Rmu_sc0008176.1_g000004
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008176.1
Physical Location & Seq
Reverse (-)
22720 .. 24955
2236 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008176.1_g000004.1.cds

Sequence Viewer

Length: 1566 bp
atgttattgaacaccgggattgggattggatggtttcggcagagaagcttgaggattgaagggtgtggattgatggtaactgttggaattgcagaggtgatcgggattgggatgggagaactaagaagagagatgggtgcccatagtggtgatagcaaagatacaagtcttgctgtgatctcatccagcataacagcagcatatagtttgtgtggagcctgcttaatgatctttcctatagcttggcttgcaaactcctccagtttcatctttcagagtgaacttgtctatggtaacacgagcccattgctcattaccttcaagtttggaagcctcatagcatgttttctcctggccatggcatgctttgctcgatcagcaaagcacttcaaccaagcatactatctaatgagctcccagaacagcaatattgaggccggagatgtggaggcggcaaccagggcagttatagggggaggtcatttcaaatctcttgggattagatgtctacaatgtgctggcattctgctgctatggtttttcggtcctatcccgatgtttgtttcatctgtggctttagtcatattcctccatgacaattatactggtcgacaatatcatgttcgtaatagagtcgattggcaaattcagtcttttcagaaactgaggatttgtgagtctgagattttgtttgcccttcgtgaagataatgtgattggtagagggccatctgggaaagtgtacaaggtcgtgttaagcaatcataaagttattgccgtcaagaagccgtggagagggagagtgaaccagtgtgaaaatgacgatgttgagaaaggtatggtccaagatgatggctctatagcagggtttgacactttggggaggattacgcacaagaacattatgaagctttggtattgttgtactactagagactgccagcagctgttggtttatgattacatgccaaatggtagtcttggtgattgtctgcacaataagaaagcacggttgctgaattggcctacaaggtttaagattgctcttggtgctgctgaggggatttcttatctgcaccatgattgttctccttctattgttcatagaaatgtgaaatcaaacaatatattgttggatggtgatttcggagctcgagtggtggatattggaacaactaatggcgttgatgcatctgtaaaagggccagtcattgcagctgcttgtggttacattgctccagaattttcgcacgcacatgggttgaatgggaagagtgatatatacagctttggtgtggtgatgctggaattggttaccgggaaacttccagttgacccagaactaggagaaaaggacctggtgaagtgggtccgtagcactttggatcagaagggagtggaccatgtccttgaccccaagctcgattcttgttacaaggaagaagtatgcaaggtcctcgatattgggcttctctgcaccgattctcgtccagtcaatcgaccatccatgagaagagtggtggaattgttgcaagaagtgggcagaggagcatccccatattgctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

521

Amino Acids

57.27

Weight (kDa)

8.32

Isoelectric Point (pI)

