Rmu_sc0006153.1_g000007

Protein N-lysine methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006153.1
OG0012035
Physical Location & Seq
Reverse (-)
31174 .. 32503
1330 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1077 bp
atggccgctctagaagaagaccaagacgacgtcgttataaaccccgccacaatgctcctccgcgacgacgacgacgacgactccgacgaggtcaagatggcggagggcgaacagctccggcagcattctctgccttcgatcgactccacaatcgtcaccaggcagctcccctcgcagggtctctcctttcagctctggccggcagccaccacgctcctcactctcctggacgaccaccgccgtgaccccaccacaagcccccttggccccacgctctcggccttggaatccggccggagactcaagatcctcgaactaggttctggaaccggcctcgtcggaatagccgctgctgccacgctcggcgcgtgcgtcactgtgacggacctcccgcacgtcgtcgacaaccttaagttcaatgcggaactaaacgccgccgctttgggagggagcggcgggagtgtgagagtggcggcgctgaggtggggagaggcggaggacgcggaggcaatagggcgggagtttgatattgtattggcgtcggatgtagtgtatcacgaccacctctacgagccgctgctcaaaacgctgtcgtttctgctgttgggagagggcggcgtggtgtttgtgatggcccacttgaggaggtggaagaaggagtcggccttcttcaagagggccaggaagctttttgaggttgaggtcttgcacgtggatcgtccgtgccagggatcgagggtcggagttactgtttaccgttttaccgggaagccaagtaagaaattgttgaatggtgtctctgtgaacacttctacccttccccgccttgacagccgacagccgaccaacgaggtttatgctcatattccggtatttgctagccaatcgcagtggaaacgatcctttacccaaattgaatacttcatcgcttcctcagtggagatctttcatattttaggagtctctaaagcaacaaaattgcacaattgtcgtcctgtctgggatacacagcaaaaaccacccgtccctatattcttcctgcaacggaagcaccatgctctcgctggtgatctttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_16

Protein Analysis

358

Amino Acids

39.44

Weight (kDa)

6.07

Isoelectric Point (pI)

