Rroxscaffold_1G00045190

Protein of unknown function, DUF599

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0013762
Physical Location & Seq
Reverse (-)
64206146 .. 64207423
1278 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00045190.1

Sequence Viewer

Length: 489 bp
ATGCAGGGTGATAACAAAGATAAAAGTCTTGCTTTGATCTCATCCAGCATAGCTGCAGCATATAGTTTGTGTGGAGCCTGCTTAATGATCTTTCCTATAGCTTGGCTTGCAAACTCTTCCAGTTACGTCTTTCAGAGTGAACTTGTCTATGGTAACACGAGCCCATTGCTCATTACCTTCAAGTTTGGAAGCCTCATTGCATGTTTTCTCCTGGCCATGGCATGCTTTGCTCAATCAGCAGAGCACTTCACCCAAGCATACCATCTAATGAACTCCCAAAGCAGCAATATTGAGTCCGGAGATGTGGAGGCGGCAACCAGGGCAGTTATAGGGGAGTCTTTTCAGAAACTGAGGTTTTGTGAGTCTGAGATTTTGTGTGCCCTTCGTGAAGATAATGTGATTGGTAGAGGGCCTTCTGGGAAAGTGTACAAGGTTGTGTTAAGAAATGGTAAAGTTATTGCCGTGAAGAAGCCGTGGAGAGGAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF599

Protein Analysis

162

Amino Acids

17.63

Weight (kDa)

8.21

Isoelectric Point (pI)

