Rorug05G0516600
NAC Family

Inactive TPR repeat-containing thioredoxin TTL3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0016980
Physical Location & Seq
Forward (+)
70097366 .. 70100172
2807 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0516600.1

Sequence Viewer

Length: 1377 bp
ATGGGAACGGTGAAGCTCGAGCCAGTCGCTCCTTGCCACCTGGTGGCGCTGCCGTACCCAGGCCGAGGCCACATCAACCCCATGATGAACCTCTGCAAGCTTCTCGCTTCTGAAAAACACAACCTCCTCATCACCTTCGTTGTCACCGAAGAGTGGCACGGCTTCATCGGATCCGACCCGAAACCTGACAACATCCGGTTCGCCACGGTGCCCAACGTCATACCCTCCGAACTCGACCGGGCCAAGGACTTTCCGGGATTCTTGGAGGCCGTGAGCACCAAGCTGCAAGAGCCGTTCGAGCTACTTCTGGACCGGCTCGAGCCGGAGGTAAGCGTTATAGTTGCGGATCCATTTGTGGTTTGGGCCGTGAGGGTTGGGAATAAGAGGAATATTCCGGTGGCTTCGCTTTGGCCGATGTCGGCGTCTGTGTTCTCGACGTTTCATCACTTCGAGCTGCTCAAAGAAAATGGCCACTTCCCTGCTGATGTGTCAGTCCGTGGAGATGAAGTAATAAATTACATCCCCGGAATCTCCACCACCCGCATGGCAGATCTTCCCACTGTATTGTACGACGACGTTCAACAAGTCCTCAACAGAGCCCTTGAAGCTGTTTCCAGCACATACAAAGCACAATACCTCTTATCAACTTCATTCTACGAGCTTGAGCCCCATGCCTTTGACACACTGAGAGCCAAACTGTCTTTGCCTGTCTACTCTATTGGCCCAAGCATCCCACACTTCGAGCTTTCAAAAACTGCTCATGACAATGAACTAAACTACCTGCACTGGCTAGACTCTCAACCTAAAAGTTCTGTCATGTACATTTCACTTGGGAGCTTCTTGTCTGTTTCAGATGCCCAAATGGACGAAATCATTGCCGGGGTGAAGAACAGCGGTGTTAGATTCTTGTGGGTGGTGCGTGGGGATGCATCTAAGCTTAAAGATGGTGTTGGTGACATGGGCTTGGTGGTGCCTTGGTGTGACCAATTAAGGGTGTTGTGTCACTCTTCCATTGGAGGGTTTTGGTCGCATTGTGGTTGGAACTCAACTCAAGAAGCTGTTTATGCGGGTCTTCCGGTTCTTACTTGCCCTATATTTTGGGACCAAATCCCAAATGGGAAGCAAATTGTGCAGGATTGGAAGATTGGGTATAGGGTGAAGAAGAAGAAAGTTAGAGGTGGAGACTTGGTGACCAGAGAGGAGATTGCAGAGCTTGTGCAGAGGTTTATGGACGTCGAAAGCAATGAGGGGAAGGAGATGAGGAAAAGAGCAAAACAACTTCAAGAGACTTGTCAAGGAGCAATTGCAAAGGGTGGTTCTTCTGACTCCAACCTGGATGCTTTTATTAAGGATATTTCACAAGGTTATAGCCCTTAA

Protein Analysis

458

Amino Acids

51.06

Weight (kDa)

5.84

Isoelectric Point (pI)

