Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005446.1

Orthogroup ID

OG0016980

Physical Location & Seq

Genomic Coordinates Forward (+)

19149 .. 21514

Gene Structure 2366 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005446.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

atgcgagtgttcaatgagttgaggaagctggaaatattcttcaaggatgagagcaggcatggcgttttgataattgatttgtacaaccttgttcagcatgctgacaacatcctattaagattgctgtggaccttggacagtgtaggtacctttcagtatggtccctattgtatagaggccgatgacttgcatgctgtagtccaacacttctctggagtaaattgtgtaccaagtgcaatcattgggcacagtaaaggtgtgtttttgggttacaaatggggtgaatcaggaggcatgagcttcaattcgttaactcagggaatcagggccttggcattcggtaattgtctagctaaatatgatgctgacccagcggcaaaggcagctgctgcaactgtcctgggcatccaagttgggtgtgaattgcattcaggagatgaatctagagctaatgttgcacaagataatgaacttgtccatattgcaatattacttgtgggtgaggattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008565 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0016197 GO:0016482 GO:0030904 GO:0031410 GO:0031982 GO:0032991 GO:0033036 GO:0034613 GO:0042147 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0097708 GO:0098796

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

Vps35

Protein Analysis

169

Amino Acids

18.42

Weight (kDa)

5.24

Isoelectric Point (pI)

