Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005919.1

Orthogroup ID

OG0007525

Physical Location & Seq

Genomic Coordinates Forward (+)

56218 .. 57473

Gene Structure 1256 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

atgcccttgccccttgaaatggaagaggagcctgtttatgtaaatgccaagcaataccatggtattttgagacgaagacagtcacgtgctaaagctgagcttgaaaggaagcttataaaagttaggaagccatatcttcatgagtctcgtcaccagcatgcgttgaggagagcaaggggttgtggaggccgtttccttaatacgaagaagcaagatgataatgatgcaaattcctcatcagaaaaaaccattaatttggatgcaaacttttcacccaaatctgccaaatctggttttgagtgctttcctaatgatagcaatggcaatttcgtttcctccaatgtccagcaagaaggatcaggttcatggttcaggacactctccaacggtaatggcaatggccatgtcccgtcatcaacgtatcatacaacatttcatgacggcaaggaaggtgttttccttggtgttgctgaaggtgtgcagtctccagcttggaaaaacacttcttgtgcaatgtctgtcaggcaattcattcttggctttggttactttgtaattattgggacgataccacaggagataggtgatggattccatgctgtcttcagtcatgaaccaattccactcaccccctgttattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009555 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009890 GO:0009892 GO:0010154 GO:0010262 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0045892 GO:0045934 GO:0048229 GO:0048316 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0055046 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0140110 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 map04612 map05152

Pfam Domains

Protein Families

CBFB_NFYA

Protein Analysis

213

Amino Acids

23.75

Weight (kDa)

8.88

Isoelectric Point (pI)