36.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 255 - 382 2.2e-17 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1236
Acc36I ACCTGC 1 cut(s) 789
AccB1I GGYRCC 2 cut(s) 208, 970
AccB7I CCANNNNNTGG 1 cut(s) 43
AccI GTMKAC 1 cut(s) 711
AciI CCGC 4 cut(s) 344, 541, 894, 1067
AclWI GGATC 4 cut(s) 165, 178, 341, 354
AcoI YGGCCR 2 cut(s) 410, 469
AcyI GRCGYC 2 cut(s) 422, 1233
AdeI CACNNNGTG 1 cut(s) 43
AfaI GTAC 3 cut(s) 56, 569, 821
AfiI CCNNNNNNNGG 7 cut(s) 43, 59, 65, 153, 244, 991, 1017
AgsI TTSAA 4 cut(s) 581, 605, 750, 1283
AjnI CCWGG 3 cut(s) 39, 58, 1332
Alw21I GWGCWC 1 cut(s) 278
Alw26I GTCTC 2 cut(s) 1176, 1280
AlwI GGATC 4 cut(s) 165, 178, 341, 354
Ama87I CYCGRG 2 cut(s) 17, 317
AoxI GGCC 8 cut(s) 61, 67, 240, 267, 363, 410, 469, 721
ApeKI GCWGC 3 cut(s) 49, 283, 454
AspLEI GCGC 1 cut(s) 49
AspS9I GGNCC 5 cut(s) 240, 310, 363, 722, 1102
AsuC2I CCSGG 4 cut(s) 239, 255, 525, 880
AsuHPI GGTGA 7 cut(s) 22, 124, 136, 895, 965, 1168, 1201
AvaI CYCGRG 2 cut(s) 17, 317
AvaII GGWCC 2 cut(s) 310, 1102
BaeGI GKGCMC 1 cut(s) 213
BalI TGGCCA 1 cut(s) 471
BamHI GGATCC 2 cut(s) 170, 346
BanI GGYRCC 2 cut(s) 208, 970
BanII GRGCYC 2 cut(s) 601, 669
BbsI GAAGAC 1 cut(s) 1064
Bbv12I GWGCWC 1 cut(s) 278
BbvI GCAGC 3 cut(s) 36, 270, 441
BccI CCATC 1 cut(s) 938
BceAI ACGGC 5 cut(s) 37, 175, 254, 277, 350
BcgI CGANNNNNNTGC 4 cut(s) 85, 119, 857, 891
BciT130I CCWGG 3 cut(s) 41, 60, 1334
BcnI CCSGG 4 cut(s) 239, 255, 525, 880
BcoDI GTCTC 2 cut(s) 1176, 1280
BfaI CTAG 1 cut(s) 791
BfoI RGCGCY 1 cut(s) 50
BfuAI ACCTGC 1 cut(s) 789
BglII AGATCT 1 cut(s) 550
BisI GCNGC 3 cut(s) 50, 284, 455
BlsI GCNGC 3 cut(s) 51, 285, 456
Bme1390I CCNGG 7 cut(s) 41, 60, 239, 255, 525, 880, 1334
Bme18I GGWCC 2 cut(s) 310, 1102
BmeT110I CYCGRG 2 cut(s) 17, 317
BmgT120I GGNCC 5 cut(s) 240, 310, 363, 722, 1102
BmiI GGNNCC 5 cut(s) 172, 210, 348, 972, 1103
BmrFI CCNGG 7 cut(s) 41, 60, 239, 255, 525, 880, 1334
BmsI GCATC 5 cut(s) 738, 844, 916, 938, 1327
BpiI GAAGAC 1 cut(s) 1064
BpuEI CTTGAG 2 cut(s) 683, 1035
BpuMI CCSGG 4 cut(s) 239, 255, 525, 880
BsaHI GRCGYC 2 cut(s) 422, 1233
BsaJI CCNNGG 8 cut(s) 58, 64, 204, 243, 496, 523, 879, 974
BsaWI WCCGGW 3 cut(s) 195, 394, 1075
BsaXI ACNNNNNCTCC 6 cut(s) 108, 138, 492, 522, 1173, 1203
