Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0016980

Physical Location & Seq

Genomic Coordinates Forward (+)

3369595 .. 3372456

Gene Structure 2862 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0043000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2487 bp

ATGGCTTCTTTACCTTACAGCACCATTCCAAACACACACCTCTCTTCATCCAAACACTCCATACCCATAGAAAACCAAAAACCATCACAAGCCCATTTCCCAAAGCTTCAAGAAAATGCAACCCAGAATCAAACTCTGTCCAAATCTTACTTCAATCAGATCTCCAAACAGAGCCAAATTCAAGAAGCCGTAGACTTGCTCATCCATATGGACCTCAAGAGCCTCCACATTGGGCCCGAAATCTACGGCGAGCTGCTTCAGGCGTGTGTCTACGAGCGAGCTCTTCAAACCGGAAAGCAAATCCACGCCCGGATTATCAAGAAAGGTGAGCTGTTTTCAACAAATGAGTACATTGAAACTAAACTAGTGATCTTTTACGCAAAATGCGATGATGGGAAAGCTTCGAATCGTTTGTTTAGAAGGGTGAGATTGAAAAATGTGTTTTCTTGGGCTGCAGTTGTTGGATTGAATTGTAGATTGGGTTTTTACAAAGAGGCTTTGCTAGGGTTTATGGAAATGCATGAAGATGGGTTGTTTCCGGATAATTTTGTGGTTCCGAATGTGTTGAAGGCTTGCGGGGCGATGGAGTGGATTGGAGTTGGGAAAGCAGTTCATGGATATGTGGTCAAGATGGGTTGTAATGGGTGTGTGTTTGTTGCTAGTAGTCTTGTAGATATGTATGGAAAATGTGGGGTTGTGGATGATGCGAGGAAGGTGTTTGATGAAATGGTTGGGAGAAATGTGATCACATGGAATTCGATGCTTGTGAGTTATGTGCAAAATGGATTGAATGAGGATGCTATTAGGGTGTTTTGTGATATGAGGGAGGAAGGCGTTGAACCTACTCATGTGACTGTGTCTAGCTTTCTGTCGGCTTCGGCTAATTTAGGTGCGCTAGAAGAAGGTAAGCAAGGGCATGCATTAGCAGTTGTGAGTGGACTTGAACTGAATACCATTTTGGGGAGTTCTATTATAAACTTTTATTCCAAGGTTGGTTTGATTGAGGATGCTGAAATAGTTTTTAGTAGGATGAATGAGAAAGATGTGGTTACATGGAATTTGCTCATATCTGGGTATTTGCAAATTGGGGATGTTGATAAAGGTCTTGATATGTGCCGCATAATGAGACTCGAAAACTTGAGGTTTGACTCGGTGACTCTTGCATCCCTTATGTCTGCTTTTGCAGATACACGAAATTTGAAATTTGGCAAGGAGGCGCACTGTTATTGTATAAGGAACAACCTTGAGGGTGATGTGGTTGTTGCAAGTAGTATAGTAGACCTGTATGCCAAATGTGAGAAAATTGATTATGCAAGACGAGCTTTCGAATCTGCAACAACTGGAGATCTTGTACTGTGGAACACACTTCTGGCTGCTTATGCAGGATTGGGACATAGTGGTGAGGCATTGAAATTGTTCTATCAGATGCAACTGGAAAGTGTGCCTCCAAATGTGATGACTTGGAACTCTCTGATATTTGGTTTTTTGAAAAATGGTCAGGTCAATGAGGCTCAAGATATGTTCTTGCAGATGCAGTCCCTTGGTGTCGAGCCAAACCTGGTCACTTGGACTACTATGATCTCTGGTCTGGCGGAGAATGGGTTTGGCCATGAAGCAATTCAGGCCTTCCATCAGATGCAAGAAGCGGGAATCAAACCCAATGTTGTGAGTATCATTTGTGTACTTAAGGCTTGCATAGAAATGGCATCATTACAGAATGGAAGAGTTATACATGGGTATTTGATTAGGCATTCCCTCTACCTTTCAATCCCAATTGCAACATCTTTAGTGGATATGTATGCTAAATGTGGTAACATAGAAGAAGCAAAGAGAGTGTTTGATATGGTGTCAGACAAGGAGTTACCTATCTATAATGCAATGATCTCCAGTTACGCATTACATGGTCAAGCTGTGGAAGCTCTTGCGCTATACCGGCGTTTAAAGGAAGAAGGCTTACAACCCGACAGTGTAACCTTTACTAATGCCTTATATGCATGTAGCCATGCCAGTCTAGTGAGTGAAGGTTTGGAGCTTTTGGATGACTTGTTATCCAATCAAACTATAAATCCAAGTATTGAGCACTATGGTTGTGTGGTTAATCTTCTTTCTCGGTGTGGCAATGTGGATGAAGCTTTTAGGCTTATTGTCGCAATGCCTTATGAGACTGATGCACAGATATTAGGATCATTACTTGCAGTTTGTAGAGAACAGAATAACATAGAACTAGAGGAGTATCTGTCCGATCAATTACTGAAATTAGAGCCAGAGAATTCTGGAAACTATGTAGCGATTTCAAATGCATATGCAGTTGCAGGAAGATGGGATGAGGTAAAGAAAGTGAGGCAGTTAATGAAAGAAAAGGGCCTGAGAAAGATTCCTGGATGCAGCTGGATTCAAATTGGAGAAGAAATCCATGCGTTTGTTGCTGGTGACAAATCACACCCAGAAACTGAGCAAATCTATATGACATTGGAATTGTTGGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0009628 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0010051 GO:0010305 GO:0014070 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0043401 GO:0048545 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_1 TPR_11 TPR_16 TPR_19 TPR_2 TPR_6 TPR_8 Thioredoxin

