Rmu_sc0006233.1_g000004
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006233.1
Physical Location & Seq
Reverse (-)
19689 .. 21980
2292 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006233.1_g000004.1.cds

Sequence Viewer

Length: 1554 bp
atgaaatatgaaagttggcgacgcatcttcgagatttctcagcttcgggctcggaatcagcttcggttcacggctcagggtcgcaactcagcctcgattgtggacttgggtgataacaaagatacaaatcttgctgtgatctcatccagcataacagcagcatatagtttgtgtggagcctgcttaattatctttcctatagcttggcttgcaaactcttccagttacgtctttcagggtgaacttgtctatggtaacacgagtccattgctcattaccttcaaatttggaagcctcatagcatgttttctcctggccatggcatgcttggctcgatcagcaaagcacttcaaccaagcatactatctaataagctcacaaaacaggaatattaaggccagcgatgtggaggcggcaatcagggcagttatagggggagatcatttccactcacttgggatgagatctctaaaatgtgctggcactctgctgctatggtttttcggtcctatcccaatgtttctttcctctgttgctttagtcatattcctccatgacaattatactggtcgactgtatgttcataatagagtcaattttcaaattcagtcttttcagaaactggggtttagtgagtctgagattttgtgtgcccttcatgaagataatttgattggtagagggccatctggggaagtgtacaaggttgtgttaaccaatggtaaagttattgcagtgaagaaaccgcggagaggaagcgaaaacaacaattttgagaaaggtatggtccaagatgatggctttatagcagcaggggttgacaccttggggaggattatgcacatgaacattatgaagcctaggtattgttgtactactagccagctcttggtttatgattacatgccaaatggtagtcttggtgattttctgcacaataagaaagcaggtttgctgaattggcctacaaggtttaagattgctcttggtgctgctgaggggatttcctatctgcatcatgattgttctccttctattgttcatagaaatgtgaaatcaaacaatatattgttggatggtgatttcagagctcgagtggtggattttggaacaactaatggcattgatgcatctggaagaggcccagtcattgcaggtgcttgtggttacattgctccagaatttccgcacgcacacgggttgaataggaaaagtgatatatacaactttggtgtggtgatgctggaattggttactgggaaacttccagttaaaccggaaccaggagaaaatgacctggtgaagtgggtccatagaactttgcatcagaaaggattggaccatgtccttgaccccaagcttgattcttgttacaaggaagaagtacacaaggtcctcaacattgggcttcgctgcactagttctcttccagtgaatcgaccatccatgagaagagtggtggaattgttgcaagaagtggcagaggagcatccccatattgctttgtcaccctattactctgaagatgcctcagatcatggaagagttgcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

517

Amino Acids

57.33

Weight (kDa)

8.79

Isoelectric Point (pI)

39.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1145
Acc36I ACCTGC 2 cut(s) 938, 1145
AccB7I CCANNNNNTGG 1 cut(s) 889
AccI GTMKAC 1 cut(s) 571
AccII CGCG 1 cut(s) 748
AciI CCGC 4 cut(s) 413, 746, 748, 1187
AcoI YGGCCR 1 cut(s) 315
AcsI RAATTY 3 cut(s) 284, 603, 1181
