Rmu_sc0005594.1_g000018
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005594.1
OG0004000
Physical Location & Seq
Reverse (-)
95718 .. 97450
1733 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 717 bp
atggggaagatgctggaagcctttcagagttgttttatggccaccatttcagagctgtctggtataaatgccgtcttatatttctccgtattcaaaagtgccagaagaccatcaggccttgcaaatggcttcataggaattgcaactttatcaggatctgttgtcgcagtggctttgatggataaagtaggaaggaaggtgctactgttatgtagcttctttggcatggcaatagcaatggctgttcaagctgttgcagcaagttcttacccgtcaggctctgggtcaacgtacccatttgttggtggagctgatgtttgtattaacatttgccctagcagcgggaccagttctaggtcttcttttaccagaaatatttcctgggtgcatcagggcaaaggcaatggctttctctctatggggttggagatggtgactggaaagaacccaataaaaccggatgtggatgccattgatggcgagcagggaaggctgatcatgtgggtgatcagggagaaagtactgaatggaacttgtgctagtgaaattgaagctcggataggagacgtcatagaaccttcgtttgcaggtgaatgtgatgtgacaaagatggggattcacaaagaccaagagcattggcggaaaattagggacaggcggctttgctgtgtcatgatctatttaagaaactattgtacagagataaagttcttttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sugar_tr

Protein Analysis

238

Amino Acids

25.8

Weight (kDa)

8.73

Isoelectric Point (pI)