31.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016980)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0125801 RchiOBHm_Chr5g0039701
rosa_multiflora	Rmu_sc0002322.1_g000063 Rmu_sc0005446.1_g000007
rosa_roxburghii	Rroxscaffold_2G00133520 Rroxscaffold_3G00239770 Rroxscaffold_7G00192690
rosa_rugosa	Rorug02G0042900 Rorug02G0042900 Rorug02G0043000 Rorug05G0516600 Rorug06G0090500 Rorug06G0295400
rosa_samantha	Rh7BG322900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	146
AccB1I	GGYRCC	1 cut(s)	146
AciI	CCGC	1 cut(s)	374
AfaI	GTAC	3 cut(s)	83, 148, 228
AgsI	TTSAA	3 cut(s)	13, 43, 304
AjnI	CCWGG	1 cut(s)	399
AluBI	AGCT	5 cut(s)	28, 300, 353, 386, 449
AluI	AGCT	5 cut(s)	28, 300, 353, 386, 449
AlwNI	CAGNNNCTG	1 cut(s)	389
AoxI	GGCC	2 cut(s)	177, 327
ApeKI	GCWGC	3 cut(s)	383, 386, 389
Asp718I	GGTACC	1 cut(s)	146
AspS9I	GGNCC	3 cut(s)	129, 161, 327
AsuHPI	GGTGA	1 cut(s)	293
AvaII	GGWCC	2 cut(s)	129, 161
BaeGI	GKGCMC	1 cut(s)	249
BanI	GGYRCC	1 cut(s)	146
BbvI	GCAGC	3 cut(s)	373, 376, 395
BciT130I	CCWGG	1 cut(s)	401
BfaI	CTAG	2 cut(s)	350, 444
BfmI	CTRYAG	1 cut(s)	195
BisI	GCNGC	4 cut(s)	375, 384, 387, 390
BlsI	GCNGC	4 cut(s)	376, 385, 388, 391
Bme1390I	CCNGG	1 cut(s)	401
Bme18I	GGWCC	2 cut(s)	129, 161
BmgT120I	GGNCC	3 cut(s)	129, 161, 327
BmiI	GGNNCC	2 cut(s)	148, 163
BmrFI	CCNGG	1 cut(s)	401
BmsI	GCATC	2 cut(s)	352, 414
BpmI	CTGGAG	1 cut(s)	234
BsaJI	CCNNGG	3 cut(s)	132, 330, 400
BseBI	CCWGG	1 cut(s)	401
BseDI	CCNNGG	3 cut(s)	132, 330, 400
BseGI	GGATG	3 cut(s)	52, 108, 405
BseMII	CTCAG	1 cut(s)	329
BseSI	GKGCMC	1 cut(s)	249
BseXI	GCAGC	3 cut(s)	373, 376, 395
BseYI	CCCAGC	1 cut(s)	370
BshFI	GGCC	2 cut(s)	179, 329
BshNI	GGYRCC	1 cut(s)	146
BslFI	GGGAC	1 cut(s)	147
BsmFI	GGGAC	1 cut(s)	147
BsmI	GAATGC	2 cut(s)	335, 427
BsnI	GGCC	2 cut(s)	179, 329
Bsp1286I	GDGCHC	1 cut(s)	249
Bsp1407I	TGTACA	1 cut(s)	81
BspACI	CCGC	1 cut(s)	374
BspANI	GGCC	2 cut(s)	179, 329
BspCNI	CTCAG	1 cut(s)	328
BspLI	GGNNCC	2 cut(s)	148, 163
BspT107I	GGYRCC	1 cut(s)	146
BsrGI	TGTACA	1 cut(s)	81
BssECI	CCNNGG	3 cut(s)	132, 330, 400
BssT1I	CCWWGG	2 cut(s)	132, 330
Bst2UI	CCWGG	1 cut(s)	401
Bst4CI	ACNGT	3 cut(s)	140, 251, 397
BstAPI	GCANNNNNTGC	1 cut(s)	389
BstAUI	TGTACA	1 cut(s)	81
BstC8I	GCNNGC	3 cut(s)	56, 99, 192
BstDEI	CTNAG	1 cut(s)	315
BstF5I	GGATG	3 cut(s)	52, 108, 405
BstMWI	GCNNNNNNNGC	6 cut(s)	60, 371, 380, 383, 389, 455
BstNI	CCWGG	1 cut(s)	401
BstNSI	RCATGY	2 cut(s)	101, 194
BstSCI	CCNGG	1 cut(s)	399
BstSFI	CTRYAG	1 cut(s)	195
BstSLI	GKGCMC	1 cut(s)	249
BstV1I	GCAGC	3 cut(s)	373, 376, 395
BsuRI	GGCC	2 cut(s)	179, 329
BtsCI	GGATG	3 cut(s)	52, 108, 405
BtsIMutI	CAGTG	1 cut(s)	145
Cac8I	GCNNGC	3 cut(s)	56, 99, 192
CaiI	CAGNNNCTG	1 cut(s)	389
Cfr13I	GGNCC	3 cut(s)	129, 161, 327
Csp6I	GTAC	3 cut(s)	82, 147, 227
CviAII	CATG	4 cut(s)	59, 98, 191, 295
CviJI	RGCY	7 cut(s)	28, 179, 300, 329, 353, 386, 449
CviKI_1	RGCY	7 cut(s)	28, 179, 300, 329, 353, 386, 449
CviQI	GTAC	3 cut(s)	82, 147, 227
DdeI	CTNAG	1 cut(s)	315
Eco130I	CCWWGG	2 cut(s)	132, 330
Eco47I	GGWCC	2 cut(s)	129, 161
EcoO109I	RGGNCCY	1 cut(s)	327