AcuI CTGAAG 1 cut(s) 1542
AfaI GTAC 3 cut(s) 701, 874, 1386
AfiI CCNNNNNNNGG 5 cut(s) 319, 752, 831, 889, 1283
AgsI TTSAA 4 cut(s) 283, 352, 602, 1204
AhlI ACTAGT 1 cut(s) 1418
AjnI CCWGG 3 cut(s) 312, 1282, 1296
AjuI GAANNNNNNNTTGG 2 cut(s) 508, 540
AluBI AGCT 7 cut(s) 43, 61, 203, 375, 886, 1091, 1360
AluI AGCT 7 cut(s) 43, 61, 203, 375, 886, 1091, 1360
Alw21I GWGCWC 1 cut(s) 1093
AlwNI CAGNNNCTG 1 cut(s) 622
Ama87I CYCGRG 1 cut(s) 1092
AoxI GGCC 5 cut(s) 315, 396, 683, 962, 1141
ApeKI GCWGC 5 cut(s) 158, 490, 809, 992, 1413
ApoI RAATTY 3 cut(s) 284, 603, 1181
AspA2I CCTAGG 1 cut(s) 860
AspS9I GGNCC 7 cut(s) 506, 683, 787, 1142, 1309, 1339, 1393
AsuHPI GGTGA 7 cut(s) 122, 251, 935, 1091, 1249, 1312, 1500
AvaI CYCGRG 1 cut(s) 1092
AvaII GGWCC 5 cut(s) 506, 787, 1309, 1339, 1393
AvrII CCTAGG 1 cut(s) 860
BaeGI GKGCMC 1 cut(s) 655
BalI TGGCCA 1 cut(s) 317
BanII GRGCYC 2 cut(s) 52, 1093
BauI CACGAG 1 cut(s) 259
Bbv12I GWGCWC 1 cut(s) 1093
BbvCI CCTCAGC 1 cut(s) 996
BbvI GCAGC 5 cut(s) 170, 477, 821, 979, 1400
BccI CCATC 4 cut(s) 694, 791, 1070, 1450
BceAI ACGGC 1 cut(s) 87
BcgI CGANNNNNNTGC 2 cut(s) 250, 284
BciT130I CCWGG 3 cut(s) 314, 1284, 1298
BcuI ACTAGT 1 cut(s) 1418
BfaI CTAG 3 cut(s) 861, 879, 1419
BfmI CTRYAG 1 cut(s) 198
BfuAI ACCTGC 2 cut(s) 938, 1145
BglII AGATCT 1 cut(s) 464
BisI GCNGC 6 cut(s) 159, 414, 491, 810, 993, 1414
BlnI CCTAGG 1 cut(s) 860
BlsI GCNGC 6 cut(s) 160, 415, 492, 811, 994, 1415
Bme1390I CCNGG 3 cut(s) 314, 1284, 1298
Bme18I GGWCC 5 cut(s) 506, 787, 1309, 1339, 1393
BmeT110I CYCGRG 1 cut(s) 1092
BmgT120I GGNCC 7 cut(s) 506, 683, 787, 1142, 1309, 1339, 1393
BmiI GGNNCC 3 cut(s) 178, 1281, 1310
BmrFI CCNGG 3 cut(s) 314, 1284, 1298
BmrI ACTGGG 3 cut(s) 632, 1139, 1266
BmsI GCATC 8 cut(s) 33, 1024, 1117, 1139, 1230, 1333, 1498, 1516
BmuI ACTGGG 3 cut(s) 632, 1139, 1266
BpmI CTGGAG 1 cut(s) 1161
Bpu10I CCTNAGC 2 cut(s) 75, 996
BsaBI GATNNNNATC 1 cut(s) 126
BsaJI CCNNGG 4 cut(s) 318, 746, 825, 860
BsaWI WCCGGW 1 cut(s) 1276
Bsc4I CCNNNNNNNGG 5 cut(s) 319, 752, 831, 889, 1283
Bse1I ACTGG 7 cut(s) 222, 571, 627, 1145, 1261, 1268, 1430
Bse3DI GCAATG 3 cut(s) 266, 1149, 1170
Bse8I GATNNNNATC 1 cut(s) 126
BseBI CCWGG 3 cut(s) 314, 1284, 1298
