Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0016980

Physical Location & Seq

Genomic Coordinates Reverse (-)

70899586 .. 70901944

Gene Structure 2359 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00133520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 192 bp

ATGAATGGGCAGGTTGTAAAGCAGGTGTATGTTAAGAACTCCTTGTTTCCACATTCTCTTTCTTCTTGTCTCAAATTGGGCAAAATTGAAGATTATTTTCAGTCATATTTCAGTACAGGGCATATCCATACTTCTACTGAACTTTCCCGTTATGTTGAGCCATTGAAGGAACCTCAAAATACAACAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006084 GO:0006085 GO:0006139 GO:0006163 GO:0006164 GO:0006195 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009154 GO:0009165 GO:0009166 GO:0009259 GO:0009260 GO:0009261 GO:0009893 GO:0009987 GO:0010565 GO:0016829 GO:0016830 GO:0016831 GO:0018130 GO:0019216 GO:0019217 GO:0019222 GO:0019438 GO:0019439 GO:0019637 GO:0019693 GO:0031323 GO:0031325 GO:0031974 GO:0033865 GO:0033866 GO:0033869 GO:0033875 GO:0034030 GO:0034031 GO:0034032 GO:0034033 GO:0034034 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0035383 GO:0035384 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044272 GO:0044273 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045834 GO:0045923 GO:0046320 GO:0046321 GO:0046390 GO:0046434 GO:0046483 GO:0046700 GO:0048518 GO:0048522 GO:0050080 GO:0050789 GO:0050794 GO:0051186 GO:0051188 GO:0055086 GO:0062012 GO:0062013 GO:0065007 GO:0070013 GO:0071616 GO:0071704 GO:0072521 GO:0072522 GO:0072523 GO:0080090 GO:0090407 GO:1901135 GO:1901136 GO:1901137 GO:1901292 GO:1901293 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576 GO:2001293 GO:2001294

KEGG Pathways

Metabolic & Signaling

ko00410 ko00640 ko01100 ko04146 ko04152 map00410 map00640 map01100 map04146 map04152

Pfam Domains

Protein Families

MCD MCD_N

Protein Analysis

63

Amino Acids

7.24

Weight (kDa)

6.82

Isoelectric Point (pI)

53.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016980)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0125801 RchiOBHm_Chr5g0039701
rosa_multiflora	Rmu_sc0002322.1_g000063 Rmu_sc0005446.1_g000007
rosa_roxburghii	Rroxscaffold_2G00133520 Rroxscaffold_3G00239770 Rroxscaffold_7G00192690
rosa_rugosa	Rorug02G0042900 Rorug02G0042900 Rorug02G0043000 Rorug05G0516600 Rorug06G0090500 Rorug06G0295400
rosa_samantha	Rh7BG322900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	13
Acc36I	ACCTGC	1 cut(s)	13
AfaI	GTAC	1 cut(s)	115
AgsI	TTSAA	2 cut(s)	89, 166
Alw26I	GTCTC	1 cut(s)	74
BcoDI	GTCTC	1 cut(s)	74
BfuAI	ACCTGC	1 cut(s)	13
BmiI	GGNNCC	1 cut(s)	171
BsmAI	GTCTC	1 cut(s)	74
BspLI	GGNNCC	1 cut(s)	171
BspMI	ACCTGC	1 cut(s)	13
BstMAI	GTCTC	1 cut(s)	74
BveI	ACCTGC	1 cut(s)	13
Csp6I	GTAC	1 cut(s)	114
CviJI	RGCY	1 cut(s)	160
CviKI_1	RGCY	1 cut(s)	160
CviQI	GTAC	1 cut(s)	114
FaiI	YATR	5 cut(s)	30, 106, 123, 129, 153
FalI	AAGNNNNNCTT	2 cut(s)	26, 58
HpyAV	CCTTC	1 cut(s)	160
LpnPI	CCDG	2 cut(s)	8, 102
MboII	GAAGA	2 cut(s)	54, 101
MluCI	AATT	2 cut(s)	74, 84
MnlI	CCTC	1 cut(s)	183
MseI	TTAA	1 cut(s)	33
NlaIV	GGNNCC	1 cut(s)	171
PaqCI	CACCTGC	1 cut(s)	13
PspN4I	GGNNCC	1 cut(s)	171
RsaI	GTAC	1 cut(s)	115
RsaNI	GTAC	1 cut(s)	114
SaqAI	TTAA	1 cut(s)	33
SetI	ASST	3 cut(s)	15, 27, 175
SgeI	CNNG	6 cut(s)	23, 35, 55, 78, 129, 159
Sse9I	AATT	2 cut(s)	74, 84
TasI	AATT	2 cut(s)	74, 84
TatI	WGTACW	1 cut(s)	113
Tru1I	TTAA	1 cut(s)	33
Tru9I	TTAA	1 cut(s)	33
TspDTI	ATGAA	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.