46.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_16 PF10294 57 - 228 1e-30 Lysine methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012035)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G50850 AT5G49560
fragaria_vesca FvH4_1g13310
malus_domestica MD02G1147500.v1.1 MD15G1261800.v1.1
prunus_persica Prupe.7G154600_v2.0.a1
pyrus_communis pycom15g22900
rosa_chinensis RchiOBHm_Chr2g0101571
rosa_laevigata RLG00000017091
rosa_multiflora Rmu_co8339275.1_g000001 Rmu_sc0006153.1_g000007 Rmu_sc0019613.1_g000002
rosa_roxburghii Rroxscaffold_2G00141180
rosa_rugosa Rorug02G0097300
rosa_samantha Rh2AG148100 Rh2BG153500 Rh2CG154000 Rh2DG153800
rosa_wichuraiana Rw2G011550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 38
AatII GACGTC 1 cut(s) 33
AccBSI CCGCTC 2 cut(s) 8, 453
AccI GTMKAC 1 cut(s) 402
AccII CGCG 3 cut(s) 63, 368, 503
AclWI GGATC 4 cut(s) 301, 723, 739, 894
AcoI YGGCCR 3 cut(s) 3, 197, 292
AcvI CACGTG 1 cut(s) 712
AcyI GRCGYC 2 cut(s) 30, 539
AfiI CCNNNNNNNGG 4 cut(s) 175, 176, 642, 728
AflII CTTAAG 1 cut(s) 410
AgsI TTSAA 4 cut(s) 418, 673, 790, 917
AjiI CACGTC 1 cut(s) 397
AjnI CCWGG 4 cut(s) 158, 225, 680, 726
AleI CACNNNNGTG 1 cut(s) 240
AluBI AGCT 4 cut(s) 115, 166, 193, 688
AluI AGCT 4 cut(s) 115, 166, 193, 688
Alw26I GTCTC 4 cut(s) 185, 292, 802, 967
AlwI GGATC 4 cut(s) 301, 723, 739, 894
AoxI GGCC 9 cut(s) 3, 197, 265, 279, 292, 331, 633, 663, 678
ApeKI GCWGC 6 cut(s) 121, 163, 203, 350, 353, 577
AspLEI GCGC 2 cut(s) 368, 478
AspS9I GGNCC 4 cut(s) 266, 385, 634, 678
AsuC2I CCSGG 1 cut(s) 766
AsuHPI GGTGA 1 cut(s) 148
AsuNHI GCTAGC 1 cut(s) 878
AvaII GGWCC 1 cut(s) 385
BbrPI CACGTG 1 cut(s) 712
BbsI GAAGAC 1 cut(s) 24
BbvCI CCTCAGC 1 cut(s) 479
BbvI GCAGC 6 cut(s) 133, 175, 215, 337, 340, 564
BccI CCATC 2 cut(s) 91, 625
BceAI ACGGC 1 cut(s) 225
BcgI CGANNNNNNTGC 6 cut(s) 698, 732, 839, 873, 971, 1005
BciT130I CCWGG 4 cut(s) 160, 227, 682, 728
BciVI GTATCC 1 cut(s) 997
BcnI CCSGG 1 cut(s) 766
BcoDI GTCTC 4 cut(s) 185, 292, 802, 967
BfaI CTAG 3 cut(s) 11, 317, 879
BfoI RGCGCY 1 cut(s) 479
BfrI CTTAAG 1 cut(s) 410
BfuI GTATCC 1 cut(s) 997
BglI GCCNNNNNGGC 1 cut(s) 264
BglII AGATCT 1 cut(s) 942
Bme1390I CCNGG 5 cut(s) 160, 227, 682, 728, 766
Bme18I GGWCC 1 cut(s) 385
BmgBI CACGTC 1 cut(s) 397
BmgT120I GGNCC 4 cut(s) 266, 385, 634, 678
BmiI GGNNCC 2 cut(s) 268, 328
BmrFI CCNGG 5 cut(s) 160, 227, 682, 728, 766
BmtI GCTAGC 1 cut(s) 882
BpiI GAAGAC 1 cut(s) 24
Bpu10I CCTNAGC 1 cut(s) 479
BpuEI CTTGAG 2 cut(s) 287, 661
BpuMI CCSGG 1 cut(s) 766
BsaAI YACGTR 1 cut(s) 712
BsaHI GRCGYC 2 cut(s) 30, 539
BsaI GGTCTC 1 cut(s) 185
BsaJI CCNNGG 3 cut(s) 262, 282, 727
BsaWI WCCGGW 1 cut(s) 868
BsaXI ACNNNNNCTCC 4 cut(s) 65, 95, 735, 765