41.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sugar_tr PF00083 7 - 94 6.8e-10 Sugar (and other) transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 578
AatII GACGTC 1 cut(s) 570
Acc36I ACCTGC 1 cut(s) 578
AccB7I CCANNNNNTGG 1 cut(s) 302
AciI CCGC 3 cut(s) 342, 640, 658
AclWI GGATC 1 cut(s) 163
AcoI YGGCCR 1 cut(s) 39
AcyI GRCGYC 1 cut(s) 567
AfaI GTAC 3 cut(s) 293, 522, 697
AfiI CCNNNNNNNGG 3 cut(s) 302, 341, 354
AgsI TTSAA 3 cut(s) 94, 248, 551
AjnI CCWGG 1 cut(s) 380
AluBI AGCT 5 cut(s) 55, 216, 251, 311, 554
AluI AGCT 5 cut(s) 55, 216, 251, 311, 554
Alw26I GTCTC 1 cut(s) 558
AlwI GGATC 1 cut(s) 163
AlwNI CAGNNNCTG 2 cut(s) 158, 281
AoxI GGCC 2 cut(s) 39, 115
ApeKI GCWGC 2 cut(s) 257, 339
Asp700I GAANNNNTTC 2 cut(s) 21, 376
AspS9I GGNCC 1 cut(s) 345
AsuHPI GGTGA 3 cut(s) 445, 517, 602
AvaII GGWCC 1 cut(s) 345
BalI TGGCCA 1 cut(s) 41
BbsI GAAGAC 2 cut(s) 112, 351
BbvI GCAGC 2 cut(s) 269, 351
BccI CCATC 5 cut(s) 118, 172, 424, 470, 604
BceAI ACGGC 1 cut(s) 56
BciT130I CCWGG 1 cut(s) 382
BclI TGATCA 2 cut(s) 495, 507
BcoDI GTCTC 1 cut(s) 558
BfaI CTAG 3 cut(s) 336, 354, 540
BfuAI ACCTGC 1 cut(s) 578
BisI GCNGC 3 cut(s) 258, 340, 659
BlsI GCNGC 3 cut(s) 259, 341, 660
BmcAI AGTACT 1 cut(s) 522
Bme1390I CCNGG 1 cut(s) 382
Bme18I GGWCC 1 cut(s) 345
BmgT120I GGNCC 1 cut(s) 345
BmiI GGNNCC 1 cut(s) 346
BmrFI CCNGG 1 cut(s) 382
BmsI GCATC 2 cut(s) 397, 457
BpiI GAAGAC 2 cut(s) 112, 351
BsaHI GRCGYC 1 cut(s) 567
BsaJI CCNNGG 1 cut(s) 381
BsaWI WCCGGW 1 cut(s) 457
BsaXI ACNNNNNCTCC 2 cut(s) 300, 330
Bsc4I CCNNNNNNNGG 3 cut(s) 302, 341, 354
Bse1I ACTGG 2 cut(s) 348, 442
Bse3DI GCAATG 2 cut(s) 243, 409
BseBI CCWGG 1 cut(s) 382
BseDI CCNNGG 1 cut(s) 381
BseGI GGATG 2 cut(s) 466, 472
BseLI CCNNNNNNNGG 3 cut(s) 302, 341, 354
BseMI GCAATG 2 cut(s) 243, 409
BseNI ACTGG 2 cut(s) 348, 442
BseXI GCAGC 2 cut(s) 269, 351
BshFI GGCC 2 cut(s) 41, 117
BsiSI CCGG 1 cut(s) 458
BslFI GGGAC 2 cut(s) 358, 665
BslI CCNNNNNNNGG 3 cut(s) 302, 341, 354
BsmAI GTCTC 1 cut(s) 558
BsmBI CGTCTC 1 cut(s) 558
BsmFI GGGAC 2 cut(s) 358, 665
BsnI GGCC 2 cut(s) 41, 117
Bsp1407I TGTACA 1 cut(s) 695
Bsp143I GATC 4 cut(s) 155, 495, 507, 675
BspACI CCGC 3 cut(s) 342, 640, 658
BspANI GGCC 2 cut(s) 41, 117
BspHI TCATGA 1 cut(s) 672
BspLI GGNNCC 1 cut(s) 346
BspMI ACCTGC 1 cut(s) 578
BspPI GGATC 1 cut(s) 163
BsrDI GCAATG 2 cut(s) 243, 409
BsrGI TGTACA 1 cut(s) 695
BsrI ACTGG 2 cut(s) 348, 442
BssECI CCNNGG 1 cut(s) 381
BssMI GATC 4 cut(s) 155, 495, 507, 675
BssNI GRCGYC 1 cut(s) 567
Bst2UI CCWGG 1 cut(s) 382
Bst4CI ACNGT 1 cut(s) 207
BstACI GRCGYC 1 cut(s) 567
BstAUI TGTACA 1 cut(s) 695
BstC8I GCNNGC 1 cut(s) 482
BstF5I GGATG 2 cut(s) 466, 472
BstKTI GATC 4 cut(s) 158, 498, 510, 678
BstMAI GTCTC 1 cut(s) 558
BstMBI GATC 4 cut(s) 155, 495, 507, 675
BstMWI GCNNNNNNNGC 5 cut(s) 222, 248, 257, 339, 490
BstNI CCWGG 1 cut(s) 382
BstSCI CCNGG 1 cut(s) 380
BstV1I GCAGC 2 cut(s) 269, 351
BstV2I GAAGAC 2 cut(s) 112, 351
BstX2I RGATCY 1 cut(s) 155
BstYI RGATCY 1 cut(s) 155
BsuRI GGCC 2 cut(s) 41, 117
BtsCI GGATG 2 cut(s) 466, 472
BtsI GCAGTG 1 cut(s) 174
BtsIMutI CAGTG 1 cut(s) 174
BveI ACCTGC 1 cut(s) 578
Cac8I GCNNGC 1 cut(s) 482
CaiI CAGNNNCTG 2 cut(s) 158, 281
CciI TCATGA 1 cut(s) 672
Cfr13I GGNCC 1 cut(s) 345
Csp6I GTAC 3 cut(s) 292, 521, 696
CviAII CATG 3 cut(s) 226, 499, 673
CviQI GTAC 3 cut(s) 292, 521, 696
DpnI GATC 4 cut(s) 157, 497, 509, 677
DpnII GATC 4 cut(s) 155, 495, 507, 675
EaeI YGGCCR 1 cut(s) 39
EciI GGCGGA 1 cut(s) 655
Eco147I AGGCCT 1 cut(s) 117
Eco47I GGWCC 1 cut(s) 345
EcoRII CCWGG 1 cut(s) 380