Bsc4I CCNNNNNNNGG 7 cut(s) 43, 59, 65, 153, 244, 991, 1017
Bse118I RCCGGY 1 cut(s) 312
Bse1I ACTGG 2 cut(s) 23, 791
Bse3DI GCAATG 2 cut(s) 873, 1249
BseBI CCWGG 3 cut(s) 41, 60, 1334
BseDI CCNNGG 8 cut(s) 58, 64, 204, 243, 496, 523, 879, 974
BseGI GGATG 5 cut(s) 192, 519, 729, 931, 1342
BseLI CCNNNNNNNGG 7 cut(s) 43, 59, 65, 153, 244, 991, 1017
BseMI GCAATG 2 cut(s) 873, 1249
BseMII CTCAG 1 cut(s) 677
BseNI ACTGG 2 cut(s) 23, 791
BseRI GAGGAG 2 cut(s) 116, 1214
BseSI GKGCMC 1 cut(s) 213
BseXI GCAGC 3 cut(s) 36, 270, 441
BsgI GTGCAG 3 cut(s) 767, 1151, 1238
Bsh1285I CGRYCG 1 cut(s) 238
BshFI GGCC 8 cut(s) 63, 69, 242, 269, 365, 412, 471, 723
BshNI GGYRCC 2 cut(s) 208, 970
BsiEI CGRYCG 1 cut(s) 238
BsiHKAI GWGCWC 1 cut(s) 278
BsiHKCI CYCGRG 2 cut(s) 17, 317
BsiSI CCGG 9 cut(s) 196, 238, 254, 313, 323, 395, 525, 879, 1076
BslFI GGGAC 1 cut(s) 1115
BslI CCNNNNNNNGG 7 cut(s) 43, 59, 65, 153, 244, 991, 1017
BsmAI GTCTC 2 cut(s) 1176, 1280
BsmFI GGGAC 1 cut(s) 1115
BsnI GGCC 8 cut(s) 63, 69, 242, 269, 365, 412, 471, 723
BsoBI CYCGRG 2 cut(s) 17, 317
Bsp1286I GDGCHC 4 cut(s) 213, 278, 601, 669
Bsp1407I TGTACA 1 cut(s) 819
Bsp143I GATC 3 cut(s) 170, 346, 550
BspACI CCGC 4 cut(s) 344, 541, 894, 1067
BspANI GGCC 8 cut(s) 63, 69, 242, 269, 365, 412, 471, 723
BspCNI CTCAG 1 cut(s) 678
BspHI TCATGA 1 cut(s) 760
BspLI GGNNCC 5 cut(s) 172, 210, 348, 972, 1103
BspMI ACCTGC 1 cut(s) 789
BspPI GGATC 4 cut(s) 165, 178, 341, 354
BspT107I GGYRCC 2 cut(s) 208, 970
BsrDI GCAATG 2 cut(s) 873, 1249
BsrFI RCCGGY 1 cut(s) 312
BsrGI TGTACA 1 cut(s) 819
BsrI ACTGG 2 cut(s) 23, 791
BssAI RCCGGY 1 cut(s) 312
BssECI CCNNGG 8 cut(s) 58, 64, 204, 243, 496, 523, 879, 974
BssMI GATC 3 cut(s) 170, 346, 550
BssNI GRCGYC 2 cut(s) 422, 1233
BssT1I CCWWGG 2 cut(s) 243, 974
Bst2UI CCWGG 3 cut(s) 41, 60, 1334
Bst4CI ACNGT 4 cut(s) 10, 208, 562, 699
Bst6I CTCTTC 2 cut(s) 144, 1012
BstACI GRCGYC 2 cut(s) 422, 1233
BstAPI GCANNNNNTGC 1 cut(s) 1129
BstAUI TGTACA 1 cut(s) 819
BstC8I GCNNGC 1 cut(s) 98
BstDEI CTNAG 2 cut(s) 686, 933
BstDSI CCRYGG 2 cut(s) 204, 496
BstEII GGTNACC 1 cut(s) 1189
BstF5I GGATG 5 cut(s) 192, 519, 729, 931, 1342
BstH2I RGCGCY 1 cut(s) 50
BstHHI GCGC 1 cut(s) 49
BstKTI GATC 3 cut(s) 173, 349, 553