Bsc4I CCNNNNNNNGG 4 cut(s) 175, 176, 642, 728
Bse118I RCCGGY 2 cut(s) 199, 329
BseBI CCWGG 4 cut(s) 160, 227, 682, 728
BseDI CCNNGG 3 cut(s) 262, 282, 727
BseGI GGATG 1 cut(s) 550
BseLI CCNNNNNNNGG 4 cut(s) 175, 176, 642, 728
BseMII CTCAG 2 cut(s) 470, 948
BseRI GAGGAG 3 cut(s) 47, 206, 658
BseX3I CGGCCG 1 cut(s) 292
BseXI GCAGC 6 cut(s) 133, 175, 215, 337, 340, 564
Bsh1236I CGCG 3 cut(s) 63, 368, 503
Bsh1285I CGRYCG 2 cut(s) 141, 295
BshFI GGCC 9 cut(s) 5, 199, 267, 281, 294, 333, 635, 665, 680
BsiEI CGRYCG 2 cut(s) 141, 295
BsiSI CCGG 7 cut(s) 118, 200, 291, 295, 330, 765, 869
BslFI GGGAC 1 cut(s) 1010
BslI CCNNNNNNNGG 4 cut(s) 175, 176, 642, 728
BsmAI GTCTC 4 cut(s) 185, 292, 802, 967
BsmFI GGGAC 1 cut(s) 1010
BsmI GAATGC 1 cut(s) 124
BsnI GGCC 9 cut(s) 5, 199, 267, 281, 294, 333, 635, 665, 680
Bso31I GGTCTC 1 cut(s) 185
Bsp143I GATC 7 cut(s) 138, 306, 715, 731, 899, 942, 1069
BspANI GGCC 9 cut(s) 5, 199, 267, 281, 294, 333, 635, 665, 680
BspCNI CTCAG 2 cut(s) 471, 947
BspFNI CGCG 3 cut(s) 63, 368, 503
BspLI GGNNCC 2 cut(s) 268, 328
BspOI GCTAGC 1 cut(s) 882
BspPI GGATC 4 cut(s) 301, 723, 739, 894
BspTI CTTAAG 1 cut(s) 410
BspTNI GGTCTC 1 cut(s) 185
BsrBI CCGCTC 2 cut(s) 8, 453
BsrFI RCCGGY 2 cut(s) 199, 329
BssAI RCCGGY 2 cut(s) 199, 329
BssECI CCNNGG 3 cut(s) 262, 282, 727
BssMI GATC 7 cut(s) 138, 306, 715, 731, 899, 942, 1069
BssNI GRCGYC 2 cut(s) 30, 539
BssT1I CCWWGG 2 cut(s) 262, 282
Bst2UI CCWGG 4 cut(s) 160, 227, 682, 728
Bst4CI ACNGT 3 cut(s) 379, 751, 758
BstACI GRCGYC 2 cut(s) 30, 539
BstAFI CTTAAG 1 cut(s) 410
BstAPI GCANNNNNTGC 1 cut(s) 130
BstBAI YACGTR 1 cut(s) 712
BstC8I GCNNGC 3 cut(s) 201, 370, 880
BstDEI CTNAG 2 cut(s) 479, 934
BstF5I GGATG 1 cut(s) 550
BstFNI CGCG 3 cut(s) 63, 368, 503
BstH2I RGCGCY 1 cut(s) 479
BstHHI GCGC 2 cut(s) 368, 478
BstKTI GATC 7 cut(s) 141, 309, 718, 734, 902, 945, 1072
BstMAI GTCTC 4 cut(s) 185, 292, 802, 967
BstMBI GATC 7 cut(s) 138, 306, 715, 731, 899, 942, 1069
BstMCI CGRYCG 2 cut(s) 141, 295
BstMWI GCNNNNNNNGC 9 cut(s) 121, 130, 172, 264, 353, 500, 586, 831, 1048
BstNI CCWGG 4 cut(s) 160, 227, 682, 728
BstSCI CCNGG 5 cut(s) 158, 225, 680, 726, 764
BstUI CGCG 3 cut(s) 63, 368, 503
BstV1I GCAGC 6 cut(s) 133, 175, 215, 337, 340, 564
BstV2I GAAGAC 1 cut(s) 24
BstX2I RGATCY 2 cut(s) 306, 942
BstYI RGATCY 2 cut(s) 306, 942
BstZI CGGCCG 1 cut(s) 292
BsuI GTATCC 1 cut(s) 997
BsuRI GGCC 9 cut(s) 5, 199, 267, 281, 294, 333, 635, 665, 680
BtgZI GCGATG 1 cut(s) 910
BtrI CACGTC 1 cut(s) 397
BtsCI GGATG 1 cut(s) 550
BtsI GCAGTG 1 cut(s) 896
BtsIMutI CAGTG 3 cut(s) 375, 896, 942
Cac8I GCNNGC 3 cut(s) 201, 370, 880
CfoI GCGC 2 cut(s) 368, 478
Cfr10I RCCGGY 2 cut(s) 199, 329
Cfr13I GGNCC 4 cut(s) 266, 385, 634, 678