56.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CBFB_NFYA	PF02045	10 - 65	6e-27	CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0007525)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g01120 FvH4_7g01120 FvH4_7g01120
malus_domestica	MD02G1309800.v1.1 MD07G1011300.v1.1
prunus_persica	Prupe.2G014500_v2.0.a1
pyrus_communis	pycom07g00940
rosa_chinensis	RchiOBHm_Chr1g0316121 RchiOBHm_Chr1g0316201
rosa_laevigata	RLG00000030693
rosa_multiflora	Rmu_sc0002531.1_g000027 Rmu_sc0005919.1_g000009 Rmu_sc0005919.1_g000010
rosa_roxburghii	Rroxscaffold_4G00331120
rosa_rugosa	Rorug01G0009200 Rorug01G0009300 Rorug01G0009300 Rorug01G0009400 Rorug01G0009500 Rorug01G0009500
rosa_samantha	Rh1AG019200 Rh1BG014200 Rh1CG016800 Rh1DG013800
rosa_wichuraiana	Rw1G001250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	116
AclWI	GGATC	1 cut(s)	364
AcoI	YGGCCR	1 cut(s)	400
AcsI	RAATTY	1 cut(s)	229
AcuI	CTGAAG	2 cut(s)	492, 589
AcvI	CACGTG	1 cut(s)	86
AfiI	CCNNNNNNNGG	1 cut(s)	19
AgsI	TTSAA	2 cut(s)	17, 104
AluBI	AGCT	4 cut(s)	95, 100, 112, 491
AluI	AGCT	4 cut(s)	95, 100, 112, 491
Alw26I	GTCTC	3 cut(s)	64, 150, 489
AlwI	GGATC	1 cut(s)	364
AoxI	GGCC	2 cut(s)	187, 400
ApoI	RAATTY	1 cut(s)	229
AseI	ATTAAT	1 cut(s)	252
Asp700I	GAANNNNTTC	1 cut(s)	618
AsuHPI	GGTGA	4 cut(s)	143, 264, 596, 619
BalI	TGGCCA	1 cut(s)	402
BbrPI	CACGTG	1 cut(s)	86
BbsI	GAAGAC	2 cut(s)	82, 595
BccI	CCATC	1 cut(s)	581
BceAI	ACGGC	2 cut(s)	174, 457
BcoDI	GTCTC	3 cut(s)	64, 150, 489
BlpI	GCTNAGC	1 cut(s)	96
BmiI	GGNNCC	1 cut(s)	30
BmsI	GCATC	2 cut(s)	214, 250
BpiI	GAAGAC	2 cut(s)	82, 595
BpmI	CTGGAG	1 cut(s)	471
Bpu1102I	GCTNAGC	1 cut(s)	96
BsaAI	YACGTR	1 cut(s)	86
BsaJI	CCNNGG	2 cut(s)	58, 460
Bsc4I	CCNNNNNNNGG	1 cut(s)	19
Bse3DI	GCAATG	3 cut(s)	325, 403, 519
BseDI	CCNNGG	2 cut(s)	58, 460
BseGI	GGATG	1 cut(s)	265
BseLI	CCNNNNNNNGG	1 cut(s)	19
BseMI	GCAATG	3 cut(s)	325, 403, 519
BseMII	CTCAG	1 cut(s)	87
BseRI	GAGGAG	2 cut(s)	41, 181
BsgI	GTGCAG	1 cut(s)	500
BshFI	GGCC	2 cut(s)	189, 402
BslFI	GGGAC	2 cut(s)	392, 577
BslI	CCNNNNNNNGG	1 cut(s)	19
BsmAI	GTCTC	3 cut(s)	64, 150, 489
BsmBI	CGTCTC	1 cut(s)	64
BsmFI	GGGAC	2 cut(s)	392, 577
BsnI	GGCC	2 cut(s)	189, 402
Bsp143I	GATC	1 cut(s)	356
Bsp1720I	GCTNAGC	1 cut(s)	96
Bsp19I	CCATGG	1 cut(s)	58
BspANI	GGCC	2 cut(s)	189, 402
BspCNI	CTCAG	1 cut(s)	88
BspHI	TCATGA	3 cut(s)	139, 436, 610
BspLI	GGNNCC	1 cut(s)	30
BspPI	GGATC	1 cut(s)	364
BsrDI	GCAATG	3 cut(s)	325, 403, 519
BssECI	CCNNGG	2 cut(s)	58, 460
BssMI	GATC	1 cut(s)	356
BssT1I	CCWWGG	2 cut(s)	58, 460
Bst4CI	ACNGT	2 cut(s)	81, 389
Bst6I	CTCTTC	1 cut(s)	18
BstBAI	YACGTR	1 cut(s)	86
BstC8I	GCNNGC	1 cut(s)	159
BstDEI	CTNAG	1 cut(s)	96
BstDSI	CCRYGG	1 cut(s)	58
BstF5I	GGATG	1 cut(s)	265
BstKTI	GATC	1 cut(s)	359
BstMAI	GTCTC	3 cut(s)	64, 150, 489
BstMBI	GATC	1 cut(s)	356
BstNSI	RCATGY	1 cut(s)	161
BstV2I	GAAGAC	2 cut(s)	82, 595
BstXI	CCANNNNNNTGG	1 cut(s)	256
BsuRI	GGCC	2 cut(s)	189, 402
BtgI	CCRYGG	1 cut(s)	58
BtsCI	GGATG	1 cut(s)	265
Cac8I	GCNNGC	1 cut(s)	159
CciI	TCATGA	3 cut(s)	139, 436, 610
CviAII	CATG	8 cut(s)	59, 140, 158, 366, 404, 437, 596, 611