39.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 137
AccI GTMKAC 2 cut(s) 508, 610
AciI CCGC 1 cut(s) 452
AclWI GGATC 1 cut(s) 1392
AcoI YGGCCR 1 cut(s) 354
AcsI RAATTY 2 cut(s) 645, 1241
AfaI GTAC 2 cut(s) 743, 925
AfiI CCNNNNNNNGG 4 cut(s) 21, 358, 794, 1343
AgsI TTSAA 6 cut(s) 10, 59, 322, 391, 487, 1264
AjnI CCWGG 3 cut(s) 351, 458, 1356
AluBI AGCT 9 cut(s) 48, 242, 414, 910, 946, 1151, 1217, 1287, 1420
AluI AGCT 9 cut(s) 48, 242, 414, 910, 946, 1151, 1217, 1287, 1420
Alw21I GWGCWC 2 cut(s) 416, 1153
Alw26I GTCTC 1 cut(s) 927
AlwI GGATC 1 cut(s) 1392
AlwNI CAGNNNCTG 2 cut(s) 664, 946
Ama87I CYCGRG 1 cut(s) 1152
AoxI GGCC 5 cut(s) 354, 435, 725, 1022, 1202
ApeKI GCWGC 6 cut(s) 197, 529, 943, 1052, 1214, 1217
ApoI RAATTY 2 cut(s) 645, 1241
AspS9I GGNCC 8 cut(s) 545, 725, 841, 1202, 1354, 1369, 1399, 1453
AsuC2I CCSGG 2 cut(s) 16, 1318
AsuHPI GGTGA 6 cut(s) 109, 161, 995, 1151, 1309, 1372
AvaI CYCGRG 1 cut(s) 1152
AvaII GGWCC 6 cut(s) 545, 841, 1354, 1369, 1399, 1453
BaeGI GKGCMC 1 cut(s) 142
BalI TGGCCA 1 cut(s) 356
BanI GGYRCC 1 cut(s) 137
BanII GRGCYC 3 cut(s) 305, 416, 1153
BauI CACGAG 1 cut(s) 298
Bbv12I GWGCWC 2 cut(s) 416, 1153
BbvCI CCTCAGC 1 cut(s) 1056
BbvI GCAGC 6 cut(s) 209, 516, 955, 1039, 1204, 1226
BccI CCATC 8 cut(s) 24, 67, 106, 127, 736, 845, 1130, 1510
BceAI ACGGC 2 cut(s) 761, 772
BcgI CGANNNNNNTGC 4 cut(s) 289, 323, 1438, 1472
BciT130I CCWGG 3 cut(s) 353, 460, 1358
BcnI CCSGG 2 cut(s) 16, 1318
BcoDI GTCTC 1 cut(s) 927
BfaI CTAG 2 cut(s) 930, 1343
BfmI CTRYAG 2 cut(s) 237, 858
BisI GCNGC 7 cut(s) 198, 453, 530, 944, 1053, 1215, 1218
BlsI GCNGC 7 cut(s) 199, 454, 531, 945, 1054, 1216, 1219
Bme1390I CCNGG 5 cut(s) 16, 353, 460, 1318, 1358
Bme18I GGWCC 6 cut(s) 545, 841, 1354, 1369, 1399, 1453
BmeT110I CYCGRG 1 cut(s) 1152
BmgT120I GGNCC 8 cut(s) 545, 725, 841, 1202, 1354, 1369, 1399, 1453
BmiI GGNNCC 3 cut(s) 139, 217, 1370
BmrFI CCNGG 5 cut(s) 16, 353, 460, 1318, 1358
BmsI GCATC 4 cut(s) 1177, 1199, 1290, 1559
BpmI CTGGAG 2 cut(s) 244, 1221
Bpu10I CCTNAGC 1 cut(s) 1056
BpuEI CTTGAG 1 cut(s) 70
BpuMI CCSGG 2 cut(s) 16, 1318
BsaJI CCNNGG 3 cut(s) 357, 459, 788
BsaXI ACNNNNNCTCC 2 cut(s) 1140, 1170
Bsc4I CCNNNNNNNGG 4 cut(s) 21, 358, 794, 1343
Bse1I ACTGG 6 cut(s) 261, 610, 808, 1205, 1328, 1490
Bse3DI GCAATG 3 cut(s) 305, 1209, 1230
BseBI CCWGG 3 cut(s) 353, 460, 1358
BseDI CCNNGG 3 cut(s) 357, 459, 788
BseGI GGATG 6 cut(s) 35, 117, 182, 1141, 1502, 1550
BseLI CCNNNNNNNGG 4 cut(s) 21, 358, 794, 1343
BseMI GCAATG 3 cut(s) 305, 1209, 1230
BseMII CTCAG 3 cut(s) 656, 672, 1047
BseNI ACTGG 6 cut(s) 261, 610, 808, 1205, 1328, 1490
BseRI GAGGAG 2 cut(s) 247, 1560
BseSI GKGCMC 1 cut(s) 142