CseI GACGC 3 cut(s) 361, 509, 528
CspCI CAANNNNNGTGG 2 cut(s) 872, 907
CviAII CATG 1 cut(s) 1055
DdeI CTNAG 2 cut(s) 479, 934
DpnI GATC 7 cut(s) 140, 308, 717, 733, 901, 944, 1071
DpnII GATC 7 cut(s) 138, 306, 715, 731, 899, 942, 1069
EaeI YGGCCR 3 cut(s) 3, 197, 292
EagI CGGCCG 1 cut(s) 292
EciI GGCGGA 2 cut(s) 116, 509
EclXI CGGCCG 1 cut(s) 292
Eco130I CCWWGG 2 cut(s) 262, 282
Eco31I GGTCTC 1 cut(s) 185
Eco47I GGWCC 1 cut(s) 385
Eco52I CGGCCG 1 cut(s) 292
Eco72I CACGTG 1 cut(s) 712
EcoRII CCWGG 4 cut(s) 158, 225, 680, 726
EcoT14I CCWWGG 2 cut(s) 262, 282
ErhI CCWWGG 2 cut(s) 262, 282
FaeI CATG 1 cut(s) 1058
FaiI YATR 6 cut(s) 38, 858, 864, 951, 1031, 1056
FaqI GGGAC 1 cut(s) 1010
FatI CATG 1 cut(s) 1054
FauI CCCGC 5 cut(s) 52, 399, 449, 510, 830
FblI GTMKAC 1 cut(s) 402
FokI GGATG 1 cut(s) 557
FspBI CTAG 3 cut(s) 11, 317, 879
GlaI GCGC 2 cut(s) 367, 477
HaeII RGCGCY 1 cut(s) 479
HaeIII GGCC 9 cut(s) 5, 199, 267, 281, 294, 333, 635, 665, 680
HapII CCGG 7 cut(s) 118, 200, 291, 295, 330, 765, 869
HgaI GACGC 3 cut(s) 361, 509, 528
HhaI GCGC 2 cut(s) 368, 478
Hin1I GRCGYC 2 cut(s) 30, 539
Hin1II CATG 1 cut(s) 1058
Hin6I GCGC 2 cut(s) 366, 476
HinP1I GCGC 2 cut(s) 366, 476
HincII GTYRAC 1 cut(s) 403
HindII GTYRAC 1 cut(s) 403
HindIII AAGCTT 1 cut(s) 686
HinfI GANTC 6 cut(s) 80, 143, 287, 300, 659, 960
HpaII CCGG 7 cut(s) 118, 200, 291, 295, 330, 765, 869
HphI GGTGA 1 cut(s) 148
Hpy166II GTNNAC 3 cut(s) 403, 754, 805
Hpy188I TCNGA 4 cut(s) 85, 341, 544, 743
Hpy188III TCNNGA 6 cut(s) 11, 94, 304, 324, 557, 673
Hpy8I GTNNAC 3 cut(s) 403, 754, 805
HpyAV CCTTC 4 cut(s) 144, 649, 676, 827
HpyCH4III ACNGT 3 cut(s) 379, 751, 758
HpyCH4IV ACGT 3 cut(s) 30, 396, 711
HpyCH4V TGCA 3 cut(s) 709, 982, 1042
HpyF10VI GCNNNNNNNGC 9 cut(s) 121, 130, 172, 264, 353, 500, 586, 831, 1048
HpyF3I CTNAG 2 cut(s) 479, 934
HpySE526I ACGT 3 cut(s) 30, 396, 711
Hsp92I GRCGYC 2 cut(s) 30, 539
Hsp92II CATG 1 cut(s) 1058
HspAI GCGC 2 cut(s) 366, 476
KroI GCCGGC 1 cut(s) 199
KroNI GCCGGC 1 cut(s) 201
Kzo9I GATC 7 cut(s) 138, 306, 715, 731, 899, 942, 1069
LmnI GCTCC 5 cut(s) 60, 120, 171, 219, 450
Lsp1109I GCAGC 6 cut(s) 133, 175, 215, 337, 340, 564
MaeI CTAG 3 cut(s) 11, 317, 879
MaeII ACGT 3 cut(s) 30, 396, 711
MaeIII GTNAC 5 cut(s) 154, 242, 373, 379, 745
MalI GATC 7 cut(s) 140, 308, 717, 733, 901, 944, 1071
MbiI CCGCTC 2 cut(s) 8, 453
MboI GATC 7 cut(s) 138, 306, 715, 731, 899, 942, 1069
MboII GAAGA 5 cut(s) 26, 29, 661, 664, 1027
MfeI CAATTG 1 cut(s) 985
MflI RGATCY 2 cut(s) 306, 942
MluCI AATT 4 cut(s) 782, 912, 977, 985
MlyI GAGTC 5 cut(s) 74, 137, 294, 668, 969
MmeI TCCRAC 4 cut(s) 108, 319, 522, 721
MroNI GCCGGC 1 cut(s) 199
MseI TTAA 1 cut(s) 411
MslI CAYNNNNRTG 1 cut(s) 240