BseDI CCNNGG 4 cut(s) 318, 746, 825, 860
BseGI GGATG 5 cut(s) 143, 465, 1081, 1442, 1489
BseJI GATNNNNATC 1 cut(s) 126
BseLI CCNNNNNNNGG 5 cut(s) 319, 752, 831, 889, 1283
BseMI GCAATG 3 cut(s) 266, 1149, 1170
BseMII CTCAG 6 cut(s) 53, 89, 102, 630, 987, 1545
BseNI ACTGG 7 cut(s) 222, 571, 627, 1145, 1261, 1268, 1430
BseRI GAGGAG 1 cut(s) 1499
BseSI GKGCMC 1 cut(s) 655
BseXI GCAGC 5 cut(s) 170, 477, 821, 979, 1400
BsgI GTGCAG 2 cut(s) 917, 1399
Bsh1236I CGCG 1 cut(s) 748
BshFI GGCC 5 cut(s) 317, 398, 685, 964, 1143
BsiHKAI GWGCWC 1 cut(s) 1093
BsiHKCI CYCGRG 1 cut(s) 1092
BsiSI CCGG 1 cut(s) 1277
BslI CCNNNNNNNGG 5 cut(s) 319, 752, 831, 889, 1283
BsnI GGCC 5 cut(s) 317, 398, 685, 964, 1143
BsoBI CYCGRG 1 cut(s) 1092
Bsp1286I GDGCHC 3 cut(s) 52, 655, 1093
Bsp1407I TGTACA 1 cut(s) 699
Bsp143I GATC 5 cut(s) 138, 335, 439, 464, 1534
Bsp19I CCATGG 1 cut(s) 318
BspACI CCGC 4 cut(s) 413, 746, 748, 1187
BspANI GGCC 5 cut(s) 317, 398, 685, 964, 1143
BspCNI CTCAG 6 cut(s) 52, 88, 101, 631, 988, 1544
BspFNI CGCG 1 cut(s) 748
BspHI TCATGA 2 cut(s) 658, 1018
BspLI GGNNCC 3 cut(s) 178, 1281, 1310
BspMI ACCTGC 2 cut(s) 938, 1145
BsrDI GCAATG 3 cut(s) 266, 1149, 1170
BsrGI TGTACA 1 cut(s) 699
BsrI ACTGG 7 cut(s) 222, 571, 627, 1145, 1261, 1268, 1430
BssECI CCNNGG 4 cut(s) 318, 746, 825, 860
BssMI GATC 5 cut(s) 138, 335, 439, 464, 1534
BssSI CACGAG 1 cut(s) 259
BssT1I CCWWGG 3 cut(s) 318, 825, 860
Bst2BI CACGAG 1 cut(s) 259
Bst2UI CCWGG 3 cut(s) 314, 1284, 1298
Bst4CI ACNGT 1 cut(s) 576
Bst6I CTCTTC 5 cut(s) 223, 1132, 1431, 1447, 1537
BstAUI TGTACA 1 cut(s) 699
BstC8I GCNNGC 7 cut(s) 181, 210, 325, 400, 481, 884, 1191
BstDEI CTNAG 6 cut(s) 39, 75, 88, 639, 996, 1531
BstDSI CCRYGG 2 cut(s) 318, 746
BstENI CCTNNNNNAGG 1 cut(s) 829
BstF5I GGATG 5 cut(s) 143, 465, 1081, 1442, 1489
BstFNI CGCG 1 cut(s) 748
BstKTI GATC 5 cut(s) 141, 338, 442, 467, 1537
BstMBI GATC 5 cut(s) 138, 335, 439, 464, 1534
BstMWI GCNNNNNNNGC 6 cut(s) 209, 329, 338, 422, 961, 989
BstNI CCWGG 3 cut(s) 314, 1284, 1298
BstNSI RCATGY 3 cut(s) 306, 327, 907
BstSCI CCNGG 3 cut(s) 312, 1282, 1296
BstSFI CTRYAG 1 cut(s) 198
BstSLI GKGCMC 1 cut(s) 655
BstUI CGCG 1 cut(s) 748
BstV1I GCAGC 5 cut(s) 170, 477, 821, 979, 1400