BstMAI GTCTC 2 cut(s) 1176, 1280
BstMBI GATC 3 cut(s) 170, 346, 550
BstMCI CGRYCG 1 cut(s) 238
BstMWI GCNNNNNNNGC 5 cut(s) 289, 298, 605, 1064, 1129
BstNI CCWGG 3 cut(s) 41, 60, 1334
BstPI GGTNACC 1 cut(s) 1189
BstSCI CCNGG 7 cut(s) 39, 58, 237, 253, 523, 878, 1332
BstSLI GKGCMC 1 cut(s) 213
BstV1I GCAGC 3 cut(s) 36, 270, 441
BstV2I GAAGAC 1 cut(s) 1064
BstX2I RGATCY 3 cut(s) 170, 346, 550
BstXI CCANNNNNNTGG 1 cut(s) 544
BstYI RGATCY 3 cut(s) 170, 346, 550
BsuRI GGCC 8 cut(s) 63, 69, 242, 269, 365, 412, 471, 723
BtgI CCRYGG 2 cut(s) 204, 496
BtsCI GGATG 5 cut(s) 192, 519, 729, 931, 1342
BtsIMutI CAGTG 3 cut(s) 558, 683, 784
BveI ACCTGC 1 cut(s) 789
Cac8I GCNNGC 1 cut(s) 98
CciI TCATGA 1 cut(s) 760
CfoI GCGC 1 cut(s) 49
Cfr10I RCCGGY 1 cut(s) 312
Cfr13I GGNCC 5 cut(s) 240, 310, 363, 722, 1102
CseI GACGC 1 cut(s) 411
CsiI ACCWGGT 1 cut(s) 39
Csp6I GTAC 3 cut(s) 55, 568, 820
CviAII CATG 6 cut(s) 82, 544, 671, 761, 817, 958
CviQI GTAC 3 cut(s) 55, 568, 820
DdeI CTNAG 2 cut(s) 686, 933
DpnI GATC 3 cut(s) 172, 348, 552
DpnII GATC 3 cut(s) 170, 346, 550
DraIII CACNNNGTG 1 cut(s) 43
EaeI YGGCCR 2 cut(s) 410, 469
Eam1104I CTCTTC 2 cut(s) 144, 1012
EarI CTCTTC 2 cut(s) 144, 1012
Eco130I CCWWGG 2 cut(s) 243, 974
Eco24I GRGCYC 2 cut(s) 601, 669
Eco47I GGWCC 2 cut(s) 310, 1102
Eco88I CYCGRG 2 cut(s) 17, 317
Eco91I GGTNACC 1 cut(s) 1189
EcoO65I GGTNACC 1 cut(s) 1189
EcoRII CCWGG 3 cut(s) 39, 58, 1332
EcoT14I CCWWGG 2 cut(s) 243, 974
EcoT22I ATGCAT 1 cut(s) 931
EcoT38I GRGCYC 2 cut(s) 601, 669
ErhI CCWWGG 2 cut(s) 243, 974
FaeI CATG 6 cut(s) 85, 547, 674, 764, 820, 961
FaqI GGGAC 1 cut(s) 1115
FatI CATG 6 cut(s) 81, 543, 670, 760, 816, 957
FauI CCCGC 2 cut(s) 548, 1060
FblI GTMKAC 1 cut(s) 711
Fnu4HI GCNGC 3 cut(s) 50, 284, 455
FokI GGATG 5 cut(s) 179, 506, 716, 938, 1349
FriOI GRGCYC 2 cut(s) 601, 669
Fsp4HI GCNGC 3 cut(s) 50, 284, 455
FspBI CTAG 1 cut(s) 791
GlaI GCGC 1 cut(s) 48
GluI GCNGC 3 cut(s) 50, 284, 455
HaeII RGCGCY 1 cut(s) 50
HaeIII GGCC 8 cut(s) 63, 69, 242, 269, 365, 412, 471, 723
HapII CCGG 9 cut(s) 196, 238, 254, 313, 323, 395, 525, 879, 1076
HgaI GACGC 1 cut(s) 411
HhaI GCGC 1 cut(s) 49
Hin1I GRCGYC 2 cut(s) 422, 1233
Hin1II CATG 6 cut(s) 85, 547, 674, 764, 820, 961
Hin6I GCGC 1 cut(s) 47