EcoRII	CCWGG	1 cut(s)	399
EcoT14I	CCWWGG	2 cut(s)	132, 330
ErhI	CCWWGG	2 cut(s)	132, 330
FaeI	CATG	4 cut(s)	62, 101, 194, 298
FaiI	YATR	8 cut(s)	60, 99, 159, 173, 192, 296, 360, 480
FaqI	GGGAC	1 cut(s)	147
FatI	CATG	4 cut(s)	58, 97, 190, 294
Fnu4HI	GCNGC	4 cut(s)	375, 384, 387, 390
FokI	GGATG	3 cut(s)	59, 95, 392
Fsp4HI	GCNGC	4 cut(s)	375, 384, 387, 390
FspBI	CTAG	2 cut(s)	350, 444
GluI	GCNGC	4 cut(s)	375, 384, 387, 390
GsaI	CCCAGC	1 cut(s)	374
GsuI	CTGGAG	1 cut(s)	234
HaeIII	GGCC	2 cut(s)	179, 329
Hin1II	CATG	4 cut(s)	62, 101, 194, 298
HincII	GTYRAC	1 cut(s)	312
HindII	GTYRAC	1 cut(s)	312
HinfI	GANTC	3 cut(s)	284, 321, 440
HpaI	GTTAAC	1 cut(s)	312
HphI	GGTGA	1 cut(s)	293
Hpy166II	GTNNAC	3 cut(s)	129, 227, 312
Hpy188III	TCNNGA	4 cut(s)	213, 288, 432, 444
Hpy8I	GTNNAC	3 cut(s)	129, 227, 312
HpyCH4III	ACNGT	3 cut(s)	140, 251, 397
HpyCH4V	TGCA	6 cut(s)	190, 236, 392, 427, 458, 485
HpyF10VI	GCNNNNNNNGC	6 cut(s)	60, 371, 380, 383, 389, 455
HpyF3I	CTNAG	1 cut(s)	315
Hsp92II	CATG	4 cut(s)	62, 101, 194, 298
KpnI	GGTACC	1 cut(s)	150
KspAI	GTTAAC	1 cut(s)	312
Lsp1109I	GCAGC	3 cut(s)	373, 376, 395
LweI	GCATC	2 cut(s)	352, 414
MaeI	CTAG	2 cut(s)	350, 444
MaeIII	GTNAC	1 cut(s)	269
MboII	GAAGA	1 cut(s)	31
MhlI	GDGCHC	1 cut(s)	249
MluCI	AATT	5 cut(s)	72, 220, 304, 343, 422
MmeI	TCCRAC	1 cut(s)	226
MnlI	CCTC	4 cut(s)	15, 169, 284, 496
MseI	TTAA	2 cut(s)	116, 311
MspA1I	CMGCKG	2 cut(s)	374, 386
MspR9I	CCNGG	1 cut(s)	401
Mva1269I	GAATGC	2 cut(s)	335, 427
MvaI	CCWGG	1 cut(s)	401
MwoI	GCNNNNNNNGC	6 cut(s)	60, 371, 380, 383, 389, 455
NlaIII	CATG	4 cut(s)	62, 101, 194, 298
NlaIV	GGNNCC	2 cut(s)	148, 163
NspI	RCATGY	2 cut(s)	101, 194
PaeI	GCATGC	2 cut(s)	101, 194
PctI	GAATGC	2 cut(s)	335, 427
PfeI	GAWTC	3 cut(s)	284, 321, 440
PkrI	GCNGC	4 cut(s)	376, 385, 388, 391
Psp6I	CCWGG	1 cut(s)	399
PspFI	CCCAGC	1 cut(s)	370
PspGI	CCWGG	1 cut(s)	399
PspN4I	GGNNCC	2 cut(s)	148, 163
PspPI	GGNCC	3 cut(s)	129, 161, 327
PstNI	CAGNNNCTG	1 cut(s)	389
PvuII	CAGCTG	1 cut(s)	386
RsaI	GTAC	3 cut(s)	83, 148, 228
RsaNI	GTAC	3 cut(s)	82, 147, 227
SaqAI	TTAA	2 cut(s)	116, 311
SatI	GCNGC	4 cut(s)	375, 384, 387, 390
Sau96I	GGNCC	3 cut(s)	129, 161, 327
ScrFI	CCNGG	1 cut(s)	401
SduI	GDGCHC	1 cut(s)	249
SfaNI	GCATC	2 cut(s)	352, 414
SfcI	CTRYAG	1 cut(s)	195
SinI	GGWCC	2 cut(s)	129, 161
SphI	GCATGC	2 cut(s)	101, 194
Sse9I	AATT	5 cut(s)	72, 220, 304, 343, 422
SsiI	CCGC	1 cut(s)	374
SspI	AATATT	2 cut(s)	36, 489
SspMI	CTAG	2 cut(s)	350, 444
StyD4I	CCNGG	1 cut(s)	399
StyI	CCWWGG	2 cut(s)	132, 330
TaaI	ACNGT	3 cut(s)	140, 251, 397
TasI	AATT	5 cut(s)	72, 220, 304, 343, 422
TatI	WGTACW	1 cut(s)	81
TauI	GCSGC	1 cut(s)	377
TfiI	GAWTC	3 cut(s)	284, 321, 440
Tru1I	TTAA	2 cut(s)	116, 311
Tru9I	TTAA	2 cut(s)	116, 311
TscAI	CASTG	1 cut(s)	145
TseI	GCWGC	3 cut(s)	383, 386, 389
TspDTI	ATGAA	2 cut(s)	453, 483
TspRI	CASTG	1 cut(s)	145
VpaK11BI	GGWCC	2 cut(s)	129, 161
XbaI	TCTAGA	1 cut(s)	443
XceI	RCATGY	2 cut(s)	101, 194
XcmI	CCANNNNNNNNNTGG	1 cut(s)	209
XspI	CTAG	2 cut(s)	350, 444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.