Protein Analysis

828

Amino Acids

92.09

Weight (kDa)

5.38

Isoelectric Point (pI)

35.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	246 - 293	2e-11	PPR repeat family
PPR_3	PF13812	246 - 292	2.3e-06	Pentatricopeptide repeat domain
PPR	PF01535	249 - 279	4.2e-07	PPR repeat
PPR_2	PF13041	347 - 395	5.3e-08	PPR repeat family
PPR_2	PF13041	449 - 492	1.8e-08	PPR repeat family
PPR_1	PF12854	481 - 511	5.3e-07	PPR repeat
PPR_2	PF13041	483 - 531	6.6e-16	PPR repeat family
PPR	PF01535	487 - 516	7e-07	PPR repeat
PPR_3	PF13812	510 - 565	1.9e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	515 - 547	5.8e-07	PPR repeat
PPR_2	PF13041	518 - 565	1.2e-10	PPR repeat family
PPR	PF01535	521 - 551	4e-07	PPR repeat
PPR_2	PF13041	623 - 667	5.2e-08	PPR repeat family
PPR	PF01535	623 - 652	8.8e-06	PPR repeat
E_motif	PF20431	738 - 799	4.5e-23	E motif
Eplus_motif	PF20430	804 - 825	1e-06	E+ motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0016980)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0125801 RchiOBHm_Chr5g0039701
rosa_multiflora	Rmu_sc0002322.1_g000063 Rmu_sc0005446.1_g000007
rosa_roxburghii	Rroxscaffold_2G00133520 Rroxscaffold_3G00239770 Rroxscaffold_7G00192690
rosa_rugosa	Rorug02G0042900 Rorug02G0042900 Rorug02G0043000 Rorug05G0516600 Rorug06G0090500 Rorug06G0295400
rosa_samantha	Rh7BG322900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	974
AccI	GTMKAC	3 cut(s)	192, 270, 1278
AccIII	TCCGGA	1 cut(s)	538
AciI	CCGC	4 cut(s)	576, 1117, 1592, 1646
AclWI	GGATC	1 cut(s)	2191
AcoI	YGGCCR	1 cut(s)	1606
AcsI	RAATTY	6 cut(s)	177, 754, 1057, 1195, 1202, 2269
AcuI	CTGAAG	1 cut(s)	242
AfaI	GTAC	3 cut(s)	350, 1353, 1683
AfiI	CCNNNNNNNGG	1 cut(s)	960
AflII	CTTAAG	1 cut(s)	1685
AhlI	ACTAGT	1 cut(s)	364
AjnI	CCWGG	2 cut(s)	1557, 2377
AjuI	GAANNNNNNNTTGG	6 cut(s)	134, 166, 461, 493, 941, 973
Alw21I	GWGCWC	2 cut(s)	283, 2082
Alw26I	GTCTC	2 cut(s)	1120, 2156
AlwI	GGATC	1 cut(s)	2191
AlwNI	CAGNNNCTG	1 cut(s)	2450
Aor13HI	TCCGGA	1 cut(s)	538
AoxI	GGCC	4 cut(s)	233, 1606, 1623, 2362
ApaI	GGGCCC	1 cut(s)	237
ApeKI	GCWGC	4 cut(s)	253, 452, 1373, 2385
ApoI	RAATTY	6 cut(s)	177, 754, 1057, 1195, 1202, 2269