HinP1I GCGC 1 cut(s) 47
HindIII AAGCTT 2 cut(s) 98, 935
HinfI GANTC 5 cut(s) 258, 528, 794, 903, 1325
HpaII CCGG 9 cut(s) 196, 238, 254, 313, 323, 395, 525, 879, 1076
HphI GGTGA 7 cut(s) 22, 124, 136, 895, 965, 1168, 1201
Hpy166II GTNNAC 1 cut(s) 712
Hpy188I TCNGA 6 cut(s) 112, 170, 175, 229, 853, 1324
Hpy188III TCNNGA 5 cut(s) 308, 433, 761, 1052, 1283
Hpy8I GTNNAC 1 cut(s) 712
Hpy99I CGWCG 4 cut(s) 439, 575, 578, 1238
HpyAV CCTTC 2 cut(s) 145, 1246
HpyCH4III ACNGT 4 cut(s) 10, 208, 562, 699
HpyCH4IV ACGT 4 cut(s) 216, 437, 576, 1233
HpyCH4V TGCA 8 cut(s) 96, 286, 784, 929, 1132, 1208, 1219, 1307
HpyF10VI GCNNNNNNNGC 5 cut(s) 289, 298, 605, 1064, 1129
HpyF3I CTNAG 2 cut(s) 686, 933
HpySE526I ACGT 4 cut(s) 216, 437, 576, 1233
Hsp92I GRCGYC 2 cut(s) 422, 1233
Hsp92II CATG 6 cut(s) 85, 547, 674, 764, 820, 961
HspAI GCGC 1 cut(s) 47
Kzo9I GATC 3 cut(s) 170, 346, 550
LmnI GCTCC 3 cut(s) 34, 834, 1298
Lsp1109I GCAGC 3 cut(s) 36, 270, 441
LweI GCATC 5 cut(s) 738, 844, 916, 938, 1327
MabI ACCWGGT 1 cut(s) 39
MaeI CTAG 1 cut(s) 791
MaeII ACGT 4 cut(s) 216, 437, 576, 1233
MaeIII GTNAC 5 cut(s) 142, 953, 980, 1001, 1189
MalI GATC 3 cut(s) 172, 348, 552
MboI GATC 3 cut(s) 170, 346, 550
MfeI CAATTG 1 cut(s) 1302
MflI RGATCY 3 cut(s) 170, 346, 550
MhlI GDGCHC 4 cut(s) 213, 278, 601, 669
MlsI TGGCCA 1 cut(s) 471
MluCI AATT 4 cut(s) 514, 986, 1125, 1302
MluNI TGGCCA 1 cut(s) 471
MlyI GAGTC 2 cut(s) 788, 1319
MmeI TCCRAC 3 cut(s) 198, 1019, 1353
Mox20I TGGCCA 1 cut(s) 471
Mph1103I ATGCAT 1 cut(s) 931
MscI TGGCCA 1 cut(s) 471
MseI TTAA 4 cut(s) 939, 989, 1347, 1375
MslI CAYNNNNRTG 2 cut(s) 542, 765
Msp20I TGGCCA 1 cut(s) 471
MspA1I CMGCKG 1 cut(s) 894
MspI CCGG 9 cut(s) 196, 238, 254, 313, 323, 395, 525, 879, 1076
MspR9I CCNGG 7 cut(s) 41, 60, 239, 255, 525, 880, 1334
MunI CAATTG 1 cut(s) 1302
MvaI CCWGG 3 cut(s) 41, 60, 1334
MwoI GCNNNNNNNGC 5 cut(s) 289, 298, 605, 1064, 1129
NciI CCSGG 4 cut(s) 239, 255, 525, 880
NdeII GATC 3 cut(s) 170, 346, 550
NlaIII CATG 6 cut(s) 85, 547, 674, 764, 820, 961
NlaIV GGNNCC 5 cut(s) 172, 210, 348, 972, 1103
NmeAIII GCCGAG 1 cut(s) 89
NmuCI GTSAC 5 cut(s) 142, 953, 980, 1001, 1189
NsiI ATGCAT 1 cut(s) 931
PaeR7I CTCGAG 2 cut(s) 17, 317
PagI TCATGA 1 cut(s) 760