BseXI GCAGC 6 cut(s) 209, 516, 955, 1039, 1204, 1226
BsgI GTGCAG 3 cut(s) 977, 1058, 1459
BshFI GGCC 5 cut(s) 356, 437, 727, 1024, 1204
BshNI GGYRCC 1 cut(s) 137
BsiHKAI GWGCWC 2 cut(s) 416, 1153
BsiHKCI CYCGRG 1 cut(s) 1152
BsiSI CCGG 3 cut(s) 15, 438, 1317
BslI CCNNNNNNNGG 4 cut(s) 21, 358, 794, 1343
BsmAI GTCTC 1 cut(s) 927
BsmI GAATGC 1 cut(s) 522
BsnI GGCC 5 cut(s) 356, 437, 727, 1024, 1204
BsoBI CYCGRG 1 cut(s) 1152
Bsp1286I GDGCHC 4 cut(s) 142, 305, 416, 1153
Bsp1407I TGTACA 1 cut(s) 741
Bsp143I GATC 5 cut(s) 99, 177, 228, 374, 1384
Bsp19I CCATGG 1 cut(s) 357
BspACI CCGC 1 cut(s) 452
BspANI GGCC 5 cut(s) 356, 437, 727, 1024, 1204
BspCNI CTCAG 3 cut(s) 657, 673, 1048
BspLI GGNNCC 3 cut(s) 139, 217, 1370
BspPI GGATC 1 cut(s) 1392
BspT107I GGYRCC 1 cut(s) 137
BsrDI GCAATG 3 cut(s) 305, 1209, 1230
BsrGI TGTACA 1 cut(s) 741
BsrI ACTGG 6 cut(s) 261, 610, 808, 1205, 1328, 1490
BssECI CCNNGG 3 cut(s) 357, 459, 788
BssMI GATC 5 cut(s) 99, 177, 228, 374, 1384
BssSI CACGAG 1 cut(s) 298
BssT1I CCWWGG 1 cut(s) 357
Bst2BI CACGAG 1 cut(s) 298
Bst2UI CCWGG 3 cut(s) 353, 460, 1358
Bst4CI ACNGT 2 cut(s) 82, 1011
Bst6I CTCTTC 3 cut(s) 121, 1265, 1507
BstAPI GCANNNNNTGC 1 cut(s) 368
BstAUI TGTACA 1 cut(s) 741
BstC8I GCNNGC 6 cut(s) 220, 249, 364, 520, 941, 1251
BstDEI CTNAG 4 cut(s) 122, 665, 681, 1056
BstDSI CCRYGG 2 cut(s) 357, 788
BstEII GGTNACC 1 cut(s) 1312
BstF5I GGATG 6 cut(s) 35, 117, 182, 1141, 1502, 1550
BstKTI GATC 5 cut(s) 102, 180, 231, 377, 1387
BstMAI GTCTC 1 cut(s) 927
BstMBI GATC 5 cut(s) 99, 177, 228, 374, 1384
BstMWI GCNNNNNNNGC 6 cut(s) 248, 368, 377, 461, 1021, 1049
BstNI CCWGG 3 cut(s) 353, 460, 1358
BstNSI RCATGY 3 cut(s) 345, 366, 967
BstPI GGTNACC 1 cut(s) 1312
BstSCI CCNGG 5 cut(s) 14, 351, 458, 1316, 1356
BstSFI CTRYAG 2 cut(s) 237, 858
BstSLI GKGCMC 1 cut(s) 142
BstV1I GCAGC 6 cut(s) 209, 516, 955, 1039, 1204, 1226
BstXI CCANNNNNNTGG 1 cut(s) 851
BsuRI GGCC 5 cut(s) 356, 437, 727, 1024, 1204
BtgI CCRYGG 2 cut(s) 357, 788
BtsCI GGATG 6 cut(s) 35, 117, 182, 1141, 1502, 1550
BtsIMutI CAGTG 1 cut(s) 815
Cac8I GCNNGC 6 cut(s) 220, 249, 364, 520, 941, 1251
CaiI CAGNNNCTG 2 cut(s) 664, 946
Cfr13I GGNCC 8 cut(s) 545, 725, 841, 1202, 1354, 1369, 1399, 1453
CsiI ACCWGGT 1 cut(s) 1356
Csp6I GTAC 2 cut(s) 742, 924
CviQI GTAC 2 cut(s) 742, 924
DdeI CTNAG 4 cut(s) 122, 665, 681, 1056
DpnI GATC 5 cut(s) 101, 179, 230, 376, 1386
DpnII GATC 5 cut(s) 99, 177, 228, 374, 1384
EaeI YGGCCR 1 cut(s) 354
Eam1104I CTCTTC 3 cut(s) 121, 1265, 1507
EarI CTCTTC 3 cut(s) 121, 1265, 1507
Ecl136II GAGCTC 2 cut(s) 414, 1151
Eco130I CCWWGG 1 cut(s) 357
Eco24I GRGCYC 3 cut(s) 305, 416, 1153
Eco47I GGWCC 6 cut(s) 545, 841, 1354, 1369, 1399, 1453