Asp700I	GAANNNNTTC	2 cut(s)	1415, 1617
AspLEI	GCGC	3 cut(s)	895, 1219, 1927
AspS9I	GGNCC	4 cut(s)	211, 233, 234, 2362
AsuC2I	CCSGG	1 cut(s)	310
AsuHPI	GGTGA	6 cut(s)	338, 436, 1165, 1262, 1412, 2441
AsuII	TTCGAA	2 cut(s)	404, 1326
AvaII	GGWCC	1 cut(s)	211
BaeGI	GKGCMC	1 cut(s)	237
BalI	TGGCCA	1 cut(s)	1608
BanII	GRGCYC	2 cut(s)	237, 283
BarI	GAAGNNNNNNTAC	2 cut(s)	1938, 1970
Bbv12I	GWGCWC	2 cut(s)	283, 2082
BbvI	GCAGC	4 cut(s)	240, 439, 1360, 2397
BccI	CCATC	7 cut(s)	91, 386, 521, 577, 625, 1638, 2313
BceAI	ACGGC	2 cut(s)	173, 262
BciT130I	CCWGG	2 cut(s)	1559, 2379
BclI	TGATCA	1 cut(s)	744
BcnI	CCSGG	1 cut(s)	310
BcoDI	GTCTC	2 cut(s)	1120, 2156
BcuI	ACTAGT	1 cut(s)	364
BfaI	CTAG	7 cut(s)	365, 503, 660, 861, 896, 2012, 2225
BfmI	CTRYAG	1 cut(s)	453
BfrI	CTTAAG	1 cut(s)	1685
BglII	AGATCT	2 cut(s)	159, 1345
BisI	GCNGC	5 cut(s)	254, 453, 1117, 1374, 2386
BlsI	GCNGC	5 cut(s)	255, 454, 1118, 1375, 2387
Bme1390I	CCNGG	3 cut(s)	310, 1559, 2379
Bme18I	GGWCC	1 cut(s)	211
BmgT120I	GGNCC	4 cut(s)	211, 233, 234, 2362
BmiI	GGNNCC	2 cut(s)	235, 555
BmrFI	CCNGG	3 cut(s)	310, 1559, 2379
BpmI	CTGGAG	2 cut(s)	1362, 1870
Bpu14I	TTCGAA	2 cut(s)	404, 1326
BpuEI	CTTGAG	4 cut(s)	200, 1159, 1265, 1497
BpuMI	CCSGG	1 cut(s)	310
BsaJI	CCNNGG	2 cut(s)	987, 1540
BsaWI	WCCGGW	2 cut(s)	290, 538
BsaXI	ACNNNNNCTCC	6 cut(s)	1335, 1365, 1586, 1616, 2222, 2252
Bsc4I	CCNNNNNNNGG	1 cut(s)	960
Bse118I	RCCGGY	1 cut(s)	1932
Bse1I	ACTGG	4 cut(s)	1345, 1437, 1887, 2007
Bse3DI	GCAATG	3 cut(s)	1884, 2125, 2157
BseAI	TCCGGA	1 cut(s)	538
BseBI	CCWGG	2 cut(s)	1559, 2379
BseDI	CCNNGG	2 cut(s)	987, 1540
BseLI	CCNNNNNNNGG	1 cut(s)	960
BseMI	GCAATG	3 cut(s)	1884, 2125, 2157
BseMII	CTCAG	2 cut(s)	2357, 2442
BseNI	ACTGG	4 cut(s)	1345, 1437, 1887, 2007
BseRI	GAGGAG	1 cut(s)	2243
BseSI	GKGCMC	1 cut(s)	237
BseXI	GCAGC	4 cut(s)	240, 439, 1360, 2397
BshFI	GGCC	4 cut(s)	235, 1608, 1625, 2364
BsiHKAI	GWGCWC	2 cut(s)	283, 2082
BsiSI	CCGG	4 cut(s)	291, 310, 539, 1933
BslFI	GGGAC	2 cut(s)	1404, 1522
BslI	CCNNNNNNNGG	1 cut(s)	960
BsmAI	GTCTC	2 cut(s)	1120, 2156
BsmFI	GGGAC	2 cut(s)	1404, 1522
BsmI	GAATGC	1 cut(s)	1750