CviJI	RGCY	9 cut(s)	31, 95, 100, 112, 130, 189, 402, 491, 540
CviKI_1	RGCY	9 cut(s)	31, 95, 100, 112, 130, 189, 402, 491, 540
DdeI	CTNAG	1 cut(s)	96
DpnI	GATC	1 cut(s)	358
DpnII	GATC	1 cut(s)	356
EaeI	YGGCCR	1 cut(s)	400
Eam1104I	CTCTTC	1 cut(s)	18
EarI	CTCTTC	1 cut(s)	18
Eco130I	CCWWGG	2 cut(s)	58, 460
Eco57I	CTGAAG	2 cut(s)	492, 589
Eco72I	CACGTG	1 cut(s)	86
EcoT14I	CCWWGG	2 cut(s)	58, 460
ErhI	CCWWGG	2 cut(s)	58, 460
Esp3I	CGTCTC	1 cut(s)	64
FaeI	CATG	8 cut(s)	62, 143, 161, 369, 407, 440, 599, 614
FalI	AAGNNNNNCTT	2 cut(s)	84, 116
FaqI	GGGAC	2 cut(s)	392, 577
FatI	CATG	8 cut(s)	58, 139, 157, 365, 403, 436, 595, 610
FokI	GGATG	1 cut(s)	272
GsuI	CTGGAG	1 cut(s)	471
HaeIII	GGCC	2 cut(s)	189, 402
Hin1II	CATG	8 cut(s)	62, 143, 161, 369, 407, 440, 599, 614
HindIII	AAGCTT	1 cut(s)	110
HinfI	GANTC	2 cut(s)	143, 591
HphI	GGTGA	4 cut(s)	143, 264, 596, 619
Hpy188I	TCNGA	1 cut(s)	241
Hpy188III	TCNNGA	4 cut(s)	140, 373, 437, 611
HpyAV	CCTTC	3 cut(s)	347, 443, 467
HpyCH4III	ACNGT	2 cut(s)	81, 389
HpyCH4IV	ACGT	2 cut(s)	85, 419
HpyCH4V	TGCA	4 cut(s)	227, 263, 481, 512
HpyF3I	CTNAG	1 cut(s)	96
HpySE526I	ACGT	2 cut(s)	85, 419
Hsp92II	CATG	8 cut(s)	62, 143, 161, 369, 407, 440, 599, 614
Kzo9I	GATC	1 cut(s)	356
LmnI	GCTCC	1 cut(s)	28
LpnPI	CCDG	9 cut(s)	45, 167, 276, 345, 358, 359, 501, 508, 560
LweI	GCATC	2 cut(s)	214, 250
MaeII	ACGT	2 cut(s)	85, 419
MaeIII	GTNAC	3 cut(s)	81, 149, 545
MalI	GATC	1 cut(s)	358
MboI	GATC	1 cut(s)	356
MboII	GAAGA	5 cut(s)	35, 87, 128, 217, 595
MlsI	TGGCCA	1 cut(s)	402
MluCI	AATT	6 cut(s)	229, 253, 325, 527, 555, 618
MluNI	TGGCCA	1 cut(s)	402
MlyI	GAGTC	1 cut(s)	152
MmeI	TCCRAC	1 cut(s)	408
MnlI	CCTC	5 cut(s)	19, 159, 179, 244, 346
Mox20I	TGGCCA	1 cut(s)	402
MroXI	GAANNNNTTC	1 cut(s)	618
MscI	TGGCCA	1 cut(s)	402
MseI	TTAA	2 cut(s)	198, 252
MslI	CAYNNNNRTG	1 cut(s)	156
Msp20I	TGGCCA	1 cut(s)	402
NcoI	CCATGG	1 cut(s)	58
NdeII	GATC	1 cut(s)	356
NlaIII	CATG	8 cut(s)	62, 143, 161, 369, 407, 440, 599, 614
NlaIV	GGNNCC	1 cut(s)	30
NmuCI	GTSAC	2 cut(s)	81, 149
NspI	RCATGY	1 cut(s)	161
PaeI	GCATGC	1 cut(s)	161
PagI	TCATGA	3 cut(s)	139, 436, 610
PdmI	GAANNNNTTC	1 cut(s)	618
PfeI	GAWTC	1 cut(s)	591
PleI	GAGTC	1 cut(s)	151
PmaCI	CACGTG	1 cut(s)	86
PmlI	CACGTG	1 cut(s)	86
PpsI	GAGTC	1 cut(s)	151
Ppu21I	YACGTR	1 cut(s)	86
PshBI	ATTAAT	1 cut(s)	252
PsiI	TTATAA	1 cut(s)	116
PspCI	CACGTG	1 cut(s)	86
PspN4I	GGNNCC	1 cut(s)	30
RseI	CAYNNNNRTG	1 cut(s)	156
SaqAI	TTAA	2 cut(s)	198, 252
Sau3AI	GATC	1 cut(s)	356
SchI	GAGTC	1 cut(s)	152
SfaNI	GCATC	2 cut(s)	214, 250
SmiMI	CAYNNNNRTG	1 cut(s)	156
SphI	GCATGC	1 cut(s)	161
Sse9I	AATT	6 cut(s)	229, 253, 325, 527, 555, 618
StyI	CCWWGG	2 cut(s)	58, 460
TaaI	ACNGT	2 cut(s)	81, 389
TaiI	ACGT	2 cut(s)	88, 422
TasI	AATT	6 cut(s)	229, 253, 325, 527, 555, 618
TfiI	GAWTC	1 cut(s)	591
Tru1I	TTAA	2 cut(s)	198, 252
Tru9I	TTAA	2 cut(s)	198, 252
TseFI	GTSAC	2 cut(s)	81, 149
Tsp45I	GTSAC	2 cut(s)	81, 149
TspDTI	ATGAA	5 cut(s)	128, 354, 425, 520, 627
VspI	ATTAAT	1 cut(s)	252
XapI	RAATTY	1 cut(s)	229
XceI	RCATGY	1 cut(s)	161
XmnI	GAANNNNTTC	1 cut(s)	618

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.