50.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF599 PF04654 13 - 101 8.6e-10 Protein of unknown function, DUF599
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 296
AciI CCGC 1 cut(s) 311
AcoI YGGCCR 1 cut(s) 213
AfaI GTAC 1 cut(s) 428
AfiI CCNNNNNNNGG 2 cut(s) 217, 479
AgsI TTSAA 1 cut(s) 181
AjnI CCWGG 2 cut(s) 210, 317
AluBI AGCT 2 cut(s) 53, 101
AluI AGCT 2 cut(s) 53, 101
Alw21I GWGCWC 1 cut(s) 246
AlwNI CAGNNNCTG 1 cut(s) 349
Aor13HI TCCGGA 1 cut(s) 296
AoxI GGCC 2 cut(s) 213, 410
ApeKI GCWGC 3 cut(s) 53, 56, 282
AspS9I GGNCC 1 cut(s) 410
AsuHPI GGTGA 2 cut(s) 20, 241
BaeGI GKGCMC 1 cut(s) 382
BalI TGGCCA 1 cut(s) 215
BanII GRGCYC 1 cut(s) 164
BarI GAAGNNNNNNTAC 2 cut(s) 397, 429
BauI CACGAG 1 cut(s) 157
Bbv12I GWGCWC 1 cut(s) 246
BbvI GCAGC 3 cut(s) 40, 68, 294
BccI CCATC 1 cut(s) 270
BceAI ACGGC 2 cut(s) 446, 457
BcgI CGANNNNNNTGC 2 cut(s) 148, 182
BciT130I CCWGG 2 cut(s) 212, 319
BfmI CTRYAG 2 cut(s) 54, 96
BisI GCNGC 4 cut(s) 54, 57, 283, 312
BlsI GCNGC 4 cut(s) 55, 58, 284, 313
Bme1390I CCNGG 2 cut(s) 212, 319
BmgT120I GGNCC 1 cut(s) 410
BmiI GGNNCC 1 cut(s) 76
BmrFI CCNGG 2 cut(s) 212, 319
BsaJI CCNNGG 3 cut(s) 216, 318, 473
BsaWI WCCGGW 1 cut(s) 296
Bsc4I CCNNNNNNNGG 2 cut(s) 217, 479
Bse1I ACTGG 1 cut(s) 120
Bse3DI GCAATG 2 cut(s) 164, 195
BseAI TCCGGA 1 cut(s) 296
BseBI CCWGG 2 cut(s) 212, 319
BseDI CCNNGG 3 cut(s) 216, 318, 473
BseGI GGATG 1 cut(s) 41
BseLI CCNNNNNNNGG 2 cut(s) 217, 479
BseMI GCAATG 2 cut(s) 164, 195
BseMII CTCAG 2 cut(s) 341, 357
BseNI ACTGG 1 cut(s) 120
BseSI GKGCMC 1 cut(s) 382
BseXI GCAGC 3 cut(s) 40, 68, 294
BshFI GGCC 2 cut(s) 215, 412
BsiHKAI GWGCWC 1 cut(s) 246
BsiSI CCGG 1 cut(s) 297
BslI CCNNNNNNNGG 2 cut(s) 217, 479
BsnI GGCC 2 cut(s) 215, 412
Bsp1286I GDGCHC 3 cut(s) 164, 246, 382
Bsp13I TCCGGA 1 cut(s) 296
Bsp1407I TGTACA 1 cut(s) 426
Bsp143I GATC 2 cut(s) 36, 87
Bsp19I CCATGG 1 cut(s) 216
BspACI CCGC 1 cut(s) 311
BspANI GGCC 2 cut(s) 215, 412
BspCNI CTCAG 2 cut(s) 342, 358
BspEI TCCGGA 1 cut(s) 296
BspLI GGNNCC 1 cut(s) 76
BspMAI CTGCAG 1 cut(s) 58
BsrDI GCAATG 2 cut(s) 164, 195
BsrGI TGTACA 1 cut(s) 426
BsrI ACTGG 1 cut(s) 120
BssECI CCNNGG 3 cut(s) 216, 318, 473
BssMI GATC 2 cut(s) 36, 87
BssSI CACGAG 1 cut(s) 157
BssT1I CCWWGG 1 cut(s) 216
Bst2BI CACGAG 1 cut(s) 157
Bst2UI CCWGG 2 cut(s) 212, 319
Bst6I CTCTTC 1 cut(s) 121
BstAPI GCANNNNNTGC 1 cut(s) 227
BstAUI TGTACA 1 cut(s) 426
BstC8I GCNNGC 3 cut(s) 79, 108, 223
BstDEI CTNAG 2 cut(s) 350, 366
BstDSI CCRYGG 2 cut(s) 216, 473
BstF5I GGATG 1 cut(s) 41
BstKTI GATC 2 cut(s) 39, 90
BstMBI GATC 2 cut(s) 36, 87
BstMWI GCNNNNNNNGC 4 cut(s) 107, 227, 236, 320
BstNI CCWGG 2 cut(s) 212, 319
BstNSI RCATGY 2 cut(s) 204, 225
BstSCI CCNGG 2 cut(s) 210, 317
BstSFI CTRYAG 2 cut(s) 54, 96
BstSLI GKGCMC 1 cut(s) 382
BstV1I GCAGC 3 cut(s) 40, 68, 294
BsuRI GGCC 2 cut(s) 215, 412
BtgI CCRYGG 2 cut(s) 216, 473
BtsCI GGATG 1 cut(s) 41
Cac8I GCNNGC 3 cut(s) 79, 108, 223
CaiI CAGNNNCTG 1 cut(s) 349
Cfr13I GGNCC 1 cut(s) 410
Csp6I GTAC 1 cut(s) 427
CviAII CATG 3 cut(s) 201, 217, 222
CviJI RGCY 9 cut(s) 53, 77, 101, 106, 162, 192, 215, 412, 472
CviKI_1 RGCY 9 cut(s) 53, 77, 101, 106, 162, 192, 215, 412, 472
CviQI GTAC 1 cut(s) 427
DdeI CTNAG 2 cut(s) 350, 366
DpnI GATC 2 cut(s) 38, 89
DpnII GATC 2 cut(s) 36, 87
EaeI YGGCCR 1 cut(s) 213
Eam1104I CTCTTC 1 cut(s) 121
EarI CTCTTC 1 cut(s) 121
Eco130I CCWWGG 1 cut(s) 216
Eco24I GRGCYC 1 cut(s) 164
EcoO109I RGGNCCY 1 cut(s) 410
EcoRII CCWGG 2 cut(s) 210, 317
EcoT14I CCWWGG 1 cut(s) 216
EcoT38I GRGCYC 1 cut(s) 164
ErhI CCWWGG 1 cut(s) 216
FaeI CATG 3 cut(s) 204, 220, 225
FalI AAGNNNNNCTT 2 cut(s) 16, 48
FatI CATG 3 cut(s) 200, 216, 221
Fnu4HI GCNGC 4 cut(s) 54, 57, 283, 312
FokI GGATG 1 cut(s) 28
FriOI GRGCYC 1 cut(s) 164
Fsp4HI GCNGC 4 cut(s) 54, 57, 283, 312
GluI GCNGC 4 cut(s) 54, 57, 283, 312
HaeIII GGCC 2 cut(s) 215, 412
HapII CCGG 1 cut(s) 297
Hin1II CATG 3 cut(s) 204, 220, 225
HinfI GANTC 3 cut(s) 293, 335, 362
HpaII CCGG 1 cut(s) 297
HphI GGTGA 2 cut(s) 20, 241
Hpy166II GTNNAC 2 cut(s) 140, 427
Hpy188I TCNGA 3 cut(s) 135, 345, 367
Hpy188III TCNNGA 2 cut(s) 297, 386
Hpy8I GTNNAC 2 cut(s) 140, 427
HpyAV CCTTC 3 cut(s) 187, 392, 423
HpyCH4IV ACGT 1 cut(s) 126
HpyCH4V TGCA 4 cut(s) 4, 56, 110, 200
HpyF10VI GCNNNNNNNGC 4 cut(s) 107, 227, 236, 320
HpyF3I CTNAG 2 cut(s) 350, 366
HpySE526I ACGT 1 cut(s) 126
Hsp92II CATG 3 cut(s) 204, 220, 225
Kpn2I TCCGGA 1 cut(s) 296
Kzo9I GATC 2 cut(s) 36, 87
LmnI GCTCC 1 cut(s) 74
LpnPI CCDG 9 cut(s) 58, 91, 133, 197, 224, 304, 310, 331, 402
Lsp1109I GCAGC 3 cut(s) 40, 68, 294
MaeII ACGT 1 cut(s) 126
MaeIII GTNAC 2 cut(s) 122, 152
MalI GATC 2 cut(s) 38, 89
MboI GATC 2 cut(s) 36, 87
MboII GAAGA 3 cut(s) 108, 401, 478
MhlI GDGCHC 3 cut(s) 164, 246, 382
MlsI TGGCCA 1 cut(s) 215
MluNI TGGCCA 1 cut(s) 215
MlyI GAGTC 3 cut(s) 302, 344, 371
MnlI CCTC 5 cut(s) 203, 301, 345, 401, 473
Mox20I TGGCCA 1 cut(s) 215
MroI TCCGGA 1 cut(s) 296
MscI TGGCCA 1 cut(s) 215
MseI TTAA 2 cut(s) 83, 440
Msp20I TGGCCA 1 cut(s) 215
MspI CCGG 1 cut(s) 297
MspR9I CCNGG 2 cut(s) 212, 319
MvaI CCWGG 2 cut(s) 212, 319
MwoI GCNNNNNNNGC 4 cut(s) 107, 227, 236, 320
NcoI CCATGG 1 cut(s) 216
NdeII GATC 2 cut(s) 36, 87
NlaIII CATG 3 cut(s) 204, 220, 225
NlaIV GGNNCC 1 cut(s) 76
NspI RCATGY 2 cut(s) 204, 225
PaeI GCATGC 1 cut(s) 225
PkrI GCNGC 4 cut(s) 55, 58, 284, 313
PleI GAGTC 3 cut(s) 301, 343, 370
PpsI GAGTC 3 cut(s) 301, 343, 370
Psp6I CCWGG 2 cut(s) 210, 317
PspGI CCWGG 2 cut(s) 210, 317
PspN4I GGNNCC 1 cut(s) 76
PspPI GGNCC 1 cut(s) 410
PstI CTGCAG 1 cut(s) 58
PstNI CAGNNNCTG 1 cut(s) 349
RsaI GTAC 1 cut(s) 428
RsaNI GTAC 1 cut(s) 427
SaqAI TTAA 2 cut(s) 83, 440
SatI GCNGC 4 cut(s) 54, 57, 283, 312
Sau3AI GATC 2 cut(s) 36, 87
Sau96I GGNCC 1 cut(s) 410
SchI GAGTC 3 cut(s) 302, 344, 371
ScrFI CCNGG 2 cut(s) 212, 319
SduI GDGCHC 3 cut(s) 164, 246, 382
SetI ASST 6 cut(s) 55, 103, 129, 179, 356, 435
SfcI CTRYAG 2 cut(s) 54, 96
SphI GCATGC 1 cut(s) 225
SsiI CCGC 1 cut(s) 311
SspI AATATT 1 cut(s) 289
StyD4I CCNGG 2 cut(s) 210, 317
StyI CCWWGG 1 cut(s) 216
TaiI ACGT 1 cut(s) 129
TatI WGTACW 1 cut(s) 426
TauI GCSGC 1 cut(s) 314
Tru1I TTAA 2 cut(s) 83, 440
Tru9I TTAA 2 cut(s) 83, 440
TseI GCWGC 3 cut(s) 53, 56, 282
TspDTI ATGAA 1 cut(s) 284
XceI RCATGY 2 cut(s) 204, 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.