Esp3I CGTCTC 1 cut(s) 558
FaeI CATG 3 cut(s) 229, 502, 676
FaqI GGGAC 2 cut(s) 358, 665
FatI CATG 3 cut(s) 225, 498, 672
FauI CCCGC 1 cut(s) 335
FbaI TGATCA 2 cut(s) 495, 507
Fnu4HI GCNGC 3 cut(s) 258, 340, 659
FokI GGATG 2 cut(s) 473, 479
Fsp4HI GCNGC 3 cut(s) 258, 340, 659
FspBI CTAG 3 cut(s) 336, 354, 540
GluI GCNGC 3 cut(s) 258, 340, 659
HaeIII GGCC 2 cut(s) 41, 117
HapII CCGG 1 cut(s) 458
Hin1I GRCGYC 1 cut(s) 567
Hin1II CATG 3 cut(s) 229, 502, 676
HincII GTYRAC 1 cut(s) 288
HindII GTYRAC 1 cut(s) 288
HinfI GANTC 1 cut(s) 616
HpaII CCGG 1 cut(s) 458
HphI GGTGA 3 cut(s) 445, 517, 602
Hpy166II GTNNAC 1 cut(s) 288
Hpy188I TCNGA 3 cut(s) 27, 52, 558
Hpy188III TCNNGA 2 cut(s) 153, 673
Hpy8I GTNNAC 1 cut(s) 288
HpyAV CCTTC 4 cut(s) 186, 190, 483, 588
HpyCH4III ACNGT 1 cut(s) 207
HpyCH4IV ACGT 2 cut(s) 290, 567
HpyCH4V TGCA 5 cut(s) 122, 143, 257, 388, 587
HpyF10VI GCNNNNNNNGC 5 cut(s) 222, 248, 257, 339, 490
HpySE526I ACGT 2 cut(s) 290, 567
Hsp92I GRCGYC 1 cut(s) 567
Hsp92II CATG 3 cut(s) 229, 502, 676
Ksp22I TGATCA 2 cut(s) 495, 507
Kzo9I GATC 4 cut(s) 155, 495, 507, 675
LmnI GCTCC 1 cut(s) 308
Lsp1109I GCAGC 2 cut(s) 269, 351
LweI GCATC 2 cut(s) 397, 457
MaeI CTAG 3 cut(s) 336, 354, 540
MaeII ACGT 2 cut(s) 290, 567
MaeIII GTNAC 2 cut(s) 433, 601
MalI GATC 4 cut(s) 157, 497, 509, 677
MboI GATC 4 cut(s) 155, 495, 507, 675
MboII GAAGA 3 cut(s) 19, 117, 351
MflI RGATCY 1 cut(s) 155
MlsI TGGCCA 1 cut(s) 41
MluCI AATT 3 cut(s) 138, 546, 645
MluNI TGGCCA 1 cut(s) 41
MmeI TCCRAC 1 cut(s) 405
Mox20I TGGCCA 1 cut(s) 41
MroXI GAANNNNTTC 2 cut(s) 21, 376
MscI TGGCCA 1 cut(s) 41
MseI TTAA 2 cut(s) 324, 683
MslI CAYNNNNRTG 1 cut(s) 503
Msp20I TGGCCA 1 cut(s) 41
MspA1I CMGCKG 1 cut(s) 342
MspI CCGG 1 cut(s) 458
MspR9I CCNGG 1 cut(s) 382
MvaI CCWGG 1 cut(s) 382
MwoI GCNNNNNNNGC 5 cut(s) 222, 248, 257, 339, 490
NdeII GATC 4 cut(s) 155, 495, 507, 675
NlaIII CATG 3 cut(s) 229, 502, 676
NlaIV GGNNCC 1 cut(s) 346
NmuCI GTSAC 2 cut(s) 433, 601
PagI TCATGA 1 cut(s) 672
PaqCI CACCTGC 1 cut(s) 578
PceI AGGCCT 1 cut(s) 117
PdmI GAANNNNTTC 2 cut(s) 21, 376
PfeI GAWTC 1 cut(s) 616
PflMI CCANNNNNTGG 1 cut(s) 302
PkrI GCNGC 3 cut(s) 259, 341, 660
Psp6I CCWGG 1 cut(s) 380
PspGI CCWGG 1 cut(s) 380
PspN4I GGNNCC 1 cut(s) 346
PspPI GGNCC 1 cut(s) 345
PstNI CAGNNNCTG 2 cut(s) 158, 281
PsuI RGATCY 1 cut(s) 155
RsaI GTAC 3 cut(s) 293, 522, 697
RsaNI GTAC 3 cut(s) 292, 521, 696
RseI CAYNNNNRTG 1 cut(s) 503
SaqAI TTAA 2 cut(s) 324, 683
SatI GCNGC 3 cut(s) 258, 340, 659
Sau3AI GATC 4 cut(s) 155, 495, 507, 675
Sau96I GGNCC 1 cut(s) 345
ScaI AGTACT 1 cut(s) 522
ScrFI CCNGG 1 cut(s) 382
SfaNI GCATC 2 cut(s) 397, 457
SinI GGWCC 1 cut(s) 345
SmiMI CAYNNNNRTG 1 cut(s) 503
Sse9I AATT 3 cut(s) 138, 546, 645
SseBI AGGCCT 1 cut(s) 117
SsiI CCGC 3 cut(s) 342, 640, 658
SspI AATATT 1 cut(s) 376
SspMI CTAG 3 cut(s) 336, 354, 540
StuI AGGCCT 1 cut(s) 117
StyD4I CCNGG 1 cut(s) 380
TaaI ACNGT 1 cut(s) 207
TaiI ACGT 2 cut(s) 293, 570
TasI AATT 3 cut(s) 138, 546, 645
TatI WGTACW 2 cut(s) 520, 695
TauI GCSGC 1 cut(s) 661
TfiI GAWTC 1 cut(s) 616
Tru1I TTAA 2 cut(s) 324, 683
Tru9I TTAA 2 cut(s) 324, 683
TscAI CASTG 1 cut(s) 174
TseFI GTSAC 2 cut(s) 433, 601
TseI GCWGC 2 cut(s) 257, 339
Tsp45I GTSAC 2 cut(s) 433, 601
TspDTI ATGAA 1 cut(s) 121
TspGWI ACGGA 1 cut(s) 76
TspRI CASTG 1 cut(s) 174
Van91I CCANNNNNTGG 1 cut(s) 302
VpaK11BI GGWCC 1 cut(s) 345
XmnI GAANNNNTTC 2 cut(s) 21, 376
XspI CTAG 3 cut(s) 336, 354, 540
ZraI GACGTC 1 cut(s) 568
ZrmI AGTACT 1 cut(s) 522
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.