MspA1I CMGCKG 2 cut(s) 350, 577
MspCI CTTAAG 1 cut(s) 410
MspI CCGG 7 cut(s) 118, 200, 291, 295, 330, 765, 869
MspR9I CCNGG 5 cut(s) 160, 227, 682, 728, 766
MunI CAATTG 1 cut(s) 985
Mva1269I GAATGC 1 cut(s) 124
MvaI CCWGG 4 cut(s) 160, 227, 682, 728
MvnI CGCG 3 cut(s) 63, 368, 503
MwoI GCNNNNNNNGC 9 cut(s) 121, 130, 172, 264, 353, 500, 586, 831, 1048
NaeI GCCGGC 1 cut(s) 201
NciI CCSGG 1 cut(s) 766
NdeII GATC 7 cut(s) 138, 306, 715, 731, 899, 942, 1069
NgoMIV GCCGGC 1 cut(s) 199
NheI GCTAGC 1 cut(s) 878
NlaIII CATG 1 cut(s) 1058
NlaIV GGNNCC 2 cut(s) 268, 328
NmeAIII GCCGAG 2 cut(s) 257, 342
NmuCI GTSAC 4 cut(s) 154, 242, 373, 379
OliI CACNNNNGTG 1 cut(s) 240
PcsI WCGNNNNNNNCGW 6 cut(s) 72, 75, 81, 84, 365, 369
PctI GAATGC 1 cut(s) 124
PdiI GCCGGC 1 cut(s) 201
PfeI GAWTC 1 cut(s) 287
PflFI GACNNNGTC 2 cut(s) 29, 89
PfoI TCCNGGA 1 cut(s) 225
Ple19I CGATCG 1 cut(s) 141
PleI GAGTC 5 cut(s) 74, 137, 294, 667, 968
PmaCI CACGTG 1 cut(s) 712
PmlI CACGTG 1 cut(s) 712
PpsI GAGTC 5 cut(s) 74, 137, 294, 667, 968
Ppu21I YACGTR 1 cut(s) 712
PsiI TTATAA 1 cut(s) 38
Psp6I CCWGG 4 cut(s) 158, 225, 680, 726
PspCI CACGTG 1 cut(s) 712
PspGI CCWGG 4 cut(s) 158, 225, 680, 726
PspN4I GGNNCC 2 cut(s) 268, 328
PspPI GGNCC 4 cut(s) 266, 385, 634, 678
PsuI RGATCY 2 cut(s) 306, 942
PsyI GACNNNGTC 2 cut(s) 29, 89
PvuI CGATCG 1 cut(s) 141
RseI CAYNNNNRTG 1 cut(s) 240
SalI GTCGAC 1 cut(s) 401
SaqAI TTAA 1 cut(s) 411
Sau3AI GATC 7 cut(s) 138, 306, 715, 731, 899, 942, 1069
Sau96I GGNCC 4 cut(s) 266, 385, 634, 678
SchI GAGTC 5 cut(s) 74, 137, 294, 668, 969
ScrFI CCNGG 5 cut(s) 160, 227, 682, 728, 766
SinI GGWCC 1 cut(s) 385
SmiMI CAYNNNNRTG 1 cut(s) 240
SmlI CTYRAG 3 cut(s) 302, 410, 640
SmoI CTYRAG 3 cut(s) 302, 410, 640
Sse9I AATT 4 cut(s) 782, 912, 977, 985
SspMI CTAG 3 cut(s) 11, 317, 879
StyD4I CCNGG 5 cut(s) 158, 225, 680, 726, 764
StyI CCWWGG 2 cut(s) 262, 282
TaaI ACNGT 3 cut(s) 379, 751, 758
TaiI ACGT 3 cut(s) 33, 399, 714
TaqI TCGA 5 cut(s) 137, 141, 312, 402, 734
TasI AATT 4 cut(s) 782, 912, 977, 985
TauI GCSGC 8 cut(s) 8, 350, 437, 440, 456, 476, 577, 618
TfiI GAWTC 1 cut(s) 287
Tru1I TTAA 1 cut(s) 411
Tru9I TTAA 1 cut(s) 411
TscAI CASTG 3 cut(s) 382, 896, 942
TseFI GTSAC 4 cut(s) 154, 242, 373, 379
TseI GCWGC 6 cut(s) 121, 163, 203, 350, 353, 577
Tsp45I GTSAC 4 cut(s) 154, 242, 373, 379
TspDTI ATGAA 2 cut(s) 913, 938
TspGWI ACGGA 3 cut(s) 398, 711, 1060
TspRI CASTG 3 cut(s) 382, 896, 942
Tth111I GACNNNGTC 2 cut(s) 29, 89
Vha464I CTTAAG 1 cut(s) 410
VpaK11BI GGWCC 1 cut(s) 385
XbaI TCTAGA 1 cut(s) 10
XcmI CCANNNNNNNNNTGG 1 cut(s) 1061
XmiI GTMKAC 1 cut(s) 402
XspI CTAG 3 cut(s) 11, 317, 879
ZraI GACGTC 1 cut(s) 31
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.