Peptidogalycan biosysnthesis/recognition
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr2g0125801 RchiOBHm_Chr5g0039701 |
| rosa_multiflora | Rmu_sc0002322.1_g000063 Rmu_sc0005446.1_g000007 |
| rosa_roxburghii | Rroxscaffold_2G00133520 Rroxscaffold_3G00239770 Rroxscaffold_7G00192690 |
| rosa_rugosa | Rorug02G0042900 Rorug02G0042900 Rorug02G0043000 Rorug05G0516600 Rorug06G0090500 Rorug06G0295400 |
| rosa_samantha | Rh7BG322900 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AflIII | ACRYGT | 1 cut(s) | 25 |
| AgsI | TTSAA | 4 cut(s) | 33, 53, 74, 236 |
| AluBI | AGCT | 2 cut(s) | 239, 253 |
| AluI | AGCT | 2 cut(s) | 239, 253 |
| Alw26I | GTCTC | 1 cut(s) | 107 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 256 |
| AsuHPI | GGTGA | 2 cut(s) | 16, 133 |
| BauI | CACGAG | 1 cut(s) | 222 |
| BccI | CCATC | 1 cut(s) | 164 |
| BcoDI | GTCTC | 1 cut(s) | 107 |
| BfaI | CTAG | 1 cut(s) | 129 |
| BfmI | CTRYAG | 1 cut(s) | 257 |
| BmsI | GCATC | 2 cut(s) | 164, 175 |
| BseGI | GGATG | 3 cut(s) | 175, 179, 190 |
| BseMII | CTCAG | 3 cut(s) | 57, 129, 153 |
| BsmAI | GTCTC | 1 cut(s) | 107 |
| BspCNI | CTCAG | 3 cut(s) | 58, 128, 154 |
| BspMAI | CTGCAG | 1 cut(s) | 261 |
| BssSI | CACGAG | 1 cut(s) | 222 |
| Bst2BI | CACGAG | 1 cut(s) | 222 |
| BstDEI | CTNAG | 3 cut(s) | 66, 115, 162 |
| BstF5I | GGATG | 3 cut(s) | 175, 179, 190 |
| BstMAI | GTCTC | 1 cut(s) | 107 |
| BstNSI | RCATGY | 1 cut(s) | 29 |
| BstSFI | CTRYAG | 1 cut(s) | 257 |
| BtsCI | GGATG | 3 cut(s) | 175, 179, 190 |
| BtsIMutI | CAGTG | 1 cut(s) | 159 |
| CaiI | CAGNNNCTG | 1 cut(s) | 256 |
| CviAII | CATG | 2 cut(s) | 26, 151 |
| CviJI | RGCY | 2 cut(s) | 239, 253 |
| CviKI_1 | RGCY | 2 cut(s) | 239, 253 |
| DdeI | CTNAG | 3 cut(s) | 66, 115, 162 |
| Eco32I | GATATC | 1 cut(s) | 138 |
| EcoRV | GATATC | 1 cut(s) | 138 |
| FaeI | CATG | 2 cut(s) | 29, 154 |
| FaiI | YATR | 3 cut(s) | 14, 27, 152 |
| FatI | CATG | 2 cut(s) | 25, 150 |
| FokI | GGATG | 3 cut(s) | 182, 186, 197 |
| FspBI | CTAG | 1 cut(s) | 129 |
| Hin1II | CATG | 2 cut(s) | 29, 154 |
| HindIII | AAGCTT | 1 cut(s) | 237 |
| HinfI | GANTC | 1 cut(s) | 74 |
| HphI | GGTGA | 2 cut(s) | 16, 133 |
| Hpy166II | GTNNAC | 1 cut(s) | 159 |
| Hpy188I | TCNGA | 1 cut(s) | 118 |
| Hpy188III | TCNNGA | 1 cut(s) | 233 |
| Hpy8I | GTNNAC | 1 cut(s) | 159 |
| HpyAV | CCTTC | 1 cut(s) | 66 |
| HpyCH4V | TGCA | 6 cut(s) | 12, 62, 154, 177, 227, 259 |
| HpyF3I | CTNAG | 3 cut(s) | 66, 115, 162 |
| Hsp92II | CATG | 2 cut(s) | 29, 154 |
| LpnPI | CCDG | 1 cut(s) | 93 |
| LweI | GCATC | 2 cut(s) | 164, 175 |
| MaeI | CTAG | 1 cut(s) | 129 |
| MluCI | AATT | 1 cut(s) | 178 |
| MnlI | CCTC | 3 cut(s) | 112, 159, 202 |
| NlaIII | CATG | 2 cut(s) | 29, 154 |
| NspI | RCATGY | 1 cut(s) | 29 |
| PciI | ACATGT | 1 cut(s) | 25 |
| PfeI | GAWTC | 1 cut(s) | 74 |
| PscI | ACATGT | 1 cut(s) | 25 |
| PstI | CTGCAG | 1 cut(s) | 261 |
| PstNI | CAGNNNCTG | 1 cut(s) | 256 |
| SetI | ASST | 6 cut(s) | 58, 123, 130, 194, 241, 255 |
| SfaNI | GCATC | 2 cut(s) | 164, 175 |
| SfcI | CTRYAG | 1 cut(s) | 257 |
| Sse9I | AATT | 1 cut(s) | 178 |
| SspMI | CTAG | 1 cut(s) | 129 |
| TasI | AATT | 1 cut(s) | 178 |
| TfiI | GAWTC | 1 cut(s) | 74 |
| TscAI | CASTG | 1 cut(s) | 166 |
| TspRI | CASTG | 1 cut(s) | 166 |
| XceI | RCATGY | 1 cut(s) | 29 |
| XspI | CTAG | 1 cut(s) | 129 |