2 cut(s) 50, 82
Tru1I TTAA 1 cut(s) 23
Tru9I TTAA 1 cut(s) 23
TscAI CASTG 3 cut(s) 539, 670, 1030
TseI GCWGC 1 cut(s) 172
TspDTI ATGAA 1 cut(s) 182
TspRI CASTG 3 cut(s) 539, 670, 1030
VpaK11BI GGWCC 1 cut(s) 725
XcmI CCANNNNNNNNNTGG 2 cut(s) 480, 969
XhoI CTCGAG 1 cut(s) 633
XmiI GTMKAC 3 cut(s) 276, 694, 765
ZrmI AGTACT 2 cut(s) 389, 878
Zsp2I ATGCAT 2 cut(s) 339, 828
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.