BsnI	GGCC	4 cut(s)	235, 1608, 1625, 2364
Bsp119I	TTCGAA	2 cut(s)	404, 1326
Bsp120I	GGGCCC	1 cut(s)	233
Bsp1286I	GDGCHC	3 cut(s)	237, 283, 2082
Bsp13I	TCCGGA	1 cut(s)	538
Bsp143I	GATC	8 cut(s)	159, 369, 744, 1345, 1578, 1881, 2183, 2242
BspACI	CCGC	4 cut(s)	576, 1117, 1592, 1646
BspANI	GGCC	4 cut(s)	235, 1608, 1625, 2364
BspCNI	CTCAG	2 cut(s)	2358, 2443
BspEI	TCCGGA	1 cut(s)	538
BspLI	GGNNCC	2 cut(s)	235, 555
BspMAI	CTGCAG	1 cut(s)	457
BspPI	GGATC	1 cut(s)	2191
BspQI	GCTCTTC	1 cut(s)	288
BspT104I	TTCGAA	2 cut(s)	404, 1326
BspTI	CTTAAG	1 cut(s)	1685
BsrDI	GCAATG	3 cut(s)	1884, 2125, 2157
BsrFI	RCCGGY	1 cut(s)	1932
BsrI	ACTGG	4 cut(s)	1345, 1437, 1887, 2007
BssAI	RCCGGY	1 cut(s)	1932
BssECI	CCNNGG	2 cut(s)	987, 1540
BssMI	GATC	8 cut(s)	159, 369, 744, 1345, 1578, 1881, 2183, 2242
BssT1I	CCWWGG	2 cut(s)	987, 1540
Bst2UI	CCWGG	2 cut(s)	1559, 2379
Bst4CI	ACNGT	4 cut(s)	856, 1223, 1356, 1967
Bst6I	CTCTTC	3 cut(s)	49, 288, 1717
BstAFI	CTTAAG	1 cut(s)	1685
BstBI	TTCGAA	2 cut(s)	404, 1326
BstC8I	GCNNGC	5 cut(s)	251, 279, 574, 918, 1693
BstDEI	CTNAG	2 cut(s)	2366, 2451
BstHHI	GCGC	3 cut(s)	895, 1219, 1927
BstKTI	GATC	8 cut(s)	162, 372, 747, 1348, 1581, 1884, 2186, 2245
BstMAI	GTCTC	2 cut(s)	1120, 2156
BstMBI	GATC	8 cut(s)	159, 369, 744, 1345, 1578, 1881, 2183, 2242
BstMWI	GCNNNNNNNGC	8 cut(s)	578, 1319, 1379, 1622, 1916, 1933, 1991, 2423
BstNI	CCWGG	2 cut(s)	1559, 2379
BstNSI	RCATGY	2 cut(s)	920, 1998
BstSCI	CCNGG	3 cut(s)	308, 1557, 2377
BstSFI	CTRYAG	1 cut(s)	453
BstSLI	GKGCMC	1 cut(s)	237
BstV1I	GCAGC	4 cut(s)	240, 439, 1360, 2397
BstX2I	RGATCY	2 cut(s)	159, 1345
BstYI	RGATCY	2 cut(s)	159, 1345
BsuRI	GGCC	4 cut(s)	235, 1608, 1625, 2364
BtgZI	GCGATG	2 cut(s)	402, 596
BtsIMutI	CAGTG	2 cut(s)	1219, 1972
Cac8I	GCNNGC	5 cut(s)	251, 279, 574, 918, 1693
CaiI	CAGNNNCTG	1 cut(s)	2450
CfoI	GCGC	3 cut(s)	895, 1219, 1927
Cfr10I	RCCGGY	1 cut(s)	1932
Cfr13I	GGNCC	4 cut(s)	211, 233, 234, 2362
CsiI	ACCWGGT	1 cut(s)	1557
Csp6I	GTAC	3 cut(s)	349, 1352, 1682
CviQI	GTAC	3 cut(s)	349, 1352, 1682
DdeI	CTNAG	2 cut(s)	2366, 2451
DpnI	GATC	8 cut(s)	161, 371, 746, 1347, 1580, 1883, 2185, 2244