BstX2I RGATCY 1 cut(s) 464
BstXI CCANNNNNNTGG 3 cut(s) 406, 455, 797
BstYI RGATCY 1 cut(s) 464
BsuRI GGCC 5 cut(s) 317, 398, 685, 964, 1143
BtgI CCRYGG 2 cut(s) 318, 746
BtgZI GCGATG 1 cut(s) 417
BtsCI GGATG 5 cut(s) 143, 465, 1081, 1442, 1489
BtsI GCAGTG 1 cut(s) 741
BtsIMutI CAGTG 2 cut(s) 741, 1437
BveI ACCTGC 2 cut(s) 938, 1145
Cac8I GCNNGC 7 cut(s) 181, 210, 325, 400, 481, 884, 1191
CaiI CAGNNNCTG 1 cut(s) 622
CciI TCATGA 2 cut(s) 658, 1018
Cfr13I GGNCC 7 cut(s) 506, 683, 787, 1142, 1309, 1339, 1393
Cfr42I CCGCGG 1 cut(s) 749
CseI GACGC 1 cut(s) 30
CsiI ACCWGGT 1 cut(s) 1296
Csp6I GTAC 3 cut(s) 700, 873, 1385
CviQI GTAC 3 cut(s) 700, 873, 1385
DdeI CTNAG 6 cut(s) 39, 75, 88, 639, 996, 1531
DpnI GATC 5 cut(s) 140, 337, 441, 466, 1536
DpnII GATC 5 cut(s) 138, 335, 439, 464, 1534
EaeI YGGCCR 1 cut(s) 315
Eam1104I CTCTTC 5 cut(s) 223, 1132, 1431, 1447, 1537
EarI CTCTTC 5 cut(s) 223, 1132, 1431, 1447, 1537
Ecl136II GAGCTC 1 cut(s) 1091
Eco130I CCWWGG 3 cut(s) 318, 825, 860
Eco24I GRGCYC 2 cut(s) 52, 1093
Eco47I GGWCC 5 cut(s) 506, 787, 1309, 1339, 1393
Eco53kI GAGCTC 1 cut(s) 1091
Eco57I CTGAAG 1 cut(s) 1542
Eco88I CYCGRG 1 cut(s) 1092
EcoICRI GAGCTC 1 cut(s) 1091
EcoNI CCTNNNNNAGG 1 cut(s) 829
EcoO109I RGGNCCY 1 cut(s) 1393
EcoRII CCWGG 3 cut(s) 312, 1282, 1296
EcoT14I CCWWGG 3 cut(s) 318, 825, 860
EcoT22I ATGCAT 1 cut(s) 1132
EcoT38I GRGCYC 2 cut(s) 52, 1093
ErhI CCWWGG 3 cut(s) 318, 825, 860
FalI AAGNNNNNCTT 1 cut(s) 1534
FblI GTMKAC 1 cut(s) 571
Fnu4HI GCNGC 6 cut(s) 159, 414, 491, 810, 993, 1414
FokI GGATG 5 cut(s) 130, 472, 1088, 1429, 1476
FriOI GRGCYC 2 cut(s) 52, 1093
Fsp4HI GCNGC 6 cut(s) 159, 414, 491, 810, 993, 1414
FspBI CTAG 3 cut(s) 861, 879, 1419
GluI GCNGC 6 cut(s) 159, 414, 491, 810, 993, 1414
GsuI CTGGAG 1 cut(s) 1161
HaeIII GGCC 5 cut(s) 317, 398, 685, 964, 1143
HapII CCGG 1 cut(s) 1277
HgaI GACGC 1 cut(s) 30
HincII GTYRAC 3 cut(s) 572, 714, 820
HindII GTYRAC 3 cut(s) 572, 714, 820
HindIII AAGCTT 1 cut(s) 1358
HinfI GANTC 6 cut(s) 55, 262, 591, 635, 1364, 1435
HpaI GTTAAC 1 cut(s) 714
HpaII CCGG 1 cut(s) 1277
HphI GGTGA 7 cut(s) 122, 251, 935, 1091, 1249, 1312, 1500
Hpy166II GTNNAC 8 cut(s) 69, 103, 242, 572, 700, 714, 820, 1387
Hpy188I TCNGA 7 cut(s) 54, 618, 640, 1088, 1329, 1522, 1534