PcsI WCGNNNNNNNCGW 2 cut(s) 144, 410
PfeI GAWTC 3 cut(s) 258, 528, 903
PflMI CCANNNNNTGG 1 cut(s) 43
PfoI TCCNGGA 1 cut(s) 253
PkrI GCNGC 3 cut(s) 51, 285, 456
PleI GAGTC 2 cut(s) 788, 1319
PpsI GAGTC 2 cut(s) 788, 1319
Psp6I CCWGG 3 cut(s) 39, 58, 1332
PspEI GGTNACC 1 cut(s) 1189
PspGI CCWGG 3 cut(s) 39, 58, 1332
PspN4I GGNNCC 5 cut(s) 172, 210, 348, 972, 1103
PspPI GGNCC 5 cut(s) 240, 310, 363, 722, 1102
PspXI VCTCGAGB 2 cut(s) 17, 317
PsuI RGATCY 3 cut(s) 170, 346, 550
RsaI GTAC 3 cut(s) 56, 569, 821
RsaNI GTAC 3 cut(s) 55, 568, 820
RseI CAYNNNNRTG 2 cut(s) 542, 765
SaqAI TTAA 4 cut(s) 939, 989, 1347, 1375
SatI GCNGC 3 cut(s) 50, 284, 455
Sau3AI GATC 3 cut(s) 170, 346, 550
Sau96I GGNCC 5 cut(s) 240, 310, 363, 722, 1102
SchI GAGTC 2 cut(s) 788, 1319
ScrFI CCNGG 7 cut(s) 41, 60, 239, 255, 525, 880, 1334
SduI GDGCHC 4 cut(s) 213, 278, 601, 669
SexAI ACCWGGT 1 cut(s) 39
SfaNI GCATC 5 cut(s) 738, 844, 916, 938, 1327
Sfr274I CTCGAG 2 cut(s) 17, 317
SinI GGWCC 2 cut(s) 310, 1102
SlaI CTCGAG 2 cut(s) 17, 317
SmiMI CAYNNNNRTG 2 cut(s) 542, 765
SmlI CTYRAG 4 cut(s) 17, 317, 662, 1050
SmoI CTYRAG 4 cut(s) 17, 317, 662, 1050
Sse9I AATT 4 cut(s) 514, 986, 1125, 1302
SsiI CCGC 4 cut(s) 344, 541, 894, 1067
SspI AATATT 1 cut(s) 391
SspMI CTAG 1 cut(s) 791
StyD4I CCNGG 7 cut(s) 39, 58, 237, 253, 523, 878, 1332
StyI CCWWGG 2 cut(s) 243, 974
TaaI ACNGT 4 cut(s) 10, 208, 562, 699
TaiI ACGT 4 cut(s) 219, 440, 579, 1236
TaqI TCGA 8 cut(s) 18, 234, 297, 318, 434, 450, 741, 1236
TasI AATT 4 cut(s) 514, 986, 1125, 1302
TatI WGTACW 1 cut(s) 819
TfiI GAWTC 3 cut(s) 258, 528, 903
Tru1I TTAA 4 cut(s) 939, 989, 1347, 1375
Tru9I TTAA 4 cut(s) 939, 989, 1347, 1375
TscAI CASTG 3 cut(s) 565, 690, 791
TseFI GTSAC 5 cut(s) 142, 953, 980, 1001, 1189
TseI GCWGC 3 cut(s) 49, 283, 454
Tsp45I GTSAC 5 cut(s) 142, 953, 980, 1001, 1189
TspDTI ATGAA 6 cut(s) 101, 154, 431, 519, 639, 783
TspGWI ACGGA 1 cut(s) 485
TspRI CASTG 3 cut(s) 565, 690, 791
Van91I CCANNNNNTGG 1 cut(s) 43
VpaK11BI GGWCC 2 cut(s) 310, 1102
XcmI CCANNNNNNNNNTGG 3 cut(s) 357, 541, 1112
XhoI CTCGAG 2 cut(s) 17, 317
XmiI GTMKAC 1 cut(s) 711
XspI CTAG 1 cut(s) 791
ZraI GACGTC 1 cut(s) 1234
Zsp2I ATGCAT 1 cut(s) 931
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.