DpnII	GATC	8 cut(s)	159, 369, 744, 1345, 1578, 1881, 2183, 2242
DraI	TTTAAA	1 cut(s)	1941
EaeI	YGGCCR	1 cut(s)	1606
Eam1104I	CTCTTC	3 cut(s)	49, 288, 1717
EarI	CTCTTC	3 cut(s)	49, 288, 1717
EciI	GGCGGA	1 cut(s)	1607
Ecl136II	GAGCTC	1 cut(s)	281
Eco130I	CCWWGG	2 cut(s)	987, 1540
Eco147I	AGGCCT	1 cut(s)	1625
Eco24I	GRGCYC	2 cut(s)	237, 283
Eco47I	GGWCC	1 cut(s)	211
Eco53kI	GAGCTC	1 cut(s)	281
Eco57I	CTGAAG	1 cut(s)	242
EcoICRI	GAGCTC	1 cut(s)	281
EcoO109I	RGGNCCY	1 cut(s)	2362
EcoRI	GAATTC	2 cut(s)	754, 2269
EcoRII	CCWGG	2 cut(s)	1557, 2377
EcoT14I	CCWWGG	2 cut(s)	987, 1540
EcoT22I	ATGCAT	4 cut(s)	522, 922, 1996, 2302
EcoT38I	GRGCYC	2 cut(s)	237, 283
ErhI	CCWWGG	2 cut(s)	987, 1540
FalI	AAGNNNNNCTT	2 cut(s)	1306, 1338
FaqI	GGGAC	2 cut(s)	1404, 1522
FauI	CCCGC	2 cut(s)	569, 1639
FauNDI	CATATG	2 cut(s)	207, 2302
FbaI	TGATCA	1 cut(s)	744
FblI	GTMKAC	3 cut(s)	192, 270, 1278
Fnu4HI	GCNGC	5 cut(s)	254, 453, 1117, 1374, 2386
FriOI	GRGCYC	2 cut(s)	237, 283
Fsp4HI	GCNGC	5 cut(s)	254, 453, 1117, 1374, 2386
FspBI	CTAG	7 cut(s)	365, 503, 660, 861, 896, 2012, 2225
GlaI	GCGC	3 cut(s)	894, 1218, 1926
GluI	GCNGC	5 cut(s)	254, 453, 1117, 1374, 2386
GsuI	CTGGAG	2 cut(s)	1362, 1870
HaeIII	GGCC	4 cut(s)	235, 1608, 1625, 2364
HapII	CCGG	4 cut(s)	291, 310, 539, 1933
HhaI	GCGC	3 cut(s)	895, 1219, 1927
Hin6I	GCGC	3 cut(s)	893, 1217, 1925
HinP1I	GCGC	3 cut(s)	893, 1217, 1925
HindIII	AAGCTT	3 cut(s)	104, 399, 2130
HinfI	GANTC	9 cut(s)	127, 406, 1128, 1148, 1156, 1328, 1650, 2374, 2392
HpaII	CCGG	4 cut(s)	291, 310, 539, 1933
HphI	GGTGA	6 cut(s)	338, 436, 1165, 1262, 1412, 2441
Hpy166II	GTNNAC	5 cut(s)	193, 271, 938, 1279, 1682
Hpy188I	TCNGA	7 cut(s)	159, 558, 1425, 1473, 1635, 1852, 2242
Hpy188III	TCNNGA	9 cut(s)	110, 182, 217, 319, 539, 628, 1106, 1514, 2274
Hpy8I	GTNNAC	5 cut(s)	193, 271, 938, 1279, 1682
HpyAV	CCTTC	8 cut(s)	414, 562, 706, 824, 896, 1636, 1943, 2015
HpyCH4III	ACNGT	4 cut(s)	856, 1223, 1356, 1967
HpyF10VI	GCNNNNNNNGC	8 cut(s)	578, 1319, 1379, 1622, 1916, 1933, 1991, 2423
HpyF3I	CTNAG	2 cut(s)	2366, 2451
HspAI	GCGC	3 cut(s)	893, 1217, 1925
Kpn2I	TCCGGA	1 cut(s)	538
Ksp22I	TGATCA	1 cut(s)	744