Eco53kI GAGCTC 2 cut(s) 414, 1151
Eco88I CYCGRG 1 cut(s) 1152
Eco91I GGTNACC 1 cut(s) 1312
EcoICRI GAGCTC 2 cut(s) 414, 1151
EcoO109I RGGNCCY 2 cut(s) 1354, 1453
EcoO65I GGTNACC 1 cut(s) 1312
EcoRII CCWGG 3 cut(s) 351, 458, 1356
EcoT14I CCWWGG 1 cut(s) 357
EcoT22I ATGCAT 1 cut(s) 1192
EcoT38I GRGCYC 3 cut(s) 305, 416, 1153
ErhI CCWWGG 1 cut(s) 357
FblI GTMKAC 2 cut(s) 508, 610
Fnu4HI GCNGC 7 cut(s) 198, 453, 530, 944, 1053, 1215, 1218
FokI GGATG 6 cut(s) 42, 124, 169, 1148, 1489, 1537
FriOI GRGCYC 3 cut(s) 305, 416, 1153
Fsp4HI GCNGC 7 cut(s) 198, 453, 530, 944, 1053, 1215, 1218
FspBI CTAG 2 cut(s) 930, 1343
GluI GCNGC 7 cut(s) 198, 453, 530, 944, 1053, 1215, 1218
GsuI CTGGAG 2 cut(s) 244, 1221
HaeIII GGCC 5 cut(s) 356, 437, 727, 1024, 1204
HapII CCGG 3 cut(s) 15, 438, 1317
HincII GTYRAC 2 cut(s) 611, 1333
HindII GTYRAC 2 cut(s) 611, 1333
HindIII AAGCTT 2 cut(s) 46, 908
HinfI GANTC 4 cut(s) 633, 677, 1424, 1481
HpaII CCGG 3 cut(s) 15, 438, 1317
HphI GGTGA 6 cut(s) 109, 161, 995, 1151, 1309, 1372
Hpy166II GTNNAC 7 cut(s) 281, 509, 611, 742, 805, 1333, 1399
Hpy188I TCNGA 5 cut(s) 276, 660, 682, 1148, 1389
Hpy188III TCNNGA 5 cut(s) 103, 553, 701, 781, 1238
Hpy8I GTNNAC 7 cut(s) 281, 509, 611, 742, 805, 1333, 1399
HpyAV CCTTC 5 cut(s) 53, 328, 707, 1101, 1384
HpyCH4III ACNGT 2 cut(s) 82, 1011
HpyCH4V TGCA 9 cut(s) 92, 251, 994, 1075, 1190, 1214, 1449, 1476, 1531
HpyF10VI GCNNNNNNNGC 6 cut(s) 248, 368, 377, 461, 1021, 1049
HpyF3I CTNAG 4 cut(s) 122, 665, 681, 1056
Kzo9I GATC 5 cut(s) 99, 177, 228, 374, 1384
LmnI GCTCC 5 cut(s) 215, 419, 1148, 1240, 1547
Lsp1109I GCAGC 6 cut(s) 209, 516, 955, 1039, 1204, 1226
LweI GCATC 4 cut(s) 1177, 1199, 1290, 1559
MabI ACCWGGT 1 cut(s) 1356
MaeI CTAG 2 cut(s) 930, 1343
MaeIII GTNAC 5 cut(s) 76, 293, 1226, 1312, 1430
MalI GATC 5 cut(s) 101, 179, 230, 376, 1386
MboI GATC 5 cut(s) 99, 177, 228, 374, 1384
MboII GAAGA 5 cut(s) 138, 716, 1282, 1451, 1524
MhlI GDGCHC 4 cut(s) 142, 305, 416, 1153
MlsI TGGCCA 1 cut(s) 356
MluCI AATT 7 cut(s) 87, 598, 645, 1018, 1241, 1307, 1523
MluNI TGGCCA 1 cut(s) 356
MlyI GAGTC 2 cut(s) 642, 686
MmeI TCCRAC 2 cut(s) 64, 1113
Mox20I TGGCCA 1 cut(s) 356
Mph1103I ATGCAT 1 cut(s) 1192
MscI TGGCCA 1 cut(s) 356
MseI TTAA 3 cut(s) 224, 755, 1035
MslI CAYNNNNRTG 3 cut(s) 147, 1107, 1254
Msp20I TGGCCA 1 cut(s) 356
MspA1I CMGCKG 2 cut(s) 946, 1217
MspI CCGG 3 cut(s) 15, 438, 1317
MspR9I CCNGG 5 cut(s) 16, 353, 460, 1318, 1358
Mva1269I GAATGC 1 cut(s) 522
MvaI CCWGG 3 cut(s) 353, 460, 1358
MwoI GCNNNNNNNGC 6 cut(s) 248, 368, 377, 461, 1021, 1049
NciI CCSGG 2 cut(s) 16, 1318
NcoI CCATGG 1 cut(s) 357
NdeII GATC 5 cut(s) 99, 177, 228, 374, 1384
NlaIV GGNNCC 3 cut(s) 139, 217, 1370
