Rh5CG080600

Protein of unknown function, DUF599

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0013762
Physical Location & Seq
Reverse (-)
6184075 .. 6186582
2508 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG080600.1

Sequence Viewer

Length: 708 bp
ATGCTTGATCTTCTATTGGTTCCGAGTGCAATACTGATTTTAATTGTCTATATTGTATTCACAAGCGGCAGAGATGGCCACGATGGTCACGGCACCAAAGTGGAGTGGGTGAAAAGAATCATGACGGTTGATACCAGAGAAGGTCTTGCTGCGATCTCATCCAGGATAACAGAAACATATGCTATGTGTGGAGCCTGCTTAATGATCTTTCCTACAGCTTGGCTTGCAAACCCTTCCAGTTACGTGTTTCAGAGAAAACTTGTGTATGGTAACTCGAGCCCATCACTCGTTAGCATCAAGTTCGTAATCCTCATATCATGTTTCCTCCCGGCCTTGGGATTCTTTGCTTATTCAGCAAAGCAATTCAAGGAAACGCTCTATCTAATAGGCTCAAAAGACGAAAGAGCTGATGAGGCCAGGGCAATCAGGGCTTTTATAAGGGGAACTACTTTCTTCTCGCTTGGGATCAGATGTCTACTATGTGCTGGCCCTTCGCTACTATGGTTTTTTGGCCCTATCCCCATGTTTGTGTCCTCTGTTGCTTTAGTCATATCCCTCCATGTCGCTGGCAATCGTGCCAGTCCACAATTGCATGTTCTTCCTGAGAATACGGATGAAAGTCACGGGGACAATTCCAATATTGCAAAGGAAGAAGCATATGGTCACTCTAGTATTGATATAGAGATGCCCCCGCCTCCTGGTGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF599

Protein Analysis

235

Amino Acids

25.72

Weight (kDa)

6.58

Isoelectric Point (pI)