Kzo9I	GATC	8 cut(s)	159, 369, 744, 1345, 1578, 1881, 2183, 2242
LguI	GCTCTTC	1 cut(s)	288
LmnI	GCTCC	1 cut(s)	2029
Lsp1109I	GCAGC	4 cut(s)	240, 439, 1360, 2397
MabI	ACCWGGT	1 cut(s)	1557
MaeI	CTAG	7 cut(s)	365, 503, 660, 861, 896, 2012, 2225
MaeIII	GTNAC	9 cut(s)	850, 1048, 1153, 1561, 1811, 1860, 1889, 1969, 2429
MalI	GATC	8 cut(s)	161, 371, 746, 1347, 1580, 1883, 2185, 2244
MboI	GATC	8 cut(s)	159, 369, 744, 1345, 1578, 1881, 2183, 2242
MfeI	CAATTG	1 cut(s)	1773
MflI	RGATCY	2 cut(s)	159, 1345
MhlI	GDGCHC	3 cut(s)	237, 283, 2082
MlsI	TGGCCA	1 cut(s)	1608
MluNI	TGGCCA	1 cut(s)	1608
MlyI	GAGTC	3 cut(s)	1122, 1142, 1150
MmeI	TCCRAC	2 cut(s)	442, 2460
Mox20I	TGGCCA	1 cut(s)	1608
Mph1103I	ATGCAT	4 cut(s)	522, 922, 1996, 2302
MroI	TCCGGA	1 cut(s)	538
MroXI	GAANNNNTTC	2 cut(s)	1415, 1617
MscI	TGGCCA	1 cut(s)	1608
MseI	TTAA	4 cut(s)	1686, 1940, 2097, 2348
MslI	CAYNNNNRTG	5 cut(s)	206, 525, 618, 1398, 1700
Msp20I	TGGCCA	1 cut(s)	1608
MspA1I	CMGCKG	1 cut(s)	2388
MspCI	CTTAAG	1 cut(s)	1685
MspI	CCGG	4 cut(s)	291, 310, 539, 1933
MspR9I	CCNGG	3 cut(s)	310, 1559, 2379
MunI	CAATTG	1 cut(s)	1773
Mva1269I	GAATGC	1 cut(s)	1750
MvaI	CCWGG	2 cut(s)	1559, 2379
MwoI	GCNNNNNNNGC	8 cut(s)	578, 1319, 1379, 1622, 1916, 1933, 1991, 2423
NciI	CCSGG	1 cut(s)	310
NdeI	CATATG	2 cut(s)	207, 2302
NdeII	GATC	8 cut(s)	159, 369, 744, 1345, 1578, 1881, 2183, 2242
NlaIV	GGNNCC	2 cut(s)	235, 555
NmuCI	GTSAC	4 cut(s)	850, 1153, 1561, 2429
NsiI	ATGCAT	4 cut(s)	522, 922, 1996, 2302
NspI	RCATGY	2 cut(s)	920, 1998
NspV	TTCGAA	2 cut(s)	404, 1326
PaeI	GCATGC	1 cut(s)	920
PceI	AGGCCT	1 cut(s)	1625
PciSI	GCTCTTC	1 cut(s)	288
PcsI	WCGNNNNNNNCGW	1 cut(s)	384
PctI	GAATGC	1 cut(s)	1750
PdmI	GAANNNNTTC	2 cut(s)	1415, 1617
PfeI	GAWTC	6 cut(s)	127, 406, 1328, 1650, 2374, 2392
PflFI	GACNNNGTC	1 cut(s)	856
PfoI	TCCNGGA	1 cut(s)	2377
PkrI	GCNGC	5 cut(s)	255, 454, 1118, 1375, 2387
PleI	GAGTC	3 cut(s)	1122, 1142, 1150
PpsI	GAGTC	3 cut(s)	1122, 1142, 1150
PsiI	TTATAA	1 cut(s)	974
Psp124BI	GAGCTC	1 cut(s)	283
Psp6I	CCWGG	2 cut(s)	1557, 2377
PspGI	CCWGG	2 cut(s)	1557, 2377
PspN4I	GGNNCC	2 cut(s)	235, 555
PspOMI	GGGCCC	1 cut(s)	233
PspPI	GGNCC	4 cut(s)	211, 233, 234, 2362