Hpy188III TCNNGA 5 cut(s) 31, 659, 1019, 1134, 1178
Hpy8I GTNNAC 8 cut(s) 69, 103, 242, 572, 700, 714, 820, 1387
Hpy99I CGWCG 1 cut(s) 24
HpyAV CCTTC 3 cut(s) 289, 665, 1041
HpyCH4III ACNGT 1 cut(s) 576
HpyCH4IV ACGT 1 cut(s) 228
HpyF10VI GCNNNNNNNGC 6 cut(s) 209, 329, 338, 422, 961, 989
HpyF3I CTNAG 6 cut(s) 39, 75, 88, 639, 996, 1531
HpySE526I ACGT 1 cut(s) 228
KspAI GTTAAC 1 cut(s) 714
KspI CCGCGG 1 cut(s) 749
Kzo9I GATC 5 cut(s) 138, 335, 439, 464, 1534
LmnI GCTCC 3 cut(s) 176, 1180, 1486
Lsp1109I GCAGC 5 cut(s) 170, 477, 821, 979, 1400
LweI GCATC 8 cut(s) 33, 1024, 1117, 1139, 1230, 1333, 1498, 1516
MabI ACCWGGT 1 cut(s) 1296
MaeI CTAG 3 cut(s) 861, 879, 1419
MaeII ACGT 1 cut(s) 228
MaeIII GTNAC 6 cut(s) 224, 254, 1166, 1252, 1370, 1506
MalI GATC 5 cut(s) 140, 337, 441, 466, 1536
MboI GATC 5 cut(s) 138, 335, 439, 464, 1534
MflI RGATCY 1 cut(s) 464
MhlI GDGCHC 3 cut(s) 52, 655, 1093
MlsI TGGCCA 1 cut(s) 317
MluNI TGGCCA 1 cut(s) 317
MlyI GAGTC 3 cut(s) 271, 600, 644
MmeI TCCRAC 1 cut(s) 1053
Mox20I TGGCCA 1 cut(s) 317
Mph1103I ATGCAT 1 cut(s) 1132
MscI TGGCCA 1 cut(s) 317
MseI TTAA 5 cut(s) 185, 393, 713, 975, 1272
MslI CAYNNNNRTG 1 cut(s) 1047
Msp20I TGGCCA 1 cut(s) 317
MspA1I CMGCKG 1 cut(s) 748
MspI CCGG 1 cut(s) 1277
MspR9I CCNGG 3 cut(s) 314, 1284, 1298
MvaI CCWGG 3 cut(s) 314, 1284, 1298
MvnI CGCG 1 cut(s) 748
MwoI GCNNNNNNNGC 6 cut(s) 209, 329, 338, 422, 961, 989
NcoI CCATGG 1 cut(s) 318
NdeII GATC 5 cut(s) 138, 335, 439, 464, 1534
NlaIV GGNNCC 3 cut(s) 178, 1281, 1310
NmuCI GTSAC 1 cut(s) 1506
NsiI ATGCAT 1 cut(s) 1132
NspI RCATGY 3 cut(s) 306, 327, 907
PaeI GCATGC 1 cut(s) 327
PaeR7I CTCGAG 1 cut(s) 1092
PagI TCATGA 2 cut(s) 658, 1018
PaqCI CACCTGC 1 cut(s) 1145
PfeI GAWTC 3 cut(s) 55, 1364, 1435
PflFI GACNNNGTC 1 cut(s) 1343
PflMI CCANNNNNTGG 1 cut(s) 889
PkrI GCNGC 6 cut(s) 160, 415, 492, 811, 994, 1415
PleI GAGTC 3 cut(s) 270, 599, 643
PpsI GAGTC 3 cut(s) 270, 599, 643
PpuMI RGGWCCY 1 cut(s) 1393
Psp124BI GAGCTC 1 cut(s) 1093
Psp5II RGGWCCY 1 cut(s) 1393
Psp6I CCWGG 3 cut(s) 312, 1282, 1296
PspGI CCWGG 3 cut(s) 312, 1282, 1296
PspN4I GGNNCC 3 cut(s) 178, 1281, 1310
PspPI GGNCC 7 cut(s) 506, 683, 787, 1142, 1309, 1339, 1393