NsiI ATGCAT 1 cut(s) 1192
NspI RCATGY 3 cut(s) 345, 366, 967
PaeI GCATGC 1 cut(s) 366
PaeR7I CTCGAG 1 cut(s) 1152
PctI GAATGC 1 cut(s) 522
PfeI GAWTC 2 cut(s) 1424, 1481
PflFI GACNNNGTC 1 cut(s) 1403
PkrI GCNGC 7 cut(s) 199, 454, 531, 945, 1054, 1216, 1219
PleI GAGTC 2 cut(s) 641, 685
PpsI GAGTC 2 cut(s) 641, 685
PpuMI RGGWCCY 2 cut(s) 1354, 1453
Psp124BI GAGCTC 2 cut(s) 416, 1153
Psp5II RGGWCCY 2 cut(s) 1354, 1453
Psp6I CCWGG 3 cut(s) 351, 458, 1356
PspEI GGTNACC 1 cut(s) 1312
PspGI CCWGG 3 cut(s) 351, 458, 1356
PspN4I GGNNCC 3 cut(s) 139, 217, 1370
PspPI GGNCC 8 cut(s) 545, 725, 841, 1202, 1354, 1369, 1399, 1453
PspPPI RGGWCCY 2 cut(s) 1354, 1453
PspXI VCTCGAGB 1 cut(s) 1152
PstNI CAGNNNCTG 2 cut(s) 664, 946
PsyI GACNNNGTC 1 cut(s) 1403
PvuII CAGCTG 2 cut(s) 946, 1217
RsaI GTAC 2 cut(s) 743, 925
RsaNI GTAC 2 cut(s) 742, 924
RseI CAYNNNNRTG 3 cut(s) 147, 1107, 1254
SacI GAGCTC 2 cut(s) 416, 1153
SalI GTCGAC 1 cut(s) 609
SaqAI TTAA 3 cut(s) 224, 755, 1035
SatI GCNGC 7 cut(s) 198, 453, 530, 944, 1053, 1215, 1218
Sau3AI GATC 5 cut(s) 99, 177, 228, 374, 1384
Sau96I GGNCC 8 cut(s) 545, 725, 841, 1202, 1354, 1369, 1399, 1453
SchI GAGTC 2 cut(s) 642, 686
ScrFI CCNGG 5 cut(s) 16, 353, 460, 1318, 1358
SduI GDGCHC 4 cut(s) 142, 305, 416, 1153
SexAI ACCWGGT 1 cut(s) 1356
SfaNI GCATC 4 cut(s) 1177, 1199, 1290, 1559
SfcI CTRYAG 2 cut(s) 237, 858
Sfr274I CTCGAG 1 cut(s) 1152
SinI GGWCC 6 cut(s) 545, 841, 1354, 1369, 1399, 1453
SlaI CTCGAG 1 cut(s) 1152
SmiMI CAYNNNNRTG 3 cut(s) 147, 1107, 1254
SmlI CTYRAG 2 cut(s) 49, 1152
SmoI CTYRAG 2 cut(s) 49, 1152
SphI GCATGC 1 cut(s) 366
Sse9I AATT 7 cut(s) 87, 598, 645, 1018, 1241, 1307, 1523
SsiI CCGC 1 cut(s) 452
SspI AATATT 1 cut(s) 430
SspMI CTAG 2 cut(s) 930, 1343
SstI GAGCTC 2 cut(s) 416, 1153
StyD4I CCNGG 5 cut(s) 14, 351, 458, 1316, 1356
StyI CCWWGG 1 cut(s) 357
TaaI ACNGT 2 cut(s) 82, 1011
TaqI TCGA 7 cut(s) 373, 610, 636, 1153, 1422, 1458, 1498
TaqII GACCGA 1 cut(s) 533
TasI AATT 7 cut(s) 87, 598, 645, 1018, 1241, 1307, 1523
TatI WGTACW 2 cut(s) 741, 923
TauI GCSGC 1 cut(s) 455
TfiI GAWTC 2 cut(s) 1424, 1481
Tru1I TTAA 3 cut(s) 224, 755, 1035
Tru9I TTAA 3 cut(s) 224, 755, 1035
TscAI CASTG 1 cut(s) 815
TseI GCWGC 6 cut(s) 197, 529, 943, 1052, 1214, 1217
TspDTI ATGAA 4 cut(s) 256, 555, 920, 1091
TspGWI ACGGA 1 cut(s) 1361
TspRI CASTG 1 cut(s) 815
Tth111I GACNNNGTC 1 cut(s) 1403
VpaK11BI GGWCC 6 cut(s) 545, 841, 1354, 1369, 1399, 1453
XapI RAATTY 2 cut(s) 645, 1241
XceI RCATGY 3 cut(s) 345, 366, 967
XcmI CCANNNNNNNNNTGG 1 cut(s) 1513
XhoI CTCGAG 1 cut(s) 1152
XmiI GTMKAC 2 cut(s) 508, 610
XspI CTAG 2 cut(s) 930, 1343
Zsp2I ATGCAT 1 cut(s) 1192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.