PstI	CTGCAG	1 cut(s)	457
PstNI	CAGNNNCTG	1 cut(s)	2450
PsuI	RGATCY	2 cut(s)	159, 1345
PsyI	GACNNNGTC	1 cut(s)	856
PvuII	CAGCTG	1 cut(s)	2388
RsaI	GTAC	3 cut(s)	350, 1353, 1683
RsaNI	GTAC	3 cut(s)	349, 1352, 1682
RseI	CAYNNNNRTG	5 cut(s)	206, 525, 618, 1398, 1700
SacI	GAGCTC	1 cut(s)	283
SapI	GCTCTTC	1 cut(s)	288
SaqAI	TTAA	4 cut(s)	1686, 1940, 2097, 2348
SatI	GCNGC	5 cut(s)	254, 453, 1117, 1374, 2386
Sau3AI	GATC	8 cut(s)	159, 369, 744, 1345, 1578, 1881, 2183, 2242
Sau96I	GGNCC	4 cut(s)	211, 233, 234, 2362
SchI	GAGTC	3 cut(s)	1122, 1142, 1150
ScrFI	CCNGG	3 cut(s)	310, 1559, 2379
SduI	GDGCHC	3 cut(s)	237, 283, 2082
SexAI	ACCWGGT	1 cut(s)	1557
SfcI	CTRYAG	1 cut(s)	453
SfuI	TTCGAA	2 cut(s)	404, 1326
SinI	GGWCC	1 cut(s)	211
SmiMI	CAYNNNNRTG	5 cut(s)	206, 525, 618, 1398, 1700
SmlI	CTYRAG	5 cut(s)	215, 1138, 1244, 1512, 1685
SmoI	CTYRAG	5 cut(s)	215, 1138, 1244, 1512, 1685
SpeI	ACTAGT	1 cut(s)	364
SphI	GCATGC	1 cut(s)	920
SseBI	AGGCCT	1 cut(s)	1625
SsiI	CCGC	4 cut(s)	576, 1117, 1592, 1646
SspMI	CTAG	7 cut(s)	365, 503, 660, 861, 896, 2012, 2225
SstI	GAGCTC	1 cut(s)	283
StuI	AGGCCT	1 cut(s)	1625
StyD4I	CCNGG	3 cut(s)	308, 1557, 2377
StyI	CCWWGG	2 cut(s)	987, 1540
TaaI	ACNGT	4 cut(s)	856, 1223, 1356, 1967
TaqI	TCGA	5 cut(s)	404, 758, 1131, 1326, 1548
TatI	WGTACW	3 cut(s)	348, 1351, 1681
TauI	GCSGC	1 cut(s)	1119
TfiI	GAWTC	6 cut(s)	127, 406, 1328, 1650, 2374, 2392
Tru1I	TTAA	4 cut(s)	1686, 1940, 2097, 2348
Tru9I	TTAA	4 cut(s)	1686, 1940, 2097, 2348
TscAI	CASTG	2 cut(s)	1226, 1972
TseFI	GTSAC	4 cut(s)	850, 1153, 1561, 2429
TseI	GCWGC	4 cut(s)	253, 452, 1373, 2385
Tsp45I	GTSAC	4 cut(s)	850, 1153, 1561, 2429
TspDTI	ATGAA	8 cut(s)	36, 537, 602, 738, 1046, 1626, 2142, 2366
TspRI	CASTG	2 cut(s)	1226, 1972
Tth111I	GACNNNGTC	1 cut(s)	856
Vha464I	CTTAAG	1 cut(s)	1685
VpaK11BI	GGWCC	1 cut(s)	211
XapI	RAATTY	6 cut(s)	177, 754, 1057, 1195, 1202, 2269
XceI	RCATGY	2 cut(s)	920, 1998
XmiI	GTMKAC	3 cut(s)	192, 270, 1278
XmnI	GAANNNNTTC	2 cut(s)	1415, 1617
XspI	CTAG	7 cut(s)	365, 503, 660, 861, 896, 2012, 2225
Zsp2I	ATGCAT	4 cut(s)	522, 922, 1996, 2302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.