PspPPI RGGWCCY 1 cut(s) 1393
PspXI VCTCGAGB 1 cut(s) 1092
PstNI CAGNNNCTG 1 cut(s) 622
PsuI RGATCY 1 cut(s) 464
PsyI GACNNNGTC 1 cut(s) 1343
RsaI GTAC 3 cut(s) 701, 874, 1386
RsaNI GTAC 3 cut(s) 700, 873, 1385
RseI CAYNNNNRTG 1 cut(s) 1047
SacI GAGCTC 1 cut(s) 1093
SacII CCGCGG 1 cut(s) 749
SalI GTCGAC 1 cut(s) 570
SaqAI TTAA 5 cut(s) 185, 393, 713, 975, 1272
SatI GCNGC 6 cut(s) 159, 414, 491, 810, 993, 1414
Sau3AI GATC 5 cut(s) 138, 335, 439, 464, 1534
Sau96I GGNCC 7 cut(s) 506, 683, 787, 1142, 1309, 1339, 1393
SchI GAGTC 3 cut(s) 271, 600, 644
ScrFI CCNGG 3 cut(s) 314, 1284, 1298
SduI GDGCHC 3 cut(s) 52, 655, 1093
SexAI ACCWGGT 1 cut(s) 1296
SfaNI GCATC 8 cut(s) 33, 1024, 1117, 1139, 1230, 1333, 1498, 1516
SfcI CTRYAG 1 cut(s) 198
Sfr274I CTCGAG 1 cut(s) 1092
Sfr303I CCGCGG 1 cut(s) 749
SgrBI CCGCGG 1 cut(s) 749
SinI GGWCC 5 cut(s) 506, 787, 1309, 1339, 1393
SlaI CTCGAG 1 cut(s) 1092
SmiMI CAYNNNNRTG 1 cut(s) 1047
SmlI CTYRAG 1 cut(s) 1092
SmoI CTYRAG 1 cut(s) 1092
SpeI ACTAGT 1 cut(s) 1418
SphI GCATGC 1 cut(s) 327
SsiI CCGC 4 cut(s) 413, 746, 748, 1187
SspI AATATT 1 cut(s) 391
SspMI CTAG 3 cut(s) 861, 879, 1419
SstI GAGCTC 1 cut(s) 1093
StyD4I CCNGG 3 cut(s) 312, 1282, 1296
StyI CCWWGG 3 cut(s) 318, 825, 860
TaaI ACNGT 1 cut(s) 576
TaiI ACGT 1 cut(s) 231
TaqI TCGA 6 cut(s) 30, 95, 334, 571, 1093, 1438
TaqII GACCGA 1 cut(s) 494
TatI WGTACW 3 cut(s) 699, 872, 1384
TauI GCSGC 1 cut(s) 416
TfiI GAWTC 3 cut(s) 55, 1364, 1435
Tru1I TTAA 5 cut(s) 185, 393, 713, 975, 1272
Tru9I TTAA 5 cut(s) 185, 393, 713, 975, 1272
TscAI CASTG 2 cut(s) 741, 1437
TseFI GTSAC 1 cut(s) 1506
TseI GCWGC 5 cut(s) 158, 490, 809, 992, 1413
Tsp45I GTSAC 1 cut(s) 1506
TspDTI ATGAA 8 cut(s) 17, 24, 572, 647, 675, 860, 869, 1031
TspRI CASTG 2 cut(s) 741, 1437
Tth111I GACNNNGTC 1 cut(s) 1343
Van91I CCANNNNNTGG 1 cut(s) 889
VpaK11BI GGWCC 5 cut(s) 506, 787, 1309, 1339, 1393
XagI CCTNNNNNAGG 1 cut(s) 829
XapI RAATTY 3 cut(s) 284, 603, 1181
XceI RCATGY 3 cut(s) 306, 327, 907
XcmI CCANNNNNNNNNTGG 2 cut(s) 325, 1453
XhoI CTCGAG 1 cut(s) 1092
XmaJI CCTAGG 1 cut(s) 860
XmiI GTMKAC 1 cut(s) 571
XspI CTAG 3 cut(s) 861, 879, 1419
Zsp2I ATGCAT 1 cut(s) 1132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.