40.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF599 PF04654 6 - 187 6.6e-26 Protein of unknown function, DUF599
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 437
AccB1I GGYRCC 1 cut(s) 92
AccI GTMKAC 1 cut(s) 475
AciI CCGC 2 cut(s) 66, 692
AclWI GGATC 1 cut(s) 473
AcoI YGGCCR 1 cut(s) 76
AfiI CCNNNNNNNGG 3 cut(s) 334, 335, 698
AflIII ACRYGT 1 cut(s) 243
AgsI TTSAA 1 cut(s) 367
AjnI CCWGG 3 cut(s) 161, 416, 697
AleI CACNNNNGTG 1 cut(s) 98
AluBI AGCT 2 cut(s) 218, 407
AluI AGCT 2 cut(s) 218, 407
AlwI GGATC 1 cut(s) 473
Ama87I CYCGRG 1 cut(s) 274
AoxI GGCC 5 cut(s) 76, 330, 414, 487, 511
ApeKI GCWGC 1 cut(s) 149
AspS9I GGNCC 2 cut(s) 488, 512
AsuC2I CCSGG 1 cut(s) 329
AsuHPI GGTGA 1 cut(s) 121
AvaI CYCGRG 1 cut(s) 274
BalI TGGCCA 1 cut(s) 78
BanI GGYRCC 1 cut(s) 92
BanII GRGCYC 1 cut(s) 281
BbvI GCAGC 1 cut(s) 136
BccI CCATC 3 cut(s) 68, 77, 289
BceAI ACGGC 1 cut(s) 106
BcgI CGANNNNNNTGC 2 cut(s) 283, 317
BciT130I CCWGG 3 cut(s) 163, 418, 699
BcnI CCSGG 1 cut(s) 329
BfaI CTAG 1 cut(s) 669
BfmI CTRYAG 1 cut(s) 213
BisI GCNGC 2 cut(s) 67, 150
BlsI GCNGC 2 cut(s) 68, 151
Bme1390I CCNGG 4 cut(s) 163, 329, 418, 699
BmeT110I CYCGRG 1 cut(s) 274
BmgT120I GGNCC 2 cut(s) 488, 512
BmiI GGNNCC 3 cut(s) 21, 94, 193
BmrFI CCNGG 4 cut(s) 163, 329, 418, 699
BmsI GCATC 2 cut(s) 303, 675
BpuMI CCSGG 1 cut(s) 329
BsaAI YACGTR 1 cut(s) 244
BsaJI CCNNGG 2 cut(s) 333, 417
Bsc4I CCNNNNNNNGG 3 cut(s) 334, 335, 698
Bse1I ACTGG 2 cut(s) 237, 579
BseBI CCWGG 3 cut(s) 163, 418, 699
BseDI CCNNGG 2 cut(s) 333, 417
BseGI GGATG 2 cut(s) 158, 619
BseLI CCNNNNNNNGG 3 cut(s) 334, 335, 698
BseMII CTCAG 1 cut(s) 594
BseNI ACTGG 2 cut(s) 237, 579
BseXI GCAGC 1 cut(s) 136
BshFI GGCC 5 cut(s) 78, 332, 416, 489, 513
BshNI GGYRCC 1 cut(s) 92
BsiHKCI CYCGRG 1 cut(s) 274
BsiSI CCGG 1 cut(s) 329
BslFI GGGAC 1 cut(s) 641
BslI CCNNNNNNNGG 3 cut(s) 334, 335, 698
BsmFI GGGAC 1 cut(s) 641
BsnI GGCC 5 cut(s) 78, 332, 416, 489, 513
BsoBI CYCGRG 1 cut(s) 274
Bsp1286I GDGCHC 1 cut(s) 281
Bsp143I GATC 4 cut(s) 7, 153, 204, 465
BspACI CCGC 2 cut(s) 66, 692
BspANI GGCC 5 cut(s) 78, 332, 416, 489, 513
BspCNI CTCAG 1 cut(s) 595
BspHI TCATGA 1 cut(s) 120
BspLI GGNNCC 3 cut(s) 21, 94, 193
BspPI GGATC 1 cut(s) 473
BspT107I GGYRCC 1 cut(s) 92
BsrI ACTGG 2 cut(s) 237, 579
BssECI CCNNGG 2 cut(s) 333, 417
BssMI GATC 4 cut(s) 7, 153, 204, 465
BssT1I CCWWGG 1 cut(s) 333
Bst2UI CCWGG 3 cut(s) 163, 418, 699
Bst4CI ACNGT 1 cut(s) 127
BstBAI YACGTR 1 cut(s) 244
BstC8I GCNNGC 4 cut(s) 196, 225, 487, 568
BstDEI CTNAG 1 cut(s) 603
BstF5I GGATG 2 cut(s) 158, 619
BstKTI GATC 4 cut(s) 10, 156, 207, 468
BstMBI GATC 4 cut(s) 7, 153, 204, 465
BstMWI GCNNNNNNNGC 5 cut(s) 75, 224, 353, 413, 428
BstNI CCWGG 3 cut(s) 163, 418, 699
BstNSI RCATGY 1 cut(s) 596
BstSCI CCNGG 4 cut(s) 161, 327, 416, 697
BstSFI CTRYAG 1 cut(s) 213
BstV1I GCAGC 1 cut(s) 136
BstXI CCANNNNNNTGG 1 cut(s) 566
BsuRI GGCC 5 cut(s) 78, 332, 416, 489, 513
BtsCI GGATG 2 cut(s) 158, 619
Cac8I GCNNGC 4 cut(s) 196, 225, 487, 568
CciI TCATGA 1 cut(s) 120
Cfr13I GGNCC 2 cut(s) 488, 512
CviAII CATG 5 cut(s) 121, 318, 523, 560, 593
DdeI CTNAG 1 cut(s) 603
DpnI GATC 4 cut(s) 9, 155, 206, 467
DpnII GATC 4 cut(s) 7, 153, 204, 465
EaeI YGGCCR 1 cut(s) 76
Eco130I CCWWGG 1 cut(s) 333
Eco24I GRGCYC 1 cut(s) 281
Eco88I CYCGRG 1 cut(s) 274
EcoRII CCWGG 3 cut(s) 161, 416, 697
EcoT14I CCWWGG 1 cut(s) 333
EcoT38I GRGCYC 1 cut(s) 281
ErhI CCWWGG 1 cut(s) 333
FaeI CATG 5 cut(s) 124, 321, 526, 563, 596
FaqI GGGAC 1 cut(s) 641
FatI CATG 5 cut(s) 120, 317, 522, 559, 592
FauI CCCGC 1 cut(s) 699
FauNDI CATATG 2 cut(s) 178, 658
FblI GTMKAC 1 cut(s) 475
Fnu4HI GCNGC 2 cut(s) 67, 150
FokI GGATG 2 cut(s) 145, 626
FriOI GRGCYC 1 cut(s) 281
Fsp4HI GCNGC 2 cut(s) 67, 150
FspBI CTAG 1 cut(s) 669
GluI GCNGC 2 cut(s) 67, 150
HaeIII GGCC 5 cut(s) 78, 332, 416, 489, 513
HapII CCGG 1 cut(s) 329
Hin1II CATG 5 cut(s) 124, 321, 526, 563, 596
HinfI GANTC 2 cut(s) 117, 339
HpaII CCGG 1 cut(s) 329
HphI GGTGA 1 cut(s) 121
Hpy166II GTNNAC 2 cut(s) 476, 584
Hpy188I TCNGA 3 cut(s) 24, 252, 470
Hpy188III TCNNGA 2 cut(s) 121, 602
Hpy8I GTNNAC 2 cut(s) 476, 584
HpyAV CCTTC 3 cut(s) 134, 243, 501
HpyCH4III ACNGT 1 cut(s) 127
HpyCH4IV ACGT 1 cut(s) 243
HpyCH4V TGCA 4 cut(s) 29, 227, 592, 644
HpyF10VI GCNNNNNNNGC 5 cut(s) 75, 224, 353, 413, 428
HpyF3I CTNAG 1 cut(s) 603
HpySE526I ACGT 1 cut(s) 243
Hsp92II CATG 5 cut(s) 124, 321, 526, 563, 596
Kzo9I GATC 4 cut(s) 7, 153, 204, 465
LmnI GCTCC 1 cut(s) 191
Lsp1109I GCAGC 1 cut(s) 136
LweI GCATC 2 cut(s) 303, 675
MaeI CTAG 1 cut(s) 669
MaeII ACGT 1 cut(s) 243
MaeIII GTNAC 5 cut(s) 86, 239, 269, 620, 662
MalI GATC 4 cut(s) 9, 155, 206, 467
MboI GATC 4 cut(s) 7, 153, 204, 465
MboII GAAGA 3 cut(s) 445, 590, 662
MfeI CAATTG 1 cut(s) 587
MhlI GDGCHC 1 cut(s) 281
MlsI TGGCCA 1 cut(s) 78
MluCI AATT 4 cut(s) 42, 362, 587, 631
MluNI TGGCCA 1 cut(s) 78
MnlI CCTC 6 cut(s) 320, 335, 406, 544, 566, 705
Mox20I TGGCCA 1 cut(s) 78
MscI TGGCCA 1 cut(s) 78
MseI TTAA 2 cut(s) 41, 200
MslI CAYNNNNRTG 2 cut(s) 98, 527
Msp20I TGGCCA 1 cut(s) 78
MspI CCGG 1 cut(s) 329
MspR9I CCNGG 4 cut(s) 163, 329, 418, 699
MunI CAATTG 1 cut(s) 587
MvaI CCWGG 3 cut(s) 163, 418, 699
MwoI GCNNNNNNNGC 5 cut(s) 75, 224, 353, 413, 428
NciI CCSGG 1 cut(s) 329
NdeI CATATG 2 cut(s) 178, 658
NdeII GATC 4 cut(s) 7, 153, 204, 465
NlaIII CATG 5 cut(s) 124, 321, 526, 563, 596
NlaIV GGNNCC 3 cut(s) 21, 94, 193
NmuCI GTSAC 3 cut(s) 86, 620, 662
NspI RCATGY 1 cut(s) 596
OliI CACNNNNGTG 1 cut(s) 98
PaeR7I CTCGAG 1 cut(s) 274
PagI TCATGA 1 cut(s) 120
PfeI GAWTC 2 cut(s) 117, 339
PfoI TCCNGGA 1 cut(s) 161
PkrI GCNGC 2 cut(s) 68, 151
Ppu21I YACGTR 1 cut(s) 244
PsiI TTATAA 1 cut(s) 437
Psp6I CCWGG 3 cut(s) 161, 416, 697
PspGI CCWGG 3 cut(s) 161, 416, 697
PspN4I GGNNCC 3 cut(s) 21, 94, 193
PspPI GGNCC 2 cut(s) 488, 512
PspXI VCTCGAGB 1 cut(s) 274
RseI CAYNNNNRTG 2 cut(s) 98, 527
SaqAI TTAA 2 cut(s) 41, 200
SatI GCNGC 2 cut(s) 67, 150
Sau3AI GATC 4 cut(s) 7, 153, 204, 465
Sau96I GGNCC 2 cut(s) 488, 512
ScrFI CCNGG 4 cut(s) 163, 329, 418, 699
SduI GDGCHC 1 cut(s) 281
SetI ASST 4 cut(s) 145, 220, 246, 409
SfaNI GCATC 2 cut(s) 303, 675
SfcI CTRYAG 1 cut(s) 213
Sfr274I CTCGAG 1 cut(s) 274
SlaI CTCGAG 1 cut(s) 274
SmiMI CAYNNNNRTG 2 cut(s) 98, 527
SmlI CTYRAG 1 cut(s) 274
SmoI CTYRAG 1 cut(s) 274
Sse9I AATT 4 cut(s) 42, 362, 587, 631
SsiI CCGC 2 cut(s) 66, 692
SspI AATATT 1 cut(s) 640
SspMI CTAG 1 cut(s) 669
StyD4I CCNGG 4 cut(s) 161, 327, 416, 697
StyI CCWWGG 1 cut(s) 333
TaaI ACNGT 1 cut(s) 127
TaiI ACGT 1 cut(s) 246
TaqI TCGA 1 cut(s) 275
TasI AATT 4 cut(s) 42, 362, 587, 631
TauI GCSGC 1 cut(s) 69
TfiI GAWTC 2 cut(s) 117, 339
Tru1I TTAA 2 cut(s) 41, 200
Tru9I TTAA 2 cut(s) 41, 200
TseFI GTSAC 3 cut(s) 86, 620, 662
TseI GCWGC 1 cut(s) 149
Tsp45I GTSAC 3 cut(s) 86, 620, 662
TspDTI ATGAA 1 cut(s) 630
TspGWI ACGGA 1 cut(s) 626
XceI RCATGY 1 cut(s) 596
XhoI CTCGAG 1 cut(s) 274
XmiI GTMKAC 1 cut(s) 475
XspI CTAG 1 